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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.elementbiosciences.com/
Biotechnology company in San Diego, California focused on developing disruptive DNA sequencing and other omics technology for research markets.
Proper citation: Element Biosciences (RRID:SCR_026453) Copy
https://bioconductor.org/packages/release/data/annotation/html/hgu133plus2.db.html
Software R package for Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data assembled using data from public repositories.
Proper citation: hgu133plus2 (RRID:SCR_026448) Copy
https://www.pop-bioimaging.com/chemiluminescence
High-sensitivity imaging device used to imaging device for detecting and analysis signals in biological samples, commonly for Western blotting and other luminescent assays.
Proper citation: Linetogel: Vu-C Chemiluminescence Imaging System (RRID:SCR_026465) Copy
https://www.ionicon.com/products/details/ptr-tof-1000-ultra
IONICON ultra-sensitive PTR-TOF-MS - Trace VOC Analyzer,the PTR-TOF 1000 ultra, is the new benchmark for robust and compact real-time volatile organic compounds analyzer. Based on PTR-TOF 1000 platform, the PTR-TOF 1000 ultra offers outstanding sensitivity.
Proper citation: IONICON: PTR-TOF 1000 ultra analyzer (RRID:SCR_026459) Copy
https://www.microscopesinternational.com/products/mxii/uscopemxii-20.aspx
Small size uScopeMXII-20 digital microscope comes with 20x/0.4NA 160mm conjugate objective. This model is suited to applications where very high depth of field is required. The uScopeMXII-20 has wider depth of field than higher power models of the uScopeMXII. So, tissue samples and smears can be thicker with more of the image in focus. This unit is able to produce very high-quality digital microscope while browsing or scanning an area of interest.
Proper citation: Microscopes International: uScopeMXII-20 Digital Microscope (RRID:SCR_026399) Copy
Uppsala Monitoring Centre, located in Uppsala, Sweden, is the field name for the World Health Organization Collaborating Centre for International Drug Monitoring. UMC works by collecting, assessing and communicating information from member countries' national pharmacovigilance centres in regard to benefits, harm, effectiveness and risks of drugs since 1978.
Proper citation: Uppsala Monitoring Centre; Uppsala; Sweden (RRID:SCR_026434) Copy
https://norm.btm.umed.pl/about
Web-based tool that screens for experiment-specific reference genes. Tool applying GPU-accelerated computing for determination of internal references in microRNA transcription studies.
Proper citation: NormiRazor (RRID:SCR_026436) Copy
Provides methodology to evaluate activity and efficacy of new cancer therapeutics in solid tumors, using validated and consistent criteria to assess changes in tumor burden. RECIST Working Group comprises representatives of the European Organization for Research and Treatment of Cancer (EORTC), National Cancer Institute (NCI) of the United States and Canadian Cancer Trials Group (CCTG), as well as several pharmaceutical companies. Its mission is to ensures that RECIST undergoes continued testing, validation and updating.
Proper citation: Response Evaluation Criteria in Solid Tumors (RRID:SCR_026435) Copy
https://CRAN.R-project.org/package=timeROC
Software R package for estimation of time-dependent ROC curve and area under time dependent ROC curve in the presence of censored data, with or without competing risks. Confidence intervals of AUCs and tests for comparing AUCs of two rival markers measured on the same subjects can be computed, using the iid-representation of the AUC estimator.
Proper citation: timeROC (RRID:SCR_026444) Copy
https://CRAN.R-project.org/package=hdf5r
Software R package as data model, library and file format for storing and managing large amounts of data.
Proper citation: hdf5r (RRID:SCR_026447) Copy
https://www.magstim.com/product/rapid%C2%B2/
Device to generate repetitive transcranial magnetic stimulation and is used in numerous fundamental and clinical research studies worldwide. Combines stimulation frequencies from 1Hz to 100Hz with touch screen interface which controls every aspect of stimulator’s control and operation.
Proper citation: Magstim: Rapid2 stimulator (RRID:SCR_026437) Copy
https://www.openbiosystems.com/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. Open Biosystems offers products that span Genomics, RNAi and Antibodies. Building on the rapid sharing model that is at the core of the Human Genome Project, Open Biosystems collaborates with some of the most innovative life science investigators working today. We partner with them to bring to market new productsthey have often pioneered the new resources in their own lab, and we prepare it for widespread use and then provide access to the research community. Delivery of genetic content is our most recent technological breakthrough. Recently, we brought to market the Tranz-vector system, the safest human-based lentiviral delivery technology. Further supplementing our already strong line of RNA interference (RNAi) and complementary DNA (cDNA) products, this technology provides investigators with superior delivery capabilities for high-quality cellular screening. The combination or our unique Tranz-vector system and whole genome RNAi and cDNA content enables our customers to perform drug target validation on a large scale. With our genomics resources, Open Biosystems provides the content investigators utilize to unlock the functions of human genes and their relationships to normal and disease development. We offer the most complete gene library in the industry. This novel library consists of several full length cDNA and open reading frame collections. Most prominently among these is the Mammalian Gene Collection (MGC), the industry's gold standard gene catalog. The discovery of RNA interference has revolutionized the way investigators approach the studies of gene expression, regulation and interactions, particularly as it relates to drug development. Our collaboration with Drs. Greg Hannon (CSHL) and Steve Elledge (Harvard) has led the way in the evolution of the short hairpin RNA (shRNA) technologies to provide the life science community with whole genome resources for human, mouse and rat with a multitude of technology and delivery advantages.
Proper citation: Open Biosystems (RRID:SCR_000808) Copy
http://radiology.arizona.edu/CGRI/
Biomedical technology resource center that develops new gamma-ray imaging instruments and techniques that yield substantially improved spatial and temporal resolutions. The Center makes its imagers and expertise available to a wide community of biomedical and clinical researchers through collaborative and service-oriented interactions. The collaborative research applies these new imaging tools to basic research in functional genomics, proteomics, cancer, cardiovascular disease and cognitive neuroscience, and to clinical research in tumor detection and other selected topics. There are five core research projects: * Detector technology research and development * Reconstruction algorithms and system modeling * Data acquisition, signal processing, and system development * Image-quality assessment and system optimization * Techniques for molecular imaging
Proper citation: Center for Gamma Ray Imaging (RRID:SCR_001384) Copy
Privately held company that develops and produces antibodies, ELISA kits, ChIP kits, proteomic kits, and other related reagents used to study cell signaling pathways that impact human health.
Proper citation: Cell Signaling Technology (RRID:SCR_002071) Copy
https://www.toyobo-global.com/
Japanese company that began as a textile manufacturer in 1882 and has expanded to become a global provider of high-function products, including films, functional polymers, industrial materials, and biotechnology products such as enzymes and diagnostic reagents. The company's business is organized around its core technologies in polymerization, modification, processing, and biotechnology, allowing it to contribute to fields like healthcare, environment, and electronics.
Proper citation: TOYOBO (RRID:SCR_027440) Copy
https://www.bioconductor.org/packages/release/bioc/html/sesame.html
Software R package for reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions.
Proper citation: SeSAMe (RRID:SCR_027388) Copy
https://github.com/SciCrunch/Antibody-Watch
Text mining antibody specificity from literature. Helps researchers identify potential problems with antibody specificity. By mining the scientific literature and linking findings to Research Resource Identifiers (RRIDs), it provides alerts on antibodies that may yield unreliable results, supporting reproducibility in biomedical research.
Proper citation: Antibody Watch (RRID:SCR_027424) Copy
https://www.revvity.com/product/ivis-spectrum-2-imaging-system-cls158738
In vivo optical imaging system used in preclinical research to non-invasively monitor and quantify biological processes in living animals over time. Designed with innovative camera with patented coating that delivers high sensitivity 2D and 3D bioluminescence and fluorescence imaging capabilities.
Proper citation: Revvity: IVIS Spectrum 2 In Vivo Imaging System (RRID:SCR_027425) Copy
https://biodataai.uth.edu/BRAINCELL-AID
Web service providing annotations for brain cell type–specific marker gene sets derived from single-cell RNA-seq data spanning the entire mouse brain. It uses a multi-agent AI framework that combines fine-tuned large language models with retrieval-augmented generation, producing biologically grounded annotations supported by peer-reviewed literature.
Proper citation: BRAINCELL-AID (RRID:SCR_027398) Copy
https://jaaba.sourceforge.net/
Web application to create variety of automatic behavior classifiers. These classifiers input the animals' trajectories computed by tracking system, and they output time series indicating whether each animal is performing a given behavior in each video frame. Interactive machine learning for automatic annotation of animal behavior. Used to automatically compute interpretable, quantitative statistics describing video of behaving animals.
Proper citation: Janelia Automatic Animal Behavior Annotator (RRID:SCR_027430) Copy
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