Tools   Select Another Resource Report Type

https://www.ie-freiburg.mpg.de/

Interdisciplinary research institute that conducts basic research in modern immunobiology, developmental biology and epigenetics.

Proper citation: Max Planck Institiute of Immunobiology and Epigenetics; Freiburg; Germany (RRID:SCR_017170) Copy   

•   Source: SciCrunch Registry
  

http://kim.bio.upenn.edu/software/pivot.shtml

Software R package for interactive analysis and visualization of transcriptomics data. Operating systems are macOS, Linux, Windows.

Proper citation: PIVOT software (RRID:SCR_017210) Copy   

•   Source: SciCrunch Registry
  

http://en.vhir.org/portal1/article_menu_serveis.asp?s=serveis&contenttypeid=43&contentid=1250&t=Presentation

Core at Vall dHebron Institut de Recerca, Barcelona, Spain to provide data analysis, softwares and training programs in statistics and bioinformatics for clinical research at VHIR.

Proper citation: Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility (RRID:SCR_017175) Copy   

•   Source: SciCrunch Registry
  

https://genome.duke.edu/cores-and-services/genomic-analysis-and-bioinformatics

Genomic Analysis and Bioinformatics core for data analysis associated with performing complex and data intensive projects in life science research of Duke University and Duke Medical School. Provides expertise, training, data analysis in next generation sequencing, array and proteomic based technologies.

Proper citation: Duke University Omics Data Analysis Core Facility (RRID:SCR_017174) Copy   

•   Source: SciCrunch Registry
  

https://biccn.org/data

Searchable table of datasets. Data generated from projects through BRAIN Initiative Cell Census Network. Datasets can be filtered by species, research investigator, grant number or experimental technique. Includes links to data directories at data archives and links to protocols.

Proper citation: BICCN Cell Registry (RRID:SCR_017267) Copy   

•   Source: SciCrunch Registry
  

https://github.com/cwatson/braingraph/

Software R package for performing graph theory analyses of brain MRI data.

Proper citation: brainGraph (RRID:SCR_017260) Copy   

•   Source: SciCrunch Registry
  

https://glomcon.org

Consortium to bring together clinicians, pathologists, researchers, and biotech innovators to create scalable network of stakeholders interested in helping patients with glomerular kidney disease. Makes collective expertise of its members available for discussion of individual cases, provides infrastructure for biomarker studies, enables genomic research, and facilitates clinical trials.

Proper citation: Glomerular Disease Study & Trial Consortium (RRID:SCR_017264) Copy   

•   Source: SciCrunch Registry
  

https://github.com/drchrisch/SynapseLocator

Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface.

Proper citation: SynapseLocator (RRID:SCR_017263) Copy   

•   Source: SciCrunch Registry
  

http://www.biomexsolutions.co.uk/morda

Software package for molecular replacement protein structure solution using X-ray data. Includes database and set of programs for structure solution. Automatic molecular replacement pipeline.

Proper citation: MoRDa (RRID:SCR_017278) Copy   

•   Source: SciCrunch Registry
  

https://www.uke.de/index.html

Teaching hospital of University of Hamburg located in Eppendorf, Hamburg, Germany.

Proper citation: University Medical Center Hamburg-Eppendorf (RRID:SCR_017156) Copy   

•   Source: SciCrunch Registry
  

http://clustalw.ddbj.nig.ac.jp/index.php

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.Web sevice of ClustalW provided by DNA data bank of Japan.

Proper citation: ClustalW (RRID:SCR_017277) Copy   

•   Source: SciCrunch Registry
  

http://www.brainimagelibrary.org

Public, NIH-funded repository and analysis ecosystem for brain microscopy data, designed to store, share, and process massive volumetric datasets. It enables researchers to access whole-brain images, neuron morphologies, and spatial data without needing to download, fostering collaborative discovery. Used to deposit, analyze, mine, share and interact with large brain image datasets.

Proper citation: Brain Image Library (RRID:SCR_017272) Copy   

•   Source: SciCrunch Registry
  

http://barc.wi.mit.edu

Core provides consultation, training, software and educational tools in bioinformatics and graphics.

Proper citation: Whitehead Institute Bioinformatics and Research Computing Core Facility (RRID:SCR_017150) Copy   

•   Source: SciCrunch Registry
  

https://ous-research.no/bioinformatics/

Core facility provides high throughput sequencing data analysis, metagenomics data analysis, proteomics data analysis, protein structure analysis, functional genomics, programming, scripting, and database or web services.

Proper citation: Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility (RRID:SCR_017152) Copy   

•   Source: SciCrunch Registry
  

https://bossdb.org/

BossDB (Brain Observatory Storage Service and Database) is a cloud-based ecosystem for the storage and management of public large-scale volumetric neuroimaging and connectomics datasets. This includes volumetric Electron Microscopy and X-Ray Micro/Nanotomography data with support for multi-channel image data, segmentations, annotations, meshes, and connectomes. BossDB integrates with community resources for data access, processing, visualization, and analysis, and includes an API that enables metadata management, rendering, datatype conversions, and ingest.

Proper citation: Brain Observatory Storage Service and Database (BossDB) (RRID:SCR_017273) Copy   

•   Source: SciCrunch Registry
  

https://www.spindustries.com/

Commercial organization located in Warminster, Pennsylvania, USA is manufacturer of specialty equipment, scientific glassware, laboratory and lab safety supplies, and home healthcare products serving pharmaceutical, biotechnology, educational, industrial, OEM, and commercial markets under market leading brand names. Products include pharmaceutical, scientific research, industrial, aeronautic, semiconductor and healthcare. Flagship brands are SP Scientific, SP Scienceware, and SP Ableware.

Proper citation: SP Industries (RRID:SCR_017368) Copy   

•   Source: SciCrunch Registry
  

https://github.com/BDI-pathogens/phyloscanner

Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity.

Proper citation: phyloscanner (RRID:SCR_017400) Copy   

•   Source: SciCrunch Registry
  

https://www.oxinst.com/

Commercial organization located in Abingdon, United Kingdom for high technology products. Manufactures instruments for agriculture, astronomy, automotive, aerospace, bio-imaging, life science, chemical and catalysis, energy generation and storage, forensics, environmental industries, geology, metallurgy, pharmacy, photonics, polymers, quantum technology, data storage, and microelectronics. Products are divided into atom force microscopy, electron microscopy, deposition and etch tools, low temperature systems, optical imaging, nuclear magnetic resonance, MRI and CT servicing, Modular optical spectroscopy, and X-Ray.

Proper citation: Oxford Instruments (RRID:SCR_017366) Copy   

•   Source: SciCrunch Registry
  

https://github.com/raamana/neuropredict

Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers.

Proper citation: neuropredict (RRID:SCR_017405) Copy   

•   Source: SciCrunch Registry
  

https://github.com/SciCrunch/NIF-Ontology/tree/neurons/ttl

An ontology for describing the complex phenotypes of neurons.

Proper citation: Neuron Phenotype Ontology (RRID:SCR_017403) Copy   

•   Source: SciCrunch Registry