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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://mundaymicroscope.com/bx40-olympus-microscope/
Durable, modular, upright compound microscope known for clinical, educational, and research use, offering brightfield and phase contrast, UIS optics, and ergonomic features for comfortable, long-term observation, making it popular for routine pathology (like Mohs surgery) and teaching labs. As an earlier BX model, it's reliable, configurable with different heads (binocular, trinocular) and accessories, and often updated with modern LED lighting, providing excellent cost-performance for detailed specimen viewing.
Proper citation: Olympus: BX40 Microscope (RRID:SCR_027824) Copy
https://sakura.eu/solutions/microtomy/accu-cut-srm-500
Compact, manual rotary microtome designed for preparation of thin sections of human and animal tissue samples of varying hardness, as far as they are suitable for manual cutting. Microtome for parafin sectioning. Can be used for all applications as diagnostic aid related to in vitro examination within the histopathological process.
Proper citation: Sakura: Accu-Cut SRM 500 Rotary Microtome (RRID:SCR_027823) Copy
Private research university in Lahore, Punjab, Pakistan. Founded in 1985, it is ranked as one of the most prestigious modern universities in Pakistan. In 1984, Syed Babar Ali recognized the shortage of qualified managers in the country.
Proper citation: Lahore University of Management Sciences; Lahore; Pakistan (RRID:SCR_027828) Copy
https://www.addgene.org/collections/brain-armamentarium/
Collection of molecular genetic reagents to gain access to many different brain cell types. Provides scientists with advanced genetic tools, primarily AAV (Adeno-Associated Virus) vectors with cell-type specific "enhancers," to precisely target, map, monitor, and manipulate specific cell types and circuits in the brain and spinal cord.
Proper citation: BRAIN Armamentarium AAV Collection (RRID:SCR_027885) Copy
https://vpixx.com/hardware/research-grade-lcds/
Specialized monitor engineered for scientific rigor, replacing consumer displays with research-grade control and synchronization for visual experiments. Features high-performance industrial LCD glass, and a panel controller which has been custom designed to support vision research. Includes an array of peripherals which often need to be synchronized to video during an experiment, including stereo audio stimulator, button box port for precise reaction-time measurement, triggers for electrophysiology equipment, and complete analog I/O subsystem.
Proper citation: VPixx: VIEWPixx system (RRID:SCR_027888) Copy
Portal that allows users to explore taxonomy-guided genome selections, visualize epigenetic assays, and analyze chromatin data across basal ganglia cell populations identified by the BRAIN Initiative Cell Atlas Network (BICAN) with an interactive research platform. The portal allows for investigation of several key epigenetic assays including associated with active enhancers and promoters, repressed genes, and constitutive heterochromatin. Used to analyze complex genomic and epigenomic data from the brain, helping identify specific cell types, understand gene regulation, and map disease-related molecular events, ultimately aiding in understanding neurological disorders like Alzheimer's, autism, and depression by revealing what goes wrong at the cellular level, leading to better gene therapies.
Proper citation: BICAN Basal Ganglia Epigenome Explorer (RRID:SCR_027887) Copy
https://github.com/blaserlab/blaseRtools/tree/v0.0.0.9202
Software R tools for Blaser Lab Data Analysis. Package includes commonly used functions for R analysis in the Blaser Lab.
Proper citation: blaseRtools (RRID:SCR_027871) Copy
Mid-volume, automated immunoassay system used in clinical labs to perform a wide range of tests for diagnosing and monitoring diseases, detecting infections, checking hormone levels, and assessing cardiac health, by analyzing biological samples like blood for specific proteins, hormones, and other markers with high reliability and efficiency, often integrated into the larger, flexible Atellica Solution for automated workflows.
Proper citation: Siemens: Atellica IM 1300 Analyzer (RRID:SCR_027876) Copy
Microplate reader designed for academic, clinical, and industrial laboratories to detect light-emitting or absorbing markers with Manufacturer/Brand: PerkinElmer (formerly Wallac Oy). It supports over 10 non-radioactive technologies, including fluorescence, luminescence, time-resolved fluorometry, and absorbance in various plate formats (1-864 wells). Accepts microtitration plates (up to 1536 wells), Petri dishes, slides, and filters.Equipped with shaking, scanning, and optional temperature control/liquid dispensers for kinetic studies. Operates as a stand-alone unit or integrates with robotic systems for high-throughput screening.
Proper citation: Wallac: Victor2 1420 Multilabel Counter (RRID:SCR_027955) Copy
Software R package for assessment of PCR artifacts in RNA-Seq data. Used for duplication rate quality control for RNA-Seq datasets.
Proper citation: dupRadar (RRID:SCR_027976) Copy
https://azurebiosystems.com/products/azure-imaging-systems/azure-600/
Benchtop instrument designed for life science research, specifically for imaging, detecting, and quantifying protein and nucleic acids on gels and blots. It enables multi-channel analysis, including laser infrared (IR) fluorescence, RGB visible fluorescence, and chemiluminescence, allowing for multiplexed Western blots.
Proper citation: Azure Biosystems: c600 Imaging System (RRID:SCR_027952) Copy
https://oncogenomics.bmc.lu.se/MutationExplorer/
Web application to explore somatic mutations in large breast cancer RNA-sequencing datasets, particularly from the Sweden Cancerome Analysis Network–Breast (SCAN-B) project, helping to link genetic alterations to clinical features, patient outcomes (like survival), and potential drug targets, adding a dimension to gene expression analysis for guiding treatment.
Proper citation: SCAN-B MutationExplorer (RRID:SCR_027895) Copy
https://coast.noaa.gov/digitalcoast/tools/btm.html
Software set of tools useful in the analysis of benthic terrain. Includes tools for geomorphology and classification.
Proper citation: Benthic Terrain Modeler (RRID:SCR_027926) Copy
https://www.leica-microsystems.com/products/light-microscopes/p/leica-dm6000-b/
Upright microscope designed for histology and pathology. With motorized z-focus, motorized and coded 7x nosepiece, fully automated transmitted light axis, and fully automated 5x or 8x fluorescence axis, the automated Leica DM6000 B research microscope provides all transmitted light contrast methods including the world’s first fully automated Differential Interference Contrast (DIC).
Proper citation: Leica: DM6000 B histology microscope (RRID:SCR_027977) Copy
https://cran.r-project.org/web/packages/compareGroups/
Software R package to create tables displaying results of univariate analyses, stratified or not by categorical variable groupings.
Proper citation: compareGroups (RRID:SCR_027994) Copy
https://www.integra-biosciences.com/switzerland/en/pipetting-robots/assist-plus
Pipetting Robot enables automated pipetting with mounted any of INTEGRA’s 25 multichannel electronic pipettes or D-ONE single channel pipetting modules onto the ASSIST PLUS pipette holder. Provides different pipetting programs.
Proper citation: Integra Biosciences: ASSIST PLUS Pipetting Robot (RRID:SCR_027988) Copy
https://spectraservices.com/mm5/graphics/00000001/MZFLIII.pdf
Fluorescence stereomicroscope offers 3D image, larger panoramic field of view, more intense fluorescence, and longer working distances. Living objects can be observed spatially in large fields of view.
Proper citation: Leica: MZ FLIII fluorescence stereomicroscope (RRID:SCR_027907) Copy
Chinese biotechnology company based in Beijing that designs and manufactures single cell sequencing technology used in scientific research. Company specializing in high-throughput single-cell multi-omics technology, providing tools, kits, and platforms for single-cell DNA methylation, RNA sequencing, and immune repertoire profiling. Founded in 2018, it offers the SeekOne™ Digital Droplet System.
Proper citation: SeekGene (RRID:SCR_028027) Copy
https://www.seekgene.com/Product/SeekMateTinitanFL.html
Fluorescence cell analyzer designed for cell counting and viability detection. It can analyze up to 6 samples per run and supports both bright-field and fluorescence counting modes.
Proper citation: SeekGene: SeekMate Tinitan Fluorescence Cell Counter (RRID:SCR_028028) Copy
https://github.com/AlexanRNA/nanowgs/releases/tag/v0.0.2
Nextflow pipeline to process whole genome long-read sequencing data generated in the context of ASAP project.
Proper citation: NanoWGS (RRID:SCR_028113) Copy
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