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https://www.trikinetics.com/Downloads/DAMSystem3%20Software%20Data%20Sheet.pdf
Software tool for data collection to upload output from set of activity monitors and periodically saves it in disk files on Macintosh or Windows PC. Part of TriKinetics Drosophila Activity Monitoring System.
Proper citation: TriKinetics DAMSystem3 Software (RRID:SCR_021809) Copy
http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039
Browser for mouse developmental anatomy. Ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of Edinburgh Mouse Atlas Project (EMAP) in order to provide structured controlled vocabulary of stage specific anatomical structures for developing laboratory mouse.
Proper citation: Mouse Developmental Anatomy Ontology Browser (RRID:SCR_021808) Copy
https://github.com/jeffdaily/parasail
Software tool as multiple sequence alignement for global, local and semi global alignments.
Proper citation: PARASAIL (RRID:SCR_021805) Copy
http://www.lbgi.fr/~julie/LEON-BIS
Software tool for sequence alignments evaluation. Multiple alignment evaluation of sequence neighbours using Bayesian inference system. Used to distinguish sections in multiple sequence alignments that are conserved across whole family or within subfamilies, and should be useful for automatic, high-throughput genome annotations, 2D/3D structure predictions, protein-protein interaction predictions etc.
Proper citation: LEON BIS (RRID:SCR_021803) Copy
Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community.
Proper citation: TrainingSpace (RRID:SCR_022036) Copy
https://www.cellscale.com/products/microtester/
System includes MicroTester G2 device and software. MicroTester G2 is mechanical test device that can be used to test properties of variety of tissues and materials. Main components of device are load application microbeam, actuators, imaging system, and fluid bath/test chamber. MicroTester G2 software is divided into two modules: data collection module and review and analysis module.
Proper citation: CellScale: MicroTester G2 system (RRID:SCR_022034) Copy
Public university located in center of Iran in World Heritage city of Yazd.
Proper citation: Shahid Sadoughi University of Medical Sciences; Yazd; Iran (RRID:SCR_022031) Copy
Software tool for learning fundamentals of RSLogix ladder logic programming.
Proper citation: LogiXPro (RRID:SCR_021978) Copy
Software allows estimating growth and production at stand level of main forest species implanted in Argentine Mesopotamia such as Pino taeda, Eucalyptus grandis, Pino elliottii and Araucaria angustifolia. Areas for which models were adjusted correspond to province of Misiones, northeast of Corrientes and Concordia in province of Entre Ríos.
Proper citation: PlaForNEA (RRID:SCR_022027) Copy
https://www.coolled.com/products/pe-300ultra/
Highly controllable fluorescence microscopy Illumination System which offers broad spectrum LED illumination for imaging most common fluorophores. System offers precise control over wavelength irradiance and shuttering. Used for LED microscope lighting.
Proper citation: CoolLED: pE-300ultra (RRID:SCR_021972) Copy
https://simulabeta.sourceforge.io/
Software tool as simulation program for insulin glucose feedback control. Based on nonlinear MiMe-NoCoDI model.
Proper citation: SimulaBeta (RRID:SCR_021900) Copy
MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals.
Proper citation: MDAR (RRID:SCR_022038) Copy
https://github.com/QZH2022/germline_flow
High performance of GPU accelerated variant calling tool in genome data analysis.
Proper citation: germline flow (RRID:SCR_021906) Copy
https://github.com/vlink/marge
Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation.
Proper citation: Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) Copy
http://bioinfo.jialab-ucr.org/CancerMIRNome/
Web server for cancer miRNome interactive analysis and visualization based on human miRNome data of cancer types from The Cancer Genome Atlas, and public cancer circulating miRNome profiling datasets from NCBI Gene Expression Omnibus and ArrayExpress. Comprehensive database for interactive analysis and visualization of miRNA expression profiles.
Proper citation: CancerMIRNome (RRID:SCR_022092) Copy
Software tool for searching metabolites in different databases including Kegg, HMDB, LipidMaps, Metlin, NP Atlas, KNApSAcK, MINE and in house library. Designed for searches through experimental masses obtained from mass spectrometry techniques. Metabolite annotation tool that uses expert system to score putative annotation based on analytical information acquired under different configurations.
Proper citation: CEU Mass Mediator (RRID:SCR_022090) Copy
https://github.com/mourisl/Rcorrector
Software tool as kmer based error correction method for RNAseq data. Can also be applied to other types of sequencing data where read coverage is nonuniform, such as single cell sequencing. Used for error correction for Illumina RNAseq reads.
Proper citation: Rcorrector (RRID:SCR_022011) Copy
https://www.microbialtec.com/aerobic-cultivation.html
Aerobic cultivation services to culture various microorganisms that can be isolated from readily available sources.
Proper citation: Creative Biogene Aerobic Cultivation Service Resource (RRID:SCR_022099) Copy
https://www.bcgsc.ca/resources/software/ntcard
Software tool for estimating k-mer coverage histogram of genomics data. Streaming algorithm for estimating frequencies of k-mers in genomics datasets.
Proper citation: ntCard (RRID:SCR_022010) Copy
https://www.microbialtec.com/strain-anaerobic-culture.html
Service for anaerobic bacteria cultivation and culture using variety of culture media and culture conditions. Includes collection, strain cultivation, isolation, identification and strain preservation.
Proper citation: Creative Biogene Strain Anaerobic Culture Service Resource (RRID:SCR_022097) Copy
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