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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2025. Commercial antibody supplier. Imgenex has merged with Novus Biologicals.
Proper citation: IMGENEX (RRID:SCR_001986) Copy
INECOL focuses on research on natural resources, conservation, and biodiversity, aiming to solve ecological problems and generate scientific knowledge.
Proper citation: Institute of Ecology; Xalapa; Mexico (RRID:SCR_027677) Copy
https://github.com/Core-Bioinformatics/bulkAnalyseR
Software R package for most bulk sequencing datasets. Creates shiny app for interactive data analysis and visualisation. Used for analysing and sharing bulk sequencing results.
Proper citation: bulkAnalyseR (RRID:SCR_027647) Copy
https://github.com/DiseaseTranscriptomicsLab/scStudio
Web-based application for comprehensive and modular scRNA-seq data analysis. to easily retrieve datasets from repositories housing most publicly available single-cell data. Future expansions of scStudio will integrate additional databases, such as the Human Cell Atlas.
Proper citation: scStudio (RRID:SCR_027618) Copy
https://microscopecentral.com/products/olympus-bx43-clinical-microscope-1
Olympus BX43 is a popular clinical and research grade microscope that can be configured for many different applications. Modular components enable you to customize the microscope for brightfield, polarization, phase contrast, and fluorescence. BX43 microscope utilizes a high color rendering white LED with a luminosity equivalent to a 30 W halogen lamp. The longlasting LED provides users a consistent color temperature at any brightness level.With an optional low magnification condenser, users can change the objective magnification from 2X to 100X (dry) without changing the condenser or moving the top lens.
Proper citation: Olympus: BX43 clinical microscope (RRID:SCR_027598) Copy
https://www.precise-tbi.org/cdes
Traumatic brain injury (TBI) Common Data Elements (CDEs) created by the PRE Clinical Interagency reSearch resourcE-TBI (PRECISE-TBI) group to harmonize (or merge) language and variables across the preclinical TBI neuroscience landscape.
Proper citation: PRECISE-TBI Preclinical CDEs (RRID:SCR_027597) Copy
https://novosparc.readthedocs.io/
Software package for flexible spatial reconstruction of single-cell gene expression with optimal transport. Framework for de novo spatial reconstruction of single-cell gene expression. Assigns cells to tissue locations using probabilistic/optimal-transport models, with or without prior marker information, and returns spatial maps and assignment probabilities.
Proper citation: novoSpaRc (RRID:SCR_027635) Copy
https://www.siemens-healthineers.com/urinalysis/systems/atellica-1500-automated-urinalysis-system
Atellica UAS 800 Analyzer is automated urine sediment analyzer designed to minimize the need for manual microscopy.
Proper citation: Siemens: Healthineers Atellica UAS 800 Analyzer (RRID:SCR_027593) Copy
Medical hospital-based research institute in Montreal, Quebec, Canada.
Proper citation: Jewish General Hospital Lady Davis Institute for Medical Research; Montreal; Canada (RRID:SCR_027625) Copy
American company in the life sciences and diagnostics business that is focused on selling to the pharmaceutical and biotechnology industries, especially in relation to approaches making use of new cell therapy or gene therapy developments.
Proper citation: Revvity Inc. (RRID:SCR_027779) Copy
https://www.bio-rad.com/fr-fr/sku/12015392-ptc-tempo-deepwell-thermal-cycler?ID=12015392
Conventional PCR instrument built with fixed 96-deepwell reaction block that accommodates reaction volumes of 10 ul to up to 125 µl.
Proper citation: Bio-Rad: PTC Tempo Deepwell Thermal Cycler (RRID:SCR_027704) Copy
https://www.bio-techne.com/p/simple-plex/ella-automated-immunoassay-system_600-100
Benchtop automated Ella platform utilizes microfluidic Simple Plex assay cartridge designed to perform all reagent additions, wash steps, and incubations under precisely controlled conditions to run ELISA assays. Available for plexing up to 8 analytes.
Proper citation: Bio-Techne: Simple Plex Ella Automated Immunoassay System (RRID:SCR_027757) Copy
https://cran.r-project.org/web/packages/XYomics/
Software R package for analysis of condition-specific sex differences in omics data. Includes functions for differential expression, interaction testing, and gene regulatory network analysis. Used for analysis of sex differences in omics data for complex diseases.
Proper citation: XYomics (RRID:SCR_027774) Copy
https://cran.r-project.org/package=AER
Software R package contains functions, data sets, examples, demos, and vignettes for the book Christian Kleiber and Achim Zeileis (2008), Applied Econometrics with R, Springer-Verlag, New York. ISBN 978-0-387-77316-2.
Proper citation: AER: Applied Econometrics with R (RRID:SCR_027778) Copy
https://cran.r-project.org/web/packages/ActivePathways/index.html
Software R package for analysing multiple omics datasets in the context of molecular pathways, biological processes and other types of gene sets.Method that first prioritises genes through multi-omics data fusion and then identifies enriched pathways with gene-level evidence from input datasets.
Proper citation: ActivePathways (RRID:SCR_027736) Copy
https://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.html
Software R package containing the full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31).
Proper citation: BSgenome Hsapiens UCSC hg38 (RRID:SCR_027738) Copy
https://smirnovgroup.wordpress.ncsu.edu/e580-a-shared-x-q-band-instrument/
Bruker ELEXSYS-E580 pulse X-/Q-band instrument offers state-of-the-art capabilities for both standard and cutting-edge EPR spectroscopy across a broad range of sample types and experimental needs. High-performance Electron Paramagnetic Resonance (EPR) spectrometer used for advanced research in chemistry, materials science, biochemistry, and physics, enabling studies of paramagnetic molecules, protein structures, quantum states, and materials by combining X-band (9-10 GHz) and Q-band (34 GHz) frequencies for high-resolution, sensitive pulse techniques.
Proper citation: Bruker: ELEXSYS-E580 pulse X-/Q-band system (RRID:SCR_027754) Copy
https://www.mcw.edu/departments/pathology-and-laboratory-medicine/research/mcw-tissue-bank
College of American Pathologists-accredited biorepository that collects, processes, securely stores, and distributes human biospecimens (tissues and blood products) for medical research. Tissue Bank that is a CAP-accredited biorepository supporting four human consent programs. Provides fresh and frozen tissue and biological materials with known preanalytical variables to researchers as well as provides specialized processing and imaging services.
Proper citation: Medical College of Wisconsin Tissue Bank (RRID:SCR_027842) Copy
MRI scanner as medical imaging system used for detailed scans of the brain, spine, joints, heart, and other organs, focusing on high image quality, fast scans (using technologies like HyperSense), enhanced patient comfort (with Silent Suite for noise reduction and free-breathing options), and operational efficiency, making it suitable for diverse clinical needs like neuroimaging, orthopedics, and cardiovascular studies. It's designed to handle a broad range of applications and improve workflow, even for patients with MRI-conditional metal implants.
Proper citation: GE: Signa Explorer 1.5 T MRI scanner (RRID:SCR_027841) Copy
https://github.com/zhoujt1994/scHiCluster
Software Python package for single-cell chromosome contact data analysis. It includes the identification of cell types (clusters), loop calling in cell types, and domain and compartment calling in single cells. Facilitates visualization and comparison of single-cell 3D genomes.
Proper citation: scHiCluster (RRID:SCR_027854) Copy
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