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https://www.tomocube.com/product/tomostudio/

Software tool for acquisition and analysis, visualization and analysis of RI tomograms. Used to color code the image according to the refractive index and identify various types of quantitative data.

Proper citation: TomoStudio (RRID:SCR_024498) Copy   

•   Source: SciCrunch Registry
  

https://pypi.org/project/spliceai/

Software package annotates genetic variants with their predicted effect on splicing. Used to identify splice variants.

Proper citation: Splice AI (RRID:SCR_024532) Copy   

•   Source: SciCrunch Registry
  

https://www.photometrics.com/products/ocular

Scientific image acquisition software. Software allows color and monochrome cameras to capture high quality images and videos from their microscope or lens system.

Proper citation: Ocular (RRID:SCR_024490) Copy   

•   Source: SciCrunch Registry
  

https://github.com/SharonLutz/Umediation

Software R package that examines the role of unmeasured confounding in mediation analysis allowing for normally distributed or Bernoulli distributed exposures, outcomes, mediators, measured confounders, and unmeasured confounders. Umediation also accommodates multiple measured confounders, multiple unmeasured confounders, and allows for mediator exposure interaction on the outcome. Enables to simulate unmeasured confounding in mediation analysis in order to see how the results of the mediation analysis would change in the presence of unmeasured confounding.

Proper citation: Umediation (RRID:SCR_024492) Copy   

•   Source: SciCrunch Registry
  

https://www.reading.ac.uk/bioinf/IntFOLD/

Web integrated protein structure and function prediction server. Integrated server for modelling protein structures and functions from amino acid sequences.

Proper citation: IntFOLD (RRID:SCR_024523) Copy   

•   Source: SciCrunch Registry
  

https://playbook-workflow-builder.cloud/playbooks

Web based platform that facilitates knowledge resolution by enabling users to traverse growing network of input datasets, semantically annotated API endpoints, and data visualization tools contributed by the ecosystem. Via user friendly web based user interface, workflows can be constructed from these building blocks without technical expertise.

Proper citation: Playbook Workflow Builder (RRID:SCR_024540) Copy   

•   Source: SciCrunch Registry
  

https://remnrem.net/

Web Luna based interactive viewer for EDF signal and annotations, specifically designed for polysomnographic data. Supports visualization, analyses and manipulation of sleep signals, range of summary statistics and hypnogram based analyses including automated staging.

Proper citation: Moonlight (RRID:SCR_024542) Copy   

•   Source: SciCrunch Registry
  

https://www.leicabiosystems.com/de-de/histologiegeraete/gewebeinfiltration/leica-tp1020/

Leica TP1020 tissue processor is available in four configurations: basic instrument, basic instrument with vacuum, basic instrument with fume control system and basic instrument with both vacuum and fume control. Used for gentle specimen processing and high level of specimen safety at all stages of processing run.

Proper citation: Leica: TP1020 Automatic Benchtop Tissue Processor Semi Enclosed (RRID:SCR_024535) Copy   

•   Source: SciCrunch Registry
  

https://www.science-metrix.com/

Independent research evaluation firm, based in the U.S. and Canada. Provider of research analytics services and data. Provides science research evaluation and analytics to assess science and technology activities. Headquartered in Montréal, Canada, Science-Metrix is known for independent bibliometric analysis and research evaluation and bibliometric and informetrics expertise. Science-Metrix was an early adopter of Elsevier’s abstract database Scopus and has worked closely with Elsevier. Elsevier has acquired Science-Metrix Inc. in 2018.

Proper citation: Science-Metrix (RRID:SCR_024471) Copy   

•   Source: SciCrunch Registry
  

https://www.diagnostics.us.tosohbioscience.com/analyzers/aia-900

AIA immunoassay analyzer offers automation for immunoassay testing with flexible expansion capabilities. AIA-900 features: 90 tests/hour throughput; Load 10 racks on board; Load up to 5 tests/patient; First result in 18 minutes; Random access; Continuous processing; Simple touch screen operation; Bar coded primary tube sampling; Clot detection; Unit Dose Test Cup; Automated pretreatment; Automated dilution from 2 to 1000.

Proper citation: Tosoh: AIA-900 Automated Immunoassay Analyzer (RRID:SCR_024473) Copy   

•   Source: SciCrunch Registry
  

https://harperlab.connect.hms.harvard.edu/CARGO_Cellular_Autophagy_Regulation_GOlgiphagy/

Web browser for analysis of proteomic data. ShinyApp interface generated in R and RStudio.

Proper citation: CARGO (RRID:SCR_024474) Copy   

•   Source: SciCrunch Registry
  

https://www.planetmicrobe.org/

Web based platform that enables data discovery from curated historical and on going oceanographic sequencing efforts. Enables discovery and integration of oceanographic ‘omics, environmental and physiochemical data layers. Used to centralize and standardize contextual data associated with major marine 'omic datasets. Used for marine microbiology to discover and analyze interconnected 'omics and environmental data.

Proper citation: Planet Microbe (RRID:SCR_024478) Copy   

•   Source: SciCrunch Registry
  

https://www.evosep.com/

Business Services and Biotechnology Research company in Odense, Denmark.

Proper citation: Evosep (RRID:SCR_024590) Copy   

•   Source: SciCrunch Registry
  

https://pattern.health

Platform for researchers to economically create and manage digital health programs. Platform built for research management and digital interventions. Helps researchers collect data and engage participants.

Proper citation: Pattern Health Digital Research Platform (RRID:SCR_024468) Copy   

•   Source: SciCrunch Registry
  

https://www.waters.com/nextgen/us/en.html

Publicly traded analytical laboratory instrument and software company headquartered in Milford, Massachusetts. Leading provider of lab equipment, supplies and software. Has pioneered chromatography, mass spectrometry, and thermal analysis innovations.

Proper citation: Waters (RRID:SCR_024589) Copy   

•   Source: SciCrunch Registry
  

https://webprotege.stanford.edu

Web based platform for editing biomedical ontologies. Web application for editing OWL 2 ontologies. Open source, lightweight, web based ontology editor implemented in Java and JavaScript using OWL API and Google Web Toolkit. For users who do not wish to host their ontologies on Stanford servers, WebProtégé is available as Web app that can be run locally using Servlet container such as Tomcat.

Proper citation: WebProtege (RRID:SCR_024627) Copy   

•   Source: SciCrunch Registry
  

https://www.malvernpanalytical.com/en/products/product-range/omnisec/accessories/omnisec-software

Software for OMNISEC instrument control, data acquisition, analysis and reporting. Used for advanced analysis of proteins and polymers by GPC/SEC, and is specifically designed for control of OMNISEC RESOLVE and OMNISEC REVEAL.

Proper citation: OMNISEC (RRID:SCR_024485) Copy   

•   Source: SciCrunch Registry
  

https://www.sdsc.edu/services/hpc/tscc/index.html

Provides advanced computing resources and services to support needs of UC San Diego research community. In addition, researchers from other academic institutions and industries can also participate in this research computing program. TSCC operates on two different computing models – Condo (a system purchase model) and Hotel (a pay-as-you-go model) to support broad range of research computing workloads including traditional HPC, HTC, and emerging big data pipelines.

Proper citation: Triton Shared Computing Cluster (RRID:SCR_024640) Copy   

•   Source: SciCrunch Registry
  

http://pbil.univ-lyon1.fr/software/phyldog/

Software tool to simultaneously build gene and species trees when gene families have undergone duplications and losses. Can analyze thousands of gene families in dozens of genomes simultaneously.

Proper citation: PHYLDOG (RRID:SCR_024487) Copy   

•   Source: SciCrunch Registry
  

https://github.com/chaoszhang/A-pro

Software tool for species tree reconstruction from multi-copy gene family trees.Used for estimating unrooted species tree given set of unrooted gene trees and is statistically consistent under the multi-species coalescent model. ASTRAL-pro extends ASTRAL to allow multi-copy genes. ASTRAL-Pro 2, ultrafast and memory efficient version of ASTRAL-Pro that adopts placement based optimization algorithm for significantly better scalability without sacrificing accuracy.

Proper citation: ASTRAL-Pro (RRID:SCR_024520) Copy   

•   Source: SciCrunch Registry