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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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TractionsForAll Resource Report Resource Website 1+ mentions |
TractionsForAll (RRID:SCR_021819) | data analysis software, data processing software, software application, software resource | Software tool to calculate 2D tractions exerted by adherent cell on its substrate. Used in field of mechanobiology to study contractile responses of variety of cell types. | Traction force analysis, 2D tractions, adherent cell, mechanobiology, cell contractile responses | uses: MATLAB | Free, Freely available | SCR_021819 | 2026-09-19 12:54:58 | 2 | ||||||||||
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Trikinetics DAM FileScan Resource Report Resource Website 1+ mentions |
Trikinetics DAM FileScan (RRID:SCR_021817) | software resource | Software tool used in Drosophila Activity Monitor system to scann data for errors. Also allows user to extract data from monitor files and bin data in different lengths. | scann data for errors, Drosophila Activity Monitor system, extract data | is related to: TriKinetics: Drosophila Activity Monitoring System | SCR_021817 | DAM FileScan | 2026-09-19 12:54:58 | 1 | ||||||||||
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NHP pycortex Resource Report Resource Website 1+ mentions |
NHP pycortex (RRID:SCR_021815) | data processing software, data visualization software, software application, software resource | Software tool as adaptation for NHP brains and pipelines. Pycortex python based toolkit for surface visualization of fMRI data. | fMRI data, surface visualization | has parent organization: Royal Netherlands Academy of Arts and Sciences; Amsterdam; Netherlands | Free, Available for download, Freely available | SCR_021815 | NHP-pycortex | 2026-09-19 12:54:58 | 1 | |||||||||
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eQTL Catalogue Resource Report Resource Website 50+ mentions |
eQTL Catalogue (RRID:SCR_021700) | catalog, data or information resource, database | Catalog provides uniformly processed gene expression and splicing QTLs from all available public studies on human. Expression and splicing QTLs recomputed from public datasets. | Gene expression, splicing QTLs, public datasets, human data, public studies | is related to: Open Targets Genetics Portal | DOI:10.1101/2020.01.29.924266 | Free, Freely available | SCR_021700 | 2026-09-19 12:54:57 | 59 | |||||||||
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SqueezeMeta Resource Report Resource Website 10+ mentions |
SqueezeMeta (RRID:SCR_021821) | data analysis software, data processing software, software application, software resource | Software tool as fully automated pipeline for metagenomic analysis. Used for metagenomics covering all steps of analysis. Features several characteristics including co-assembly procedure or co-assembly of unlimited number of metagenomes via merging of individual assembled metagenomes, both with read mapping for estimation of abundances of genes in each metagenome. Includes binning and bin checking for retrieving individual genomes. | automated metagenomics pipeline, metagenomics analysis steps, metagenomic analysis | Spanish Ministry of Economy and Competitiveness. | DOI:10.3389/fmicb.2018.03349 | Free, Available for download, Freely available | SCR_021821 | 2026-09-19 12:54:58 | 20 | |||||||||
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Bayesian Analysis of Single Cell Sequencing Resource Report Resource Website 1+ mentions |
Bayesian Analysis of Single Cell Sequencing (RRID:SCR_021829) | data analysis software, data processing software, software application, software resource | Software tool for Bayesian analysis of single cell sequencing data. Used to perform statistical analyses of single cell RNA sequencing datasets in context of supervised experiments. | Bayesian analysis, single cell sequencing data, single cell RNA sequencing datasets, statistical analyses, supervised experiments | PMID:26107944 | Free, Available for download, Freely available | https://github.com/catavallejos/BASiCS | SCR_021829 | BASiCS, Bayesian Analysis of Single-Cell Sequencing data | 2026-09-19 12:54:58 | 2 | ||||||||
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Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands Resource Report Resource Website 1+ mentions |
Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands (RRID:SCR_021706) | institution | Institute is entirely devoted to psycholinguistics – the study of how we produce and understand language, and how we acquire these skills as first or second language learners. The only institution in the world entirely dedicated to psycholinguistics, and is also one of only three among total of 90 within the Max Planck Society to be located outside Germany. |
has parent organization: Max-Planck-Gesellschaft is parent organization of: ELAN |
SCR_021706 | 2026-09-19 12:54:57 | 1 | ||||||||||||
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Circa Resource Report Resource Website 10+ mentions |
Circa (RRID:SCR_021828) | data analytics software, data processing software, data visualization software, software application, software resource | Software tool used to plot circular plots and visualize genomic data along genomic locations. | OMGenomics, | Restricted | SCR_021828 | visualize genomic data, OMGenomics Circa, circular plots | 2026-09-19 12:54:58 | 19 | ||||||||||
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ELAN Resource Report Resource Website 10+ mentions |
ELAN (RRID:SCR_021705) | software resource | Software annotation tool for audio and video recordings. Annotation can be sentence, word or gloss, comment, translation or description of any feature observed in media. Annotations can be created on multiple layers. Tiers can be hierarchically interconnected. Annotation can either be time-aligned to media or it can refer to other existing annotations. Content of annotations consists of Unicode text and annotation documents are stored in XML format (EAF). | Annotation tool, audio recordings, video recordings, Unicode text, annotation documents, documents stored, XML format | has parent organization: Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands | Free, Available for download, Freely available | SCR_021705 | 2026-09-19 12:54:57 | 28 | ||||||||||
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PsychENCODE Resource Report Resource Website 1+ mentions |
PsychENCODE (RRID:SCR_021760) | consortium, data or information resource, organization portal, portal | Collaboration between research institutes working to provide framework of regulatory genomic elements in individuals with neuropsychiatric disorders.Collaboration has resulted in comprehensive set of manuscripts published in Science providing new insights into biology of developing, adult, and diseased human brain.Manuscripts are organized around three flagship articles, first analyzing human development, second studying disease transcriptomes, and third integrating tissue and single cell data with deep learning approaches. | regulatory genomic elements, neuropsychiatric disorders, diseased human brain, manuscripts published in Science | Free, Freely available | SCR_021760 | 2026-09-19 12:54:57 | 9 | |||||||||||
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Biomed Resource Watch Resource Report Resource Website |
Biomed Resource Watch (RRID:SCR_021761) | data or information resource, data repository, service resource, storage service resource | Knowledgebase of biomedical research resources. Repository for storing validation and problematic information about variety of entities within biomedical domain, such as antibodies, cell lines, etc. Enables researchers to submit their own claims about specific entity to make validation/problematic information F.A.I.R. (Findable, Accessable, Interoperable, Reuseable). | FAIR data, biomedical data, data validation, problematic information, problematic cell line, problematic antibody | Free, Available for download, Freely available | SCR_021761 | 2026-09-19 12:54:57 | 0 | |||||||||||
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Rescognito Resource Report Resource Website |
Rescognito (RRID:SCR_021874) | data access protocol, data or information resource, portal, software resource, topical portal, web service | Platform for recognizing and promoting Open Research. Open online service that aims to offer fairer and more democratic platform for recognizing researcher contributions.Allows researchers to openly acknowledge colleagues for meaningful contributions to research process, such as Publication, Mentoring,Teaching,Data sharing,Reproducibility practices, Sharing negative results, Participation in discussion groups,Software development, Clinical trials management, Leadership, Community outreach, Public engagement. ORCID iDs, DOIs, grant IDs and other persistent identifiers are used where available as links to appropriate contributions. | Open Research, Rescognito Inc., platform for recognizing researcher contributions | Free, Freely available | SCR_021874 | 2026-09-19 12:54:59 | 0 | |||||||||||
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Seq-N-Slide Resource Report Resource Website 10+ mentions |
Seq-N-Slide (RRID:SCR_021752) | software resource | Set of automated workflows for common sequencing based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening. Sequencing data analysis pipelines. | Sequencing data analysis pipelines | Free, Available for download, Freely available | SCR_021752 | 2026-09-19 12:54:57 | 20 | |||||||||||
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Halvade Somatic Resource Report Resource Website 1+ mentions |
Halvade Somatic (RRID:SCR_021771) | software resource | Software implements germline and somatic variant calling pipelines based on best practices pipelines from Broad Institute using Spark framework. Produces VCF output file which contains single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by used tools. Program requires Spark on either local cluster with one or more nodes, Amazon EMR cluster or Docker image to run. | somatic variant, GATK, Halvade, VCF output file, germline, somatic variant calling, Spark framework | uses: GATK | Free, Available for download, Freely available | SCR_021771 | Halvade for Spark | 2026-09-19 12:54:58 | 1 | |||||||||
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Online Kappa Calculator Resource Report Resource Website 10+ mentions |
Online Kappa Calculator (RRID:SCR_021770) | software resource | Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters. | Calculator, calculate kappa, chance adjusted measure of agreement, number of cases, number of categories, number of | Free, Freely available | SCR_021770 | 2026-09-19 12:54:58 | 13 | |||||||||||
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Zeiss LabScope Resource Report Resource Website 1+ mentions |
Zeiss LabScope (RRID:SCR_021768) | data acquisition software, data processing software, image acquisition software, software application, software resource | Software tool for image acquisition using WiFi-enabled Zeiss microscopes. Compatible with Windows PCs and with Apple tablets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Image acquisition, acquisition using WiFi enabled Zeiss microscopes, Zeiss | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_021768 | Zeiss LabScope software | 2026-09-19 12:54:57 | 4 | ||||||||||
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Atherosclerosis Risk in Communities Resource Report Resource Website 10+ mentions |
Atherosclerosis Risk in Communities (RRID:SCR_021769) | ARIC | data or information resource, disease-related portal, portal, topical portal | Platform for prospective epidemiologic study conducted in four U.S. communities. One of most significant and longest running heart health studies and is the largest study of heart health in African Americans. ARIC investigates risk factors for heart disease and stroke, and connections between cardiovascular and cognitive health. ARIC includes two parts: Cohort Component and Community Surveillance Component. Cohort Component began in 1987, and each ARIC field center randomly selected and recruited cohort sample of individuals aged 45-64 from defined population in their community, to receive extensive examinations, including medical, social, and demographic data. In Community Surveillance Component, four communities are investigated to determine long term trends in hospitalized myocardial infarction and coronary heart disease deaths in men and women aged 35-84 years. | Heart health studies, epidemiologic study, heart disease risk factors, stroke risk factors, cardiovascular and cognitive health connection, atherosclerosis risk | coronary heart disease, stroke, myocardial infarction, atherosclerosis | NHLBI | PMID:2646917 PMID:34112321 |
Free, Freely available | SCR_021769 | The Atherosclerosis Risk in Communities (ARIC) Study | 2026-09-19 12:54:58 | 43 | ||||||
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Papers with Code Resource Report Resource Website 10+ mentions |
Papers with Code (RRID:SCR_021800) | data or information resource, portal, topical portal | Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics. | article, machine learning datasets, code, methods, evaluation tables | Free, Freely available | SCR_021800 | 2026-09-19 12:54:58 | 20 | |||||||||||
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IonWizard Resource Report Resource Website 1+ mentions |
IonWizard (RRID:SCR_021764) | data acquisition software, data processing software, software application, software resource | Software tool to perform rapid fluorescence and morphometric real time, synchronous data acquisition with IonOptix systems, as well as polynomial fitting and analysis for myocyte research. Features include data trace averaging and filtering,composite images, and transient analysis. Integrates presentation of fluorescence traces and images, analog voltages, and cell length data under intuitive interface. Analyzes raw data by performing ratio, ion, or linear calibration calculations. | IONOPTIX LLC, polynomial fitting, analysis for myocyte research, data trace averaging and filtering, fluorescence, morphometry | Restricted | SCR_021764 | IonOptix IonWizard | 2026-09-19 12:54:57 | 8 | ||||||||||
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FigsharePlus Resource Report Resource Website 1+ mentions |
FigsharePlus (RRID:SCR_021762) | data or information resource, data repository, service resource, storage service resource | Web based interface designed for academic research data management and research data dissemination. Accepts all file types. Enables academics to upload, share, cite and discover all manner of research outputs with security of knowing our hosting options and platform support long term preservation of data.Used to share big datasets from 100GB up. Added features and expert guidance are also included for sharing your data FAIR-ly.During data deposit, personal email support is available and once submitted, Figshare data expert will conduct review of the metadata and spot check of your dataset files and offer guidance, with main aim of enhancing discoverability and reusability. | FAIR data |
is related to: FigShare is related to: NIH Figshare Archive |
https://plus.figshare.com/, https://github.com/figshare/user_documentation | SCR_021762 | 2026-09-19 12:54:57 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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