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https://github.com/NCBI-Hackathons/PhenVar
Software tool used to generate a list of PubMed IDs to query and generate associations between publications. It utilizes a local SQLite cache in a configurable location to keep a local copy of relevant SRIDs, PMIDs, and the Abstract sections for the PMIDs.
Proper citation: PhenVar (RRID:SCR_015515) Copy
Software for browsing the image data acquired by Nikon C1 and a Nikon C1si system.
Proper citation: EZ-C1 FreeViewer (RRID:SCR_014277) Copy
A multi-purpose project automation tool written in Python which helps create technical documents. Dexy is a free-form literate documentation tool for writing any kind of technical document incorporating code. It provides a consistent interface to tools and scripts and keeps track of what to run, in which order, and with what parameters.
Proper citation: Dexy (RRID:SCR_013982) Copy
A software repository which provides open source software and technology for visualization, computer vision, medical imaging, data publishing, and quality software process solutions. Kitware also provides services such as creating customized applications for clients, porting their open-source tools to specialized computing platforms, and supporting their open-source software tools with documentation, professional consulting services, and software training.
Proper citation: Kitware (RRID:SCR_013989) Copy
http://www.canvasgfx.com/en/products/canvas-15
Illustration and communication software for engineers and technical graphics professionals that combines the ability to make 3D images while also applying filters and duatone images. The software has minimum precision levels and object illustration and image editing tools to keep data accurate throughout the authoring process. Users can accelerate and streamline the technical illustration workflow from initial import and design to final presentation, facilitate collaboration, and improve the overall productivity. Tutorials and technical documents are available on the website.
Proper citation: Canvas X (RRID:SCR_014288) Copy
https://europepmc.org/annotations
Text mining tool from Europe PMC that allows biological terms or concepts to be highlighted for readers on full text articles. These terms and concepts are identified by text mining algorithms, which are developed by a variety of text mining groups. However, it is up to the reader to control which selection of highlighted concepts they see. Once concepts of interest have been identified within the text, they are formatted according to the W3C Web Annotation Data Model and stored in a triple store via the EMBL-EBI RDF Platform. As a reader views an article in a web browser, any annotations in the triple store associated with the article are made available in a menu alongside the article.
Proper citation: SciLite (RRID:SCR_015015) Copy
https://www.omicron-laser.de/english/lasers/diode-lasers/phoxx-lasers/phoxx-diode-laser.html
Software application for PhoxX® Diode Laser to support Omicron products. It is related to uManager open source microscopy software for control of microscopes.
Proper citation: PhoxX Controller (RRID:SCR_016309) Copy
https://www.axionbiosystems.com/products/axis-software
Software for multi electrode array recording for Axion Biosystems. Used in enhancing cardiac and neural analysis through data processing and signal monitoring.
Proper citation: AxIS (RRID:SCR_016308) Copy
https://github.com/ABCD-STUDY/FINDTHECAT
Software that conducts a jspsych test for response time evaluation. Used in the ABCD Study.
Proper citation: FINDTHECAT (RRID:SCR_016036) Copy
Software tool as image and photo editor for PCs that run Windows. Features user interface with support for layers, unlimited undo, special effects, and variety of useful and powerful tools.
Proper citation: paint.net (RRID:SCR_017641) Copy
https://github.com/ebtrexler/NetSuite
Software for dynamic clamping. It uses National Instruments Boards.
Proper citation: NetClamp (RRID:SCR_016275) Copy
https://github.com/ABCD-STUDY/stroop-task
Software that conducts the Stroop Color Task. Used in the ABCD Study.
Proper citation: stroop-task (RRID:SCR_016033) Copy
https://michaelbach.de/fract/index.html
Software tool for visual test battery in form of a free computer program.Can be run within your browser or download as a stand-alone program. Used by many vision labs, optometrists and ophthalmologists.
Proper citation: Freiburg Vision Test ('FrACT') (RRID:SCR_016439) Copy
https://github.com/AllenInstitute/MIES
Software for Electrophysiology functions. It was developed by the Allen Institute.
Proper citation: MIES (RRID:SCR_016443) Copy
https://github.com/lufuhao/ReadCleaner4Scaffolding
This pipeline and the included scripts are used to filter useful reads for SSPACE.
Proper citation: ReadCleaner4Scaffolding (RRID:SCR_016166) Copy
Software tool as open source programming language to build simple, reliable, and efficient software. Developed by team at Google and many contributors from open source community.
Proper citation: golang (RRID:SCR_017096) Copy
Music composition and manipulation software.
Proper citation: MuseScore (RRID:SCR_016161) Copy
http://sourceforge.net/projects/ipig/
Standalone software tool for the integration of peptide identifications from mass spectrometry experiments into existing genome browser visualizations.
Proper citation: iPiG (RRID:SCR_016164) Copy
https://github.com/ekg/fastahack
Software application for indexing and extracting sequences and subsequences from FASTA files. It will only generate indexes for FASTA files in which the sequences have self-consistent line lengths.
Proper citation: Fastahack (RRID:SCR_016090) Copy
Software tool for neuronal recording in intact brain.
Proper citation: Autopatcher (RRID:SCR_017464) Copy
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