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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GoldWave Resource Report Resource Website 50+ mentions |
GoldWave (RRID:SCR_016189) | data analysis software, data processing software, software application, software resource | Software that enables users to digitally edit audio files. GoldWave can record, edit, and analyze audio for research-related purposes. | audio, sound, analysis, acquisition, visualization, record, edit, analysis, auditory | Commercially available, Available for purchase | SCR_016189 | SciCrunch Registry | 2026-10-17 01:29:22 | 88 | |||||||||||
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Scientific Filesystem Resource Report Resource Website 1+ mentions |
Scientific Filesystem (RRID:SCR_016105) | SCIF | data management software, data or information resource, knowledge environment resource, portal, software application, software resource | Organizational software that supports exposure of executables and metadata for discoverability. The software includes a known filesystem structure, a definition for a set of environment variables describing it, and functions for generation of the variables and interaction with the libraries, metadata, and executables located within. | organization, executable, metadata, file, library, interaction, container, file, data environment | Public, Freely available, Tutorial available | https://github.com/sci-f/sci-f.github.io | SCR_016105 | SciCrunch Registry | The Scientific Filesystem, Scientific Filesystem (SCIF) | 2026-10-17 01:29:04 | 1 | ||||||||
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Prucka CardioLab System Resource Report Resource Website |
Prucka CardioLab System (RRID:SCR_016180) | resource | Prucka CardioLab system delivers the EP data and visualization we need for electrophysiological study and catheter ablation. | hardware, instrument, equipment, cardiology, heart, electrophysiology, catheter, ablation | SCR_016180 | SciCrunch Registry | 2026-10-17 01:29:04 | 0 | ||||||||||||
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LINCS Joint Project - Breast Cancer Network Browser Resource Report Resource Website 1+ mentions |
LINCS Joint Project - Breast Cancer Network Browser (RRID:SCR_016181) | LJP-BCNB, LJP, BCNB | data access protocol, service resource, software resource, web service | Interactive on line tool where signatures are tagged with user selected metadata and external transcript signatures are projected onto network. Browser to visualize signatures from breast cancer cell lines treated with single molecule perturbations. | breast, cancer, tissue, cluster, drug, perturbation, cell, line, gene, expression |
is related to: L1000 Characteristic Direction Signature Search Engine is related to: LINCS Project |
Breast cancer | NCI U54 CA189201; NHGRI U54 HG006093; NHLBI U54 HL127365; NHLBI U54 HL127624 |
PMID:29084964 | Free, Freely available | https://github.com/MaayanLab/LJP | SCR_016181 | SciCrunch Registry | LINCS Joint Project, Breast Cancer Network Browser | 2026-10-17 01:29:22 | 1 | ||||
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IHM-dictionary Resource Report Resource Website 1+ mentions |
IHM-dictionary (RRID:SCR_016186) | software resource | Software resource for a data representation for integrative/hybrid methods of modeling macromolecular structures. | macromolecule, mmcif, pdb, protein, database, databank, spectroscopy, microscopy, crystallography, proteomic | is related to: PDB-Dev | NSF DBI-1519158 | Free, Available for download | SCR_016186 | SciCrunch Registry | 2026-10-17 01:29:04 | 4 | |||||||||
|
PDB-Dev Resource Report Resource Website 10+ mentions |
PDB-Dev (RRID:SCR_016185) | data repository, service resource, storage service resource | Data repository for integrative/hybrid structural models of macromolecules and their assemblies. This includes atomistic models as well as multi-scale models consisting of different coarse-grained representations. | protein, prototype, deposition, integration, hybrid, model, macromolecule, assembly, crystallography, spectroscopy, microscopy, |
is related to: IHM-dictionary has parent organization: Worldwide Protein Data Bank (wwPDB) has parent organization: Rutgers University; New Jersey; USA |
NSF DBI-1519158 | Account required, Freely available, The research community can contribute to this resource | SCR_016185 | SciCrunch Registry | 2026-10-17 01:29:09 | 36 | |||||||||
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GOTrack Resource Report Resource Website 1+ mentions |
GOTrack (RRID:SCR_016399) | data access protocol, data or information resource, database, software resource, web service | Open source web-based system and database that provides access to historical records and trends in the Gene Ontology (GO) and GO annotations (GOA). Used for monitoring changes in the Gene Ontology and their impact on genomic data analysis. | database, system, access, historical, monitor, record, gene, genomic, data, analysis, ontology, annotation, bioinformatics |
is listed by: OMICtools is related to: University of British Columbia; British Columbia; Canada |
Canadian Foundation for Innovation infrastructure ; CIHR ; NIH MH111099; NSERC Discovery Grant |
DOI:10.1101/320861 | Free, Available for download, Freely available | https://github.com/PavlidisLab/gotrack, https://omictools.com/gotrack-tool | SCR_016399 | SciCrunch Registry | 2026-10-17 01:29:26 | 1 | |||||||
|
Archive of Data on Disability to Enable Policy (ADDEP) Resource Report Resource Website |
Archive of Data on Disability to Enable Policy (ADDEP) (RRID:SCR_016315) | ADDEP | data or information resource, data repository, service resource, storage service resource | Provides access to data including wide range of topics related to disability. ADDEP data can be used to better understand and inform the implementation of Americans with Disabilities Act and other disability policies. | Data, access, disability | is recommended by: National Library of Medicine | NIBIB ; NICHD ; NINDS |
SCR_016315 | SciCrunch Registry | Archive of Data on Disability to Enable Policy | 2026-10-17 01:29:24 | 0 | ||||||||
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Avanti Polar Lipids Resource Report Resource Website 500+ mentions |
Avanti Polar Lipids (RRID:SCR_016391) | APL | commercial organization | Supplier of polar lipids. | lipid, fat, molecule, supply, distributer, lipidomic, reagent, adjuvant, immunotherapy | ISNI: 0000 0004 0595 5711, Wikidata: Q30284101, grid.423085.8 | https://ror.org/03n3jmy18 | SCR_016391 | SciCrunch Registry | Avanti, Avanti Lipids, , Avanti Polar Lipids Inc | 2026-10-17 01:29:12 | 566 | ||||||||
|
RELION Resource Report Resource Website 100+ mentions |
RELION (RRID:SCR_016274) | data analysis software, data processing software, software application, software resource, standalone software | Software for determination of cryo-EM structures. It employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy. | cryo, cryogenic, cryo em, determination, analysis, bayesian, statistic, map, maximum a posteriori, electron, cryomicroscopy |
is listed by: Debian is listed by: OMICtools |
UK Medical Research Council | PMID:23000701 | Free, Available for download, Tutorial available | OMICS_15597 | https://sources.debian.org/src/relion-bin+mpi+gui/ | SCR_016274 | SciCrunch Registry | RELION, REgularised LIkelihood OptimisatioN, RELION-3 | 2026-10-17 01:29:10 | 440 | |||||
|
HIRN Coordinating Center Resource Report Resource Website |
HIRN Coordinating Center (RRID:SCR_016395) | HIRN CC, HIRNCC | consortium, data or information resource, organization portal, portal | Consortium that provides infrastructure to promote communication and collaboration among current and future HIRN participants, facilitating scientific advances and the sharing of data, tools, and reagents among HIRN members and the research community at large. | coordination, hirn, human, islet, research, center, administration | is organization facet of: Human Islet Research Network (HIRN) | NIDDK U01 DK104162 | SCR_016395 | SciCrunch Registry | Human Islet Research Center Coordinating Center | 2026-10-17 01:29:12 | 0 | ||||||||
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Vensim Resource Report Resource Website 10+ mentions |
Vensim (RRID:SCR_016394) | simulation software, software application, software resource | Simulation software for improving the performance of real systems. Used for developing, analyzing, and packaging dynamic feedback models. | performance, system, Ventana Systems Inc, model, modelling, analysis | Commercially available, Available for purchase | SCR_016394 | SciCrunch Registry | 2026-10-17 01:29:05 | 14 | |||||||||||
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AngioTool Resource Report Resource Website 50+ mentions |
AngioTool (RRID:SCR_016393) | data analysis software, data processing software, software application, software resource | Software that performs quantitative analysis of angiogenesis. It specializes in quantitative assessment of various vessel morphometric and spatial parameters, including vessel length and density, branching index, lacunarity, etc. | vessel, angio, angiogenesis, characteristic, morphology | Biotechnology and Biological Sciences Research Council BB/C520712; MRC G0700740 |
PMID:22110636 | Open source, Free, Available for download | https://www.researchgate.net/publication/51824175_A_Computational_Tool_for_Quantitative_Analysis_of_Vascular_Networks | SCR_016393 | SciCrunch Registry | 2026-10-17 01:29:26 | 60 | ||||||||
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AphasiaBank Resource Report Resource Website 1+ mentions |
AphasiaBank (RRID:SCR_016317) | data or information resource, data repository, database, service resource, storage service resource | Shared database of multimedia interactions for the study of communication in aphasia.Access to the data in AphasiaBank is password protected and restricted to members of the AphasiaBank consortium group. | Multimedia, interaction, communication, aphasia | is recommended by: National Library of Medicine | NIDCD R01 -DC008524 | Restricted | SCR_016317 | SciCrunch Registry | , Aphasia Bank, AphasiaBank | 2026-10-17 01:29:11 | 9 | ||||||||
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OmicsBean Resource Report Resource Website 100+ mentions |
OmicsBean (RRID:SCR_016322) | data analysis software, data analytics software, data processing software, software application, software resource | Software tool for multi-omics data analysis that can perform complex and personalized analysis. Network regulation and molecular mechanism models can be customized according to the requirements of the users. | GeneForHealth Biotech Inc (GFK), data, analysis, genome, proteome, metabolome, network, molecular, mechanism, model, collect, store, analytic, multi, omic | Commercially available, Demo available | SCR_016322 | SciCrunch Registry | 2026-10-17 01:29:24 | 189 | |||||||||||
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BLINK Resource Report Resource Website 1+ mentions |
BLINK (RRID:SCR_016288) | algorithm resource, data analysis software, data processing software, software application, software resource | Software for next level of genome wide association studies with both individuals and markers in millions. The method releases the requirement that causative genes are evenly distributed on genome and consequently boosts statistical power. | GWAS, SNP, dataset, r, genome, bayesian, linkage, nested, keyway, statistic, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Tutorial available | biotools:BLINK | https://bio.tools/BLINK | SCR_016288 | SciCrunch Registry | BLINK (Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway) | 2026-10-17 01:29:03 | 2 | |||||||
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Nighres Resource Report Resource Website 1+ mentions |
Nighres (RRID:SCR_016287) | data processing software, image analysis software, software application, software resource, software toolkit | Software package for processing of high-resolution neuroimaging data. Nighres is a community-developed project that aims to make neuroscience data tools easier to install, use and extend. | neuroimaging, python, high-resolution, MRI, ultra-high, field, laminar, brain | Free, Available for download, Runs on Linux | http://nighres.readthedocs.io/en/latest/ | https://github.com/juhuntenburg/laminar_python | SCR_016287 | SciCrunch Registry | nighres | 2026-10-17 01:29:24 | 3 | ||||||||
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ANNOgesic Resource Report Resource Website 10+ mentions |
ANNOgesic (RRID:SCR_016326) | data analysis software, data processing software, software application, software resource, software toolkit, standalone software | Software tool for bacterial/archaeal RNA-Seq based genome annotations. Used for integrating, detecting, predicting, and grouping RNA-Seq data. | bacterial, archaeal, RNA, sequencing, data, analysis, genome, annotation, statistic, visualization, protein, interaction, prediction, grouping, go, ontology, gene, differential, circular |
is related to: Infernal is related to: Vienna RNA is related to: Biopython is related to: MEME Suite - Motif-based sequence analysis tools is related to: Segemehl |
Free, Freely available, Available for download | SCR_016326 | SciCrunch Registry | 2026-10-17 01:29:04 | 10 | ||||||||||
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Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease Resource Report Resource Website 1+ mentions |
Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease (RRID:SCR_016282) | data processing software, image analysis software, registration software, software application, software resource | Software based on robust registration and simultaneous hippocampal segmentation and longitudinal marker classification of brain MRI of an arbitrary number of time points. The framework comprises two parts: a longitudinal segmentation and a longitudinal classification step. | longitudinal, segmentation, hippocampus, mri, atrophy, atlas, classification, matlab | Free, Available for download | SCR_016282 | SciCrunch Registry | 2026-10-17 01:29:03 | 1 | |||||||||||
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HUMAnN2 Resource Report Resource Website 50+ mentions |
HUMAnN2 (RRID:SCR_016280) | HUMAnN2 | data analysis software, data processing software, sequence analysis software, software application, software resource | Software for profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data Used for millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. | microbe, matagenome, metatranscription, sequence, short, read, dna, rna, metabolism | Free, Available for download, Tutorial available, Acknowledgement requested | SCR_016280 | SciCrunch Registry | The HMP Unified Metabolic Analysis Network 2 | 2026-10-17 01:29:24 | 82 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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