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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Biocode Commons Resource Report Resource Website |
Biocode Commons (RRID:SCR_024553) | data or information resource, portal, topical portal | Platform provides resources for genomic observations from collection to analysis and publication. Works with standards community to ensure clear vocabularies and useful ontologies for biological resources and related assets. Biocode Commons is also collaborating on development of Biological Collections Ontology, working to better integrate ontologies, vocabularies, and relevant standards that are related to BCO. | Biological Collections Ontology, Biological Collections Ontology development, genomic observations, collection, analysis, publication, standards community, |
is listed by: DataCite is listed by: University of California; California; USA has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.7286 | SCR_024553 | SciCrunch Registry | 2026-10-24 12:49:42 | 0 | |||||||||
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Olympus FV10-ASW Viewer Resource Report Resource Website 10+ mentions |
Olympus FV10-ASW Viewer (RRID:SCR_024433) | data processing software, image processing software, software application, software resource | Software for image processing. Reads data captured by FV1200/FV1000/FV500/FV300 microscopes. Images saved with FV file format (OIF, OIB, FV Multi-Tiff) can be read. | FV1200/FV1000/FV500/FV300 microscopes image processing, FV1200/FV1000/FV500/FV300 microscopes data processing, FV file format, | Free, Available for download, Freely available | https://www.olympus-lifescience.com/ | SCR_024433 | SciCrunch Registry | FV10-ASW Viewer software v4.2b | 2026-10-24 12:49:41 | 39 | |||||||||
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XDD Resource Report Resource Website |
XDD (RRID:SCR_024434) | software resource | Software digital library and cyberinfrastructure facilitating discovery and utilization of data and knowledge in published documents. | digital library and cyberinfrastructure, discovery and utilization of data and knowledge, data and knowledge in published documents, | has parent organization: University of Wisconsin-Madison; Wisconsin; USA | Free, Frely available | SCR_024434 | SciCrunch Registry | 2026-10-24 12:49:41 | 0 | ||||||||||
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Molecular Property Diagnostic Suite Covid-19 Resource Report Resource Website 1+ mentions |
Molecular Property Diagnostic Suite Covid-19 (RRID:SCR_024545) | MPDS-Covid19 | data or information resource, disease-related portal, portal, topical portal | Galaxy based disease specific web portal for drug discovery research of COVID-19. Open access disease specific drug discovery portal. | Drug discovery, disease specific drug discovery, COVID-19 | Covid-19 | Department of Biotechnology Govt. of India | DOI:10.1101/2023.08.29.555437 | Free, Freely available | SCR_024545 | SciCrunch Registry | Galaxy MPDS COVID-19 | 2026-10-24 12:49:42 | 1 | ||||||
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BatchEval Resource Report Resource Website 1+ mentions |
BatchEval (RRID:SCR_024546) | data analysis software, data processing software, software application, software resource | Software tool for evaluating batch effects in data integration. Tool to improve accuracy and reliability of experimental results. Used to evaluate batch effect of dataset integration and output comprehensive report. | evaluating batch effects in data integration, evaluating batch effects, data integration, improve accuracy and reliability, experimental results, | Free, Available for download, Freely available | SCR_024546 | SciCrunch Registry | 2026-10-24 12:49:42 | 1 | |||||||||||
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Kassandra Resource Report Resource Website 1+ mentions |
Kassandra (RRID:SCR_024548) | data analysis software, data processing software, software application, software resource | Software bulk RNA-seq cellular deconvolution tool. Used for analysis of healthy tissue and tumor biopsies. Based on RNA-seq NGS data of biological sample, Kassandra predicts cellular composition including stromal and immune elements by analyzing gene expression. | RNA-seq cellular deconvolution, analysis of healthy tissue and tumor biopsies, RNA-seq NGS data, predict cellular composition, analyzing gene expression, | BostonGene | PMID:35944503 | Free, Available for download, Freely available | https://github.com/BostonGene/Kassandra | SCR_024548 | SciCrunch Registry | 2026-10-24 12:49:44 | 5 | ||||||||
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LFP Monitoring Resource Report Resource Website |
LFP Monitoring (RRID:SCR_024428) | instrument resource, software resource, source code | Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings. | OpenBehavior, acquisition system, long term video neurophysiology recordings, seizure detection, behavioral scoring, multianimal chronic Local Field Potential, video monitoring, LFP video recording, Graphical User Interface for seizure detection and behavioral scoring, Intan adapter board, Open Ephys acquisition system, Bonsai, custom made electrodes and cables, instrument, device, | is listed by: OpenBehavior | PMID:36192155 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lfpmonitoring/ | SCR_024428 | SciCrunch Registry | Local Field Potential video Monitoring | 2026-10-24 12:49:41 | 0 | |||||||
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Tecan: Infinite M200 Resource Report Resource Website 1+ mentions |
Tecan: Infinite M200 (RRID:SCR_024560) | instrument resource | TECAN Infinite M200 is laboratory device and accessory for multiplex luminescence and fluorescence applications. Device features automated robotic arm for dispensing samples or reagents onto cuvettes or microplates, as well as range of high speed and throughput sample injection capabilities. Infinite M200 is integrated with TECAN's proven laser-based multi-channel detection technology, to measure multiple biological responses simultaneously. System features graphical user interface to configure instrument for single or multiple sample injection processes. Accommodates range of different cuvette and microplate vessels, suitable for both 1.5ml and 0.2ml tubes as well as plates up to 384 wells. Multichannel optical detector can detect up to four different signals in parallel, with wide range of detection wavelengths. Designed for high-throughput applications with sensitive fluorescence and luminescence. Features automated sample injection unit that enables hands-free operation of 96 or 1,536 up to eight-channel multipoint experiments, providing maximum flexibility. Comes with range of software, including intuitive data collection and analysis interface. Designed with automated calibration settings, providing reliable, accurate and reproducible results. | Tecan, laboratory device, multiplex luminescence and fluorescence applications, automated dispenser, sample injection, cuvettes, microplates, tubes, automated sample injection, signals detection, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024560.pdf | Model_Number_Infinite_M200 | SCR_024560 | SciCrunch Registry | TECAN Infinite M200, Infinite M200 | 2026-10-24 12:49:42 | 4 | ||||||||
|
Tecan: NanoQuantPlate Resource Report Resource Website 1+ mentions |
Tecan: NanoQuantPlate (RRID:SCR_024561) | instrument resource | Device designed for simultaneous measurement of multiple low volume samples. Consists of 16 precision manufactured quartz optics in user friendly format, offering precise, straightforward absorbance and fluorescence based measurements from sample volumes as low as 2 µl. Combined with Tecan’s Infinite series readers – the Infinite 200 PRO, Infinite F500 and Infinite M1000 PRO – the NanoQuant Plate provides solution for DNA or RNA quantification, allowing detection of concentrations down to 1 ng/µl for wide variety of applications. | Device, simultaneous measurement of multiple low volume samples, low volume samples, absorbance and fluorescence based measurements, DNA or RNA quantification, low concentration measurement, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024561.pdf | Model_Number_NanoQuantPlate | SCR_024561 | SciCrunch Registry | 2026-10-24 12:49:42 | 4 | |||||||||
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Leica: TCS SP8 DLS LightSheet microscope Resource Report Resource Website 1+ mentions |
Leica: TCS SP8 DLS LightSheet microscope (RRID:SCR_024563) | instrument resource | Digital LightSheet full confocal with gentle single plane illumination microscope for easy light sheet imaging. TwinFlect mirror deflects illuminating light sheet at 90° angle, which allows integration of illumination and detection beam path into vertical axis of every inverted, Leica TCS SP8 confocal. | Leica, Digital LightSheet, full confocal microscope, light sheet imaging, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024563.pdf | SCR_024563 | SciCrunch Registry | Leica DLS TCS SP8 | 2026-10-24 12:49:44 | 9 | |||||||||
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DrugSim2DR Resource Report Resource Website 1+ mentions |
DrugSim2DR (RRID:SCR_024564) | simulation software, software application, software resource | Software R package to predict drug functional similarity to drug repurposing. | predict drug functional similarity, similarity to drug repurposing, | is listed by: CRAN | Free, Available for download, Freely available | SCR_024564 | SciCrunch Registry | 2026-10-24 12:49:43 | 1 | ||||||||||
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Cancer Information Service Resource Report Resource Website 1+ mentions |
Cancer Information Service (RRID:SCR_024445) | data or information resource, disease-related portal, portal, topical portal | Portal provides information on Cancer Statistics in Japan. Official website operated by National Cancer Center for cancer information. | Cancer statistics in Japan, National Cancer Center, cancer information, | cancer | Free, Freely available | SCR_024445 | SciCrunch Registry | Cancer Information Service in Japan | 2026-10-24 12:49:41 | 1 | |||||||||
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Comprehensive Everglades Restoration Plan Resource Report Resource Website 1+ mentions |
Comprehensive Everglades Restoration Plan (RRID:SCR_024557) | CERP | data or information resource, portal, topical portal | Platform provides framework for restoring, protecting and preserving the greater Everglades ecosystem. The plan is partnership between State of Florida and federal government. | Everglades ecosystem, ecosystem restoring plan, ecosystem protecting plan, ecosystem preserving plan, |
is listed by: DataCite has parent organization: University of California; California; USA |
South Florida Water Management District ; State of Florida |
https://api.datacite.org/dois?prefix=10.25497 | SCR_024557 | SciCrunch Registry | South Florida Water Management District Comprehensive Everglades Restoration Plan | 2026-10-24 12:49:42 | 6 | |||||||
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Roche: Cobas C311 Resource Report Resource Website 1+ mentions |
Roche: Cobas C311 (RRID:SCR_024559) | instrument resource | Autoanalyzer is standalone system that provides consolidated testing from range of clinical chemistry applications. Allows determination of sodium, potassium and chloride in serum, plasma and urine using ion selective electrodes. Measurement of HbA1c levels in whole blood can also be performed. | Roche, autoanalyzer, chemistry applications testing, chemicals detection, HbA1c levels detection, sodium, potassium, chloride, serum, plasma, urine, whole blood, ion selective electrodes, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_024559.pdf | Model_Number_Cobas_C311 | SCR_024559 | SciCrunch Registry | 2026-10-24 12:49:42 | 1 | |||||||||
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VSEARCH Resource Report Resource Website 1000+ mentions |
VSEARCH (RRID:SCR_024494) | data analysis software, data processing software, software application, software resource | Software versatile open source tool for metagenomics. Used for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. | processing and preparing metagenomics, genomics and population genomics, nucleotide sequence data, | is listed by: SoftCite | PMID:27781170 | Free, Available for download, Freely available | SCR_024494 | SciCrunch Registry | 2026-10-24 12:49:41 | 1553 | |||||||||
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TomoStudio Resource Report Resource Website 1+ mentions |
TomoStudio (RRID:SCR_024498) | data analysis software, data processing software, software application, software resource | Software tool for acquisition and analysis, visualization and analysis of RI tomograms. Used to color code the image according to the refractive index and identify various types of quantitative data. | Tomocube, Inc., Daejeon, . Republic of Korea, visualization and analysis of RI tomograms, color code the image, | is listed by: SoftCite | Restricted | SCR_024498 | SciCrunch Registry | 2026-10-24 12:49:42 | 4 | ||||||||||
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Splice AI Resource Report Resource Website 10+ mentions |
Splice AI (RRID:SCR_024532) | data analysis software, data processing software, software application, software resource | Software package annotates genetic variants with their predicted effect on splicing. Used to identify splice variants. | annotate genetic variants, predicted effect on splicing, identify splice variants, | Free, Available for download, Freely available | https://github.com/Illumina/SpliceAI | SCR_024532 | SciCrunch Registry | 2026-10-24 12:49:42 | 44 | ||||||||||
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Ocular Resource Report Resource Website 1+ mentions |
Ocular (RRID:SCR_024490) | data acquisition software, data processing software, software application, software resource | Scientific image acquisition software. Software allows color and monochrome cameras to capture high quality images and videos from their microscope or lens system. | Teledyne Photometrics, image acquisition, capture high quality images and video, | is listed by: SoftCite | Restricted | SCR_024490 | SciCrunch Registry | Teledyne Photometrics Ocular | 2026-10-24 12:49:41 | 4 | |||||||||
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Umediation Resource Report Resource Website 1+ mentions |
Umediation (RRID:SCR_024492) | data analysis software, data processing software, software application, software resource | Software R package that examines the role of unmeasured confounding in mediation analysis allowing for normally distributed or Bernoulli distributed exposures, outcomes, mediators, measured confounders, and unmeasured confounders. Umediation also accommodates multiple measured confounders, multiple unmeasured confounders, and allows for mediator exposure interaction on the outcome. Enables to simulate unmeasured confounding in mediation analysis in order to see how the results of the mediation analysis would change in the presence of unmeasured confounding. | simulate unmeasured confounding in mediation analysis, mediation analysis, unmeasured confounding, | is listed by: SoftCite | PMID:28724417 | Free, Available for download, Freely available | SCR_024492 | SciCrunch Registry | 2026-10-24 12:49:42 | 1 | |||||||||
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IntFOLD Resource Report Resource Website 1+ mentions |
IntFOLD (RRID:SCR_024523) | data access protocol, software resource, web service | Web integrated protein structure and function prediction server. Integrated server for modelling protein structures and functions from amino acid sequences. | protein structure prediction, protein function prediction, modelling protein structures and functions from amino acid sequences, | is listed by: SoftCite | PMID:25820431 | Free, Freely available | SCR_024523 | SciCrunch Registry | 2026-10-24 12:49:43 | 8 |
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