Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
NanoFreeLunch Resource Report Resource Website 1+ mentions |
NanoFreeLunch (RRID:SCR_027196) | software toolkit, software resource | Software toolkit for quantitative detection of DNA methylation from nanopore sequencing data without raw signals. | quantitative detection of DNA methylation, nanopore sequencing data, data without raw signals, | Free, Available for download, Freely available | SCR_027196 | 2026-08-15 11:32:47 | 1 | |||||||||||
|
Thermo Fisher: Orbitrap Ascend MultiOmics Tribrid Mass Spectrometer Resource Report Resource Website |
Thermo Fisher: Orbitrap Ascend MultiOmics Tribrid Mass Spectrometer (RRID:SCR_027321) | instrument resource | High-resolution mass spectrometer designed for comprehensive multiomics research. It combines a high-performance Orbitrap mass analyzer with a tribrid architecture (quadrupole, linear ion trap, and Orbitrap) for enhanced ion separation, fragmentation, and detection capabilities. This instrument is particularly well-suited for analyzing proteins, lipids, and metabolites in a single experiment, enabling researchers to gain deeper insights into biological systems | mass spectrometer, enhanced ion separation, fragmentation, detection, analyzing, proteins, lipids, metabolites | DOI:10.1021/acs.analchem.3c01155 | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027321 | SCR_027321 | 2026-08-15 11:32:49 | 0 | ||||||||||
|
IsoformSwitchAnalyzeR Resource Report Resource Website 10+ mentions |
IsoformSwitchAnalyzeR (RRID:SCR_027320) | software toolkit, software resource | Software R package to identify, annotate and visualize isoform switches with functional consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc. | Identify, Annotate, Visualize, Isoform Switches with Functional Consequences, short- and long-read RNA-seq data, | Lundbeck Foundation ; Independent Research Fund Denmark |
PMID:30989184 | Free, Available for download, Freely available | SCR_027320 | 2026-08-15 11:33:01 | 12 | |||||||||
|
Turtle-Tech: BioDigital-QING Digital PCR System Resource Report Resource Website |
Turtle-Tech: BioDigital-QING Digital PCR System (RRID:SCR_027326) | instrument resource | BioDigital Qing is a digital PCR system with automated droplet preparation and reagent formulation, enabling all essential steps of digital PCR—including compartmentalization, thermal cycling, and data acquisition—to be completed on a single instrument. Utilizing nucleic acid quantification technology, it allows for absolute quantification without the need for a standard curve. A large volume of reaction mixture is partitioned or digitized into thousands of small, independent reactions, such that each microchamber contains either one or zero target copies. The original concentration is then calculated using statistical methods based on the number of positive and negative microchambers. | PCR system, automated droplet preparation and reagent formulation, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027326 | SCR_027326 | 2026-08-15 11:32:49 | 0 | |||||||||||
|
Bruker: BioSpec 70/30 USR MRI system Resource Report Resource Website 1+ mentions |
Bruker: BioSpec 70/30 USR MRI system (RRID:SCR_027282) | instrument resource | High-field, preclinical imaging system primarily used for research on small animals like mice and rats. It enables researchers to conduct detailed anatomical and functional studies, including morphological imaging, functional MRI (fMRI), diffusion tensor imaging (DTI), and MR spectroscopy (MRS). The system's high field strength allows for high-resolution imaging, enabling researchers to visualize intricate anatomical details and subtle changes in tissue and organ function. | High-field strength, preclinical imaging system, MRI, imaging, small animals, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027282.pdf | Model_Number_BioSpec_70/30_USR | SCR_027282 | , Bruker BioSpec 70/30 USR, 7 Tesla Bruker BioSpec 70/30 USR MRI system | 2026-08-15 11:32:48 | 1 | |||||||||
|
ESI: imageBIO266 system Resource Report Resource Website |
ESI: imageBIO266 system (RRID:SCR_027283) | instrument resource | Specialized laser ablation system designed for high-resolution, high-speed bioimaging using LA-ICP-MS (Laser Ablation Inductively Coupled Plasma Mass Spectrometry). Built to analyze elemental composition of biological samples, particularly tissues and cells, with focus on speed and precision. | Laser Ablation Inductively Coupled Plasma Mass Spectrometry, laser ablation system, bioimaging, analyze elemental composition of biological samples, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027283.pdf | Model_Number_imageBIO266 | SCR_027283 | Elemental Scientific Lasers imageBIO266, imageBIO266 | 2026-08-15 11:32:58 | 0 | |||||||||
|
rfxplot Resource Report Resource Website 1+ mentions |
rfxplot (RRID:SCR_027375) | software toolkit, software resource | Software toolbox for SPM5 which offers plotting effect sizes, fitted responses, and BOLD time courses averaged across subjects from within 2nd level (random effects) analyses. The toolbox offers a large variety of plot configuration both suitable for data exploration and producing high quality figures for publications. | plot configuration, data exploration, figures for publications, plots | PMID:19140033 | Free, Available for download, Freely available | SCR_027375 | 2026-08-15 11:33:02 | 3 | ||||||||||
|
Thermo Fisher: Orbitrap Exploris 120 high-resolution mass spectrometer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Orbitrap Exploris 120 high-resolution mass spectrometer (RRID:SCR_027370) | instrument resource | Orbitrap Exploris 120 LC-MS spectrometry instruments | SCR_027370 | 2026-08-15 11:32:50 | 1 | |||||||||||||
|
iDEP: Integrated Differential Expression and Pathway analysis Resource Report Resource Website 10+ mentions |
iDEP: Integrated Differential Expression and Pathway analysis (RRID:SCR_027373) | iDEP | web application, software resource | Integrated web application for differential expression and pathway analysis of RNA-Seq data. | differential expression, pathway analysis, RNA-Seq data, | NIGMS GM083226; NSF ; State of South Dakota |
PMID:30567491 | Free, Freely available | SCR_027373 | 2026-08-15 11:32:59 | 19 | ||||||||
|
Leica: DMI4000 B Automated Inverted Microscope Resource Report Resource Website |
Leica: DMI4000 B Automated Inverted Microscope (RRID:SCR_027345) | instrument resource | Microscope for scanning cell and tissue cultures. System features fluorescence axis for ultra brilliant fluorescence imaging.Internal filter wheel with motorized excitation manager and FIM (Fluorescence Intensity Manager) enables excitation of fluorochromes in less than 20 milliseconds. | microscope, scanning cell and tissue cultures, ultra brilliant fluorescence imaging, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027345 | Model_Number_DMI4000_B | SCR_027345 | DMI4000 B Automated Inverted Microscope | 2026-08-15 11:33:02 | 0 | |||||||||
|
Olympus: BX41 Clinical Microscope Resource Report Resource Website 1+ mentions |
Olympus: BX41 Clinical Microscope (RRID:SCR_027355) | instrument resource | Olympus BX41 is clinical and research grade microscope. Can be customized. Offered as pre-configured with your choice of viewing head - binocular, ergo binocular, or trinocular. This has Plan N 4x, 10x, 40x, 100x oil objectives but others can be provided if needed. Comes with XY mechanical stage with slide holder and focusable condenser. | Microscope, Olympus, used microscope, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027355.pdf | Model_Number_Olympus_BX41 | SCR_027355 | Olympus BX41 | 2026-08-15 11:32:50 | 3 | ||||||||
|
Dynamont Resource Report Resource Website 1+ mentions |
Dynamont (RRID:SCR_027357) | source code, software resource | Software segmentation/resquiggling tool for ONT signals. Dynamic programming approach to segment ONT signals. | segmentation, resquiggling, ONT signals, | Free, Available for download, Freely available | , SCR_027365 | SCR_027357 | 2026-08-15 11:33:02 | 1 | ||||||||||
|
TOYOBO Resource Report Resource Website 1+ mentions |
TOYOBO (RRID:SCR_027440) | commercial organization | Japanese company that began as a textile manufacturer in 1882 and has expanded to become a global provider of high-function products, including films, functional polymers, industrial materials, and biotechnology products such as enzymes and diagnostic reagents. The company's business is organized around its core technologies in polymerization, modification, processing, and biotechnology, allowing it to contribute to fields like healthcare, environment, and electronics. | Japan, polymerization, modification, processing, biotechnology, healthcare, environment, electronics | Crossref Funder ID 100019953, ISNI 0000 0001 2217 1263, GRID grid.471279.e, Wikidata Q7830642 | https://ror.org/020a33943 | SCR_027440 | 2026-08-15 11:33:01 | 6 | ||||||||||
|
SeSAMe Resource Report Resource Website 10+ mentions |
SeSAMe (RRID:SCR_027388) | SeSAMe | software toolkit, software resource | Software R package for reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions. | reducing artifactual detection, DNA methylation, Infinium BeadChips, genomic deletions, | NCI U24 CA143882; NCI R01 CA170550; NCI U24 CA210969; Ovarian Cancer Research Fund Grant ; Michelle Lunn Hope Foundation ; Van Andel Research Institute |
PMID:30085201 | Free, Available for download, Freely available, | SCR_027388 | SEnsible Step-wise Analysis of DNA MEthylation | 2026-08-15 11:32:51 | 23 | |||||||
|
Antibody Watch Resource Report Resource Website |
Antibody Watch (RRID:SCR_027424) | knowledge base | Text mining antibody specificity from literature. Helps researchers identify potential problems with antibody specificity. By mining the scientific literature and linking findings to Research Resource Identifiers (RRIDs), it provides alerts on antibodies that may yield unreliable results, supporting reproducibility in biomedical research. | Text mining antibody specificity, identify potential problems with antibody specificity, identify potential problems, antibody specificity, antibody, scientific literature, | Ministry of Science and Technology ; Taiwan ; NIDDK U24DK097771; NIDA U24DA039832 |
PMID:34043624 | Free, Freely available | SCR_027424 | 2026-08-15 11:32:52 | 0 | |||||||||
|
Revvity: IVIS Spectrum 2 In Vivo Imaging System Resource Report Resource Website 1+ mentions |
Revvity: IVIS Spectrum 2 In Vivo Imaging System (RRID:SCR_027425) | instrument resource | In vivo optical imaging system used in preclinical research to non-invasively monitor and quantify biological processes in living animals over time. Designed with innovative camera with patented coating that delivers high sensitivity 2D and 3D bioluminescence and fluorescence imaging capabilities. | Imaging instrument, in vivo imaging studies, 2D and 3D bioluminescence and fluorescence imaging, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027425.pdf | Model_Number_IVIS_Spectrum_2 | SCR_027425 | IVIS Spectrum 2 In Vivo Imaging System | 2026-08-15 11:33:03 | 3 | |||||||||
|
BRAINCELL-AID Resource Report Resource Website |
BRAINCELL-AID (RRID:SCR_027398) | web application, software resource | Web service providing annotations for brain cell type–specific marker gene sets derived from single-cell RNA-seq data spanning the entire mouse brain. It uses a multi-agent AI framework that combines fine-tuned large language models with retrieval-augmented generation, producing biologically grounded annotations supported by peer-reviewed literature. | annotations for brain cell type–specific marker gene sets, single-cell RNA-seq data, mouse brain, | is organization facet of: BRAIN Initiative Cell Atlas Network | Free, Freely available, | SCR_027398 | Brain Cell type Annotation and Integration using Distributed AI | 2026-08-15 11:33:00 | 0 | |||||||||
|
Janelia Automatic Animal Behavior Annotator Resource Report Resource Website 1+ mentions |
Janelia Automatic Animal Behavior Annotator (RRID:SCR_027430) | JAABA | web application, software resource | Web application to create variety of automatic behavior classifiers. These classifiers input the animals' trajectories computed by tracking system, and they output time series indicating whether each animal is performing a given behavior in each video frame. Interactive machine learning for automatic annotation of animal behavior. Used to automatically compute interpretable, quantitative statistics describing video of behaving animals. | Automatic behavior classifiers creation, automatic behavior classifiers, automatically compute interpretation, quantitative statistics, describing video of behaving animals, . | PMID:23202433 | Free, Freely available, | SCR_027430 | Janelia Automatic Animal Behavior Annotator (JAABA) | 2026-08-15 11:33:03 | 4 | ||||||||
|
ChemDiv Resource Report Resource Website 10+ mentions |
ChemDiv (RRID:SCR_027402) | commercial organization | Target-to-Clinic Contract Research Organization (CRO) headquartered in San Diego, CA USA. ChemDiv executes pre-clinical discovery chemistry and biology for drug development and clinical trials for international portfolio of companies across the entire range of targets with small molecule and biotech drugs. The company operates multiple research and development (R&D) subsidiaries in Russia, Ukraine and China as well as business operations around the world. | drug development, small molecule, biotech drugs, | SCR_027402 | 2026-08-15 11:33:00 | 21 | ||||||||||||
|
JEOL: JCM-6000 Benchtop Scanning Electron Microscope Resource Report Resource Website |
JEOL: JCM-6000 Benchtop Scanning Electron Microscope (RRID:SCR_027403) | instrument resource | Compact Benchtop Scanning Electron Microscope. Intuitive operation is achieved via touch panel and new operation screens. The high or low vacuum mode is included in the standard configuration, and EDS can be installed, offering truly multi-functional benchtop SEM. | Jeol, benchtop, scanning electron microscope, microscope | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027403.pdf | Model_Number_Jeol_JCM-6000 | SCR_027403 | Jeol JCM-6000 | 2026-08-15 11:32:51 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
