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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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IMGENEX Resource Report Resource Website |
IMGENEX (RRID:SCR_001986) | biomaterial supply portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2025. Commercial antibody supplier. Imgenex has merged with Novus Biologicals. | imgenex, novus biologicals, antibody | SCR_001986 | 2026-08-15 11:33:07 | 0 | ||||||||||||
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Institute of Ecology; Xalapa; Mexico Resource Report Resource Website |
Institute of Ecology; Xalapa; Mexico (RRID:SCR_027677) | INECOL | institution | INECOL focuses on research on natural resources, conservation, and biodiversity, aiming to solve ecological problems and generate scientific knowledge. | natural resources, conservation, biodiversity, solve ecological problems, generate scientific knowledge, | is parent organization of: Institute of Ecology INECOL Advanced Microscopy Unit Core Facility | ISNI 0000 0004 1798 0367, Crossref Funder ID 501100011109, GRID grid.452507.1 | https://ror.org/03yvabt26 | SCR_027677 | Instituto de Ecología | 2026-08-15 11:32:58 | 0 | |||||||
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bulkAnalyseR Resource Report Resource Website |
bulkAnalyseR (RRID:SCR_027647) | software toolkit, software resource | Software R package for most bulk sequencing datasets. Creates shiny app for interactive data analysis and visualisation. Used for analysing and sharing bulk sequencing results. | bulk sequencing results, analysing and sharing results, sequencing data, | uses: Shiny | Wellcome Trust | PMID:36583521 | Free, Available for download, Freely available | https://cran.r-project.org/web/packages/bulkAnalyseR/ | SCR_027647 | 2026-08-15 11:33:08 | 0 | |||||||
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scStudio Resource Report Resource Website |
scStudio (RRID:SCR_027618) | web application, software resource | Web-based application for comprehensive and modular scRNA-seq data analysis. to easily retrieve datasets from repositories housing most publicly available single-cell data. Future expansions of scStudio will integrate additional databases, such as the Human Cell Atlas. | Single-cell RNA sequencing, scRNA-seq data analysis, retrieve datasets from repositories, single-cell data, | European Union Horizon | DOI:10.1101/2025.04.17.649161 | Free, Freely available | https://compbio.imm.medicina.ulisboa.pt/app/scStudio, | SCR_027618 | 2026-08-15 11:33:04 | 0 | ||||||||
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Olympus: BX43 clinical microscope Resource Report Resource Website |
Olympus: BX43 clinical microscope (RRID:SCR_027598) | instrument resource | Olympus BX43 is a popular clinical and research grade microscope that can be configured for many different applications. Modular components enable you to customize the microscope for brightfield, polarization, phase contrast, and fluorescence. BX43 microscope utilizes a high color rendering white LED with a luminosity equivalent to a 30 W halogen lamp. The longlasting LED provides users a consistent color temperature at any brightness level.With an optional low magnification condenser, users can change the objective magnification from 2X to 100X (dry) without changing the condenser or moving the top lens. | BX43 microscope, clinical and research grade microscope, microscope | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027598.pdf | Model_Number_Olympus_BX43 | SCR_027598 | 2026-08-15 11:33:07 | 0 | ||||||||||
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PRECISE-TBI Preclinical CDEs Resource Report Resource Website |
PRECISE-TBI Preclinical CDEs (RRID:SCR_027597) | data or information resource, portal | Traumatic brain injury (TBI) Common Data Elements (CDEs) created by the PRE Clinical Interagency reSearch resourcE-TBI (PRECISE-TBI) group to harmonize (or merge) language and variables across the preclinical TBI neuroscience landscape. | Traumatic brain injury, Common Data Elements, preclinical TBI neuroscience landscape, harmonize language and variables, | is organization facet of: PRE Clinical Interagency Research Resource TBI | Free, Freely available | SCR_027597 | 2026-08-15 11:33:04 | 0 | ||||||||||
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novoSpaRc Resource Report Resource Website 1+ mentions |
novoSpaRc (RRID:SCR_027635) | software toolkit, software resource | Software package for flexible spatial reconstruction of single-cell gene expression with optimal transport. Framework for de novo spatial reconstruction of single-cell gene expression. Assigns cells to tissue locations using probabilistic/optimal-transport models, with or without prior marker information, and returns spatial maps and assignment probabilities. | Assign cells to tissue locations, flexible spatial reconstruction, single-cell gene expression, optimal transport, | PMID:34349282 | Free, Available for download, Freely available | https://github.com/rajewsky-lab/novosparc, https://pypi.org/project/novosparc/ | SCR_027635 | 2026-08-15 11:33:07 | 1 | |||||||||
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Siemens: Healthineers Atellica UAS 800 Analyzer Resource Report Resource Website |
Siemens: Healthineers Atellica UAS 800 Analyzer (RRID:SCR_027593) | instrument resource | Atellica UAS 800 Analyzer is automated urine sediment analyzer designed to minimize the need for manual microscopy. | automated urine sediment analyzer, urine sediment analyzer, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027593.pdf | Model_Number_Atellica_UAS_800 | SCR_027593 | Atellica UAS 800 Analyzer | 2026-08-15 11:33:04 | 0 | |||||||||
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Jewish General Hospital Lady Davis Institute for Medical Research; Montreal; Canada Resource Report Resource Website |
Jewish General Hospital Lady Davis Institute for Medical Research; Montreal; Canada (RRID:SCR_027625) | institution | Medical hospital-based research institute in Montreal, Quebec, Canada. |
is parent organization of: Lady Davis Institute Cell Imaging Core Facility is parent organization of: Lady Davis Institute Flow Cytometry Core Facility |
GRID grid.414980.0; ISNI 0000 0000 9401 2774; Crossref Funder ID 501100004734; Wikidata Q3145341; | https://ror.org/056jjra10 | SCR_027625 | 2026-08-15 11:33:07 | 0 | ||||||||||
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Revvity Inc. Resource Report Resource Website |
Revvity Inc. (RRID:SCR_027779) | commercial organization | American company in the life sciences and diagnostics business that is focused on selling to the pharmaceutical and biotechnology industries, especially in relation to approaches making use of new cell therapy or gene therapy developments. | life sciences, diagnostics, new cell therapy, gene therapy, | SCR_027779 | 2026-08-15 11:33:08 | 0 | ||||||||||||
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Bio-Rad: PTC Tempo Deepwell Thermal Cycler Resource Report Resource Website |
Bio-Rad: PTC Tempo Deepwell Thermal Cycler (RRID:SCR_027704) | instrument resource | Conventional PCR instrument built with fixed 96-deepwell reaction block that accommodates reaction volumes of 10 ul to up to 125 µl. | PCR, thermal cycler, 96-deepwell reaction block, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027704.pdf | Model_Number_PTC_Tempo_Deepwell | SCR_027704 | PTC Tempo Deepwell Thermal Cycler | 2026-08-15 11:33:06 | 0 | |||||||||
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Bio-Techne: Simple Plex Ella Automated Immunoassay System Resource Report Resource Website |
Bio-Techne: Simple Plex Ella Automated Immunoassay System (RRID:SCR_027757) | instrument resource | Benchtop automated Ella platform utilizes microfluidic Simple Plex assay cartridge designed to perform all reagent additions, wash steps, and incubations under precisely controlled conditions to run ELISA assays. Available for plexing up to 8 analytes. | microfluidic Simple Plex assay, ELISA assays, plexing up to 8 analytes, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027757.pdf | Model_Number_Simple_Plex_Ella | SCR_027757 | 2026-08-15 11:33:00 | 0 | ||||||||||
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XYomics Resource Report Resource Website |
XYomics (RRID:SCR_027774) | software toolkit, software resource | Software R package for analysis of condition-specific sex differences in omics data. Includes functions for differential expression, interaction testing, and gene regulatory network analysis. Used for analysis of sex differences in omics data for complex diseases. | analysis of condition-specific sex differences, omics data, differential expression, interaction testing, gene regulatory network analysis, | Free, Available for download, Freely available | SCR_027774 | 2026-08-15 11:33:10 | 0 | |||||||||||
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AER: Applied Econometrics with R Resource Report Resource Website 1+ mentions |
AER: Applied Econometrics with R (RRID:SCR_027778) | software toolkit, software resource | Software R package contains functions, data sets, examples, demos, and vignettes for the book Christian Kleiber and Achim Zeileis (2008), Applied Econometrics with R, Springer-Verlag, New York. ISBN 978-0-387-77316-2. | functions, data sets, examples, demos, vignettes, book Christian Kleiber and Achim Zeileis, | Free, Available for download, Freely available | SCR_027778 | 2026-08-15 11:33:00 | 1 | |||||||||||
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ActivePathways Resource Report Resource Website 1+ mentions |
ActivePathways (RRID:SCR_027736) | software toolkit, software resource | Software R package for analysing multiple omics datasets in the context of molecular pathways, biological processes and other types of gene sets.Method that first prioritises genes through multi-omics data fusion and then identifies enriched pathways with gene-level evidence from input datasets. | Pathway, genes, analysing multiple omics datasets, molecular pathways, biological processes, gene sets, | DOI:10.1038/s41467-024-49986-4 | Free, Available for download, Freely available | SCR_027736 | 2026-08-15 11:32:59 | 1 | ||||||||||
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BSgenome Hsapiens UCSC hg38 Resource Report Resource Website 1+ mentions |
BSgenome Hsapiens UCSC hg38 (RRID:SCR_027738) | software toolkit, software resource | Software R package containing the full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). | reference genome, full genomic sequences for Homo sapiens, | DOI:10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38 | Free, Available for download, Freely available | SCR_027738 | 2026-08-15 11:33:09 | 3 | ||||||||||
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Bruker: ELEXSYS-E580 pulse X-/Q-band system Resource Report Resource Website 1+ mentions |
Bruker: ELEXSYS-E580 pulse X-/Q-band system (RRID:SCR_027754) | instrument resource | Bruker ELEXSYS-E580 pulse X-/Q-band instrument offers state-of-the-art capabilities for both standard and cutting-edge EPR spectroscopy across a broad range of sample types and experimental needs. High-performance Electron Paramagnetic Resonance (EPR) spectrometer used for advanced research in chemistry, materials science, biochemistry, and physics, enabling studies of paramagnetic molecules, protein structures, quantum states, and materials by combining X-band (9-10 GHz) and Q-band (34 GHz) frequencies for high-resolution, sensitive pulse techniques. | Electron Paramagnetic Resonance, spectrometer, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027754.pdf | Model_Number_ELEXSYS_E_580 | SCR_027754 | Bruker ELEXSYS-E580 EPR Spectrometer | 2026-08-15 11:33:10 | 1 | |||||||||
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Medical College of Wisconsin Tissue Bank Resource Report Resource Website |
Medical College of Wisconsin Tissue Bank (RRID:SCR_027842) | biomaterial supply resource, tissue bank, material resource | College of American Pathologists-accredited biorepository that collects, processes, securely stores, and distributes human biospecimens (tissues and blood products) for medical research. Tissue Bank that is a CAP-accredited biorepository supporting four human consent programs. Provides fresh and frozen tissue and biological materials with known preanalytical variables to researchers as well as provides specialized processing and imaging services. | tissue bank, fresh and frozen tissue, biological materials, known preanalytical, human biospecimens, | has parent organization: Medical College of Wisconsin; Wisconsin; USA | Restricted | SCR_027842 | MCW Tissue Bank | 2026-08-15 11:33:02 | 0 | |||||||||
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GE: Signa Explorer 1.5 T MRI scanner Resource Report Resource Website |
GE: Signa Explorer 1.5 T MRI scanner (RRID:SCR_027841) | instrument resource | MRI scanner as medical imaging system used for detailed scans of the brain, spine, joints, heart, and other organs, focusing on high image quality, fast scans (using technologies like HyperSense), enhanced patient comfort (with Silent Suite for noise reduction and free-breathing options), and operational efficiency, making it suitable for diverse clinical needs like neuroimaging, orthopedics, and cardiovascular studies. It's designed to handle a broad range of applications and improve workflow, even for patients with MRI-conditional metal implants. | MRI scanner, medical imaging system, Tesla, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027841.pdf | SCR_027841 | , 1.5 T Signa Explorer MRI scanner (GE Healthcare), Signa Explorer 1.5 Tesla MRI scanner | 2026-08-15 11:33:12 | 0 | ||||||||||
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scHiCluster Resource Report Resource Website 1+ mentions |
scHiCluster (RRID:SCR_027854) | software toolkit, software resource | Software Python package for single-cell chromosome contact data analysis. It includes the identification of cell types (clusters), loop calling in cell types, and domain and compartment calling in single cells. Facilitates visualization and comparison of single-cell 3D genomes. | single-cell chromosome contact data analysis, single-cell, chromosome, contact, data analysis, | NHGRI R21 HG009274 | PMID:31235599 | Free, Available for download, Freely Available | SCR_027854 | 2026-08-15 11:33:02 | 2 |
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