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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cooperative Study Group for Autoimmune Disease Prevention Resource Report Resource Website |
Cooperative Study Group for Autoimmune Disease Prevention (RRID:SCR_006803) | CSGADP | knowledge environment, resource | Collaborative network of investigators with a focus on prevention of autoimmune disease, defined as halting the development of autoimmune disease prior to clinical onset by means other than global immunosuppression, and an emphasis on Type 1 diabetes. Its mission is to engage in scientific discovery that significantly advances knowledge for the prevention and regulation of autoimmune disease. The specific goals enunciated in pursuit of this mission are: * To create improved models of disease pathogenesis and therapy to better understand immune mechanisms that will provide opportunities for prevention strategies * To use these models as validation platforms with which to test new tools applicable to human studies * To encourage core expertise and collaborative projects designed for rapid translation from animal to human studies, emphasizing the development of surrogate markers for disease progression and/or regulation which can be utilized in the context of clinical trials | prevention, clinical, immune, model, disease pathogenesis, therapy |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Type 1 diabetes, Diabetes, Autoimmune disease | NIAID ; NIDDK ; NICHD ; NIH Office of Research on Womens Health ; Juvenile Diabetes Research Foundation International |
nlx_152797 | SCR_006803 | 2026-09-19 12:57:53 | 0 | |||||||
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eXpression2Kinases Resource Report Resource Website 1+ mentions |
eXpression2Kinases (RRID:SCR_016307) | X2K | software application, software resource | Software tool to produce inferred networks of transcription factors, proteins, and kinases predicted to regulate the expression of the inputted gene list by combining transcription factor enrichment analysis, protein-protein interaction network expansion, with kinase enrichment analysis. It provides the results as tables and interactive vector graphic figures. | inferred, network, transcription, factor, protein, kinase, regulate, expression, gene, analysis, combine, bio.tools |
is listed by: Debian is listed by: bio.tools |
NCRR KL2 RR029885; NIDDK P01 DK056492; NIDDK R01 DK088541; NIDDK RC4DK090860; NIGMS P50 GM071558; NLM RC2 LM010994 |
PMID:22080467 | Open source, Free, Freely available, Available for download | biotools:x2k | https://bio.tools/x2k, http://www.maayanlab.net/X2K/ | SCR_016307 | eXpression2Kinases, X2K | 2026-09-19 12:58:14 | 6 | ||||
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Sparse Inverse Covariance Estimation for Ecological Association Inference Resource Report Resource Website 10+ mentions |
Sparse Inverse Covariance Estimation for Ecological Association Inference (RRID:SCR_022646) | SPIEC-EASI | software resource, software toolkit | Software R package estimates inverse covariance matrix from sequencing data.Statistical method for inference of microbial ecological networks from amplicon sequencing datasets. | inverse covariance matrix estimation, sequencing data, microbial ecological networks inference, amplicon sequencing datasets microbial ecological networks, | NIAID T32AI007180; NIDDK R01 DK103358; NIGMS RO1 GM63270; Simons Foundation |
PMID:25950956 | Free, Available for download, Freely available | SCR_022646 | SParse InversE Covariance Estimation for Ecological Association Inference | 2026-09-19 12:58:22 | 12 | |||||||
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Teddy study IA prediction Resource Report Resource Website 1+ mentions |
Teddy study IA prediction (RRID:SCR_023303) | software resource, software toolkit | Software package to impute gene expression for all participants, whether they have partially or completely missing gene expression. | impute gene expression, gene expression, gene expression prediction | is related to: TEDDY | NIDDK U24DK097771 | DOI:10.1093/bib/bbac537 | Free, Available for download, Freely available | SCR_023303 | 2026-09-19 12:58:25 | 1 | ||||||||
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AccuCor Resource Report Resource Website 10+ mentions |
AccuCor (RRID:SCR_023046) | data processing software, software application, software resource | Software as isotope natural abundance correction algorithm that is needed especially for high resolution mass spectrometers. Natural abundance correction of mass spectrometer data. | Natural abundance correction, mass spectrometer data, isotope natural abundance correction algorithm, high resolution mass spectrometers | NCI CA211437; NCI R01 CA163591; NIDDK P30DK019525; U. S. Department of Energy |
PMID:28471646 | Free, Available for download, Freely available | https://github.com/XiaoyangSu/AccuCor | SCR_023046 | 2026-09-19 12:56:15 | 27 | ||||||||
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Secrepedia Resource Report Resource Website |
Secrepedia (RRID:SCR_022590) | data or information resource, database, portal, project portal | Encyclopedia of white and brown adipocyte secretome in mouse models and humans as key prerequisite to elucidating role of these mediators in normal physiology and disease. | Encyclopedia, white and brown adipocyte secretome, mouse models and humans, normal physiology and disease | is listed by: NIDDK Information Network (dkNET) | type 2 diabetes, Diabetes, obesity | NIDDK | Free, Freely available | SCR_022590 | 2026-09-19 12:56:15 | 0 | ||||||||
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SpheroScan Resource Report Resource Website 1+ mentions |
SpheroScan (RRID:SCR_023886) | data processing software, image analysis software, software application, software resource | Software tool for analyzing images of spheroids. Designed to streamline process of spheroid segmentation, area calculation, and downstream analysis of spheroid image data, and can help to standardize and accelerate analysis of spheroid assay results. | 3D spheroids, spheroids image, spheroid segmentation, spheroid image data, | Else Kröner-Fresenius-Stiftung ; NIDDK R01 DK077195; NIDDK R01 DK127673; Swiss National Science Foundation ; Wings for Life Spinal Cord Research Foundation |
Free, Available for download, Freely available | SCR_023886 | 2026-09-19 12:56:16 | 1 | ||||||||||
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APA-Scan Resource Report Resource Website |
APA-Scan (RRID:SCR_022974) | data analysis software, data processing software, data visualization software, software application, software resource | Software Python tool for detection and visualization of annotated and potential alternative polyadenylation events in downstream 3'-UTR of gene among two different biological conditions. Used for detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. | annotated and potential alternative polyadenylation events, gene downstream 3'-UTR, RNA-seq and 3'-end-seq data, two different biological conditions, polyadenylation events | NIDDK DK097771; NIGMS R01GM113952; NSF FET2003749 |
PMID:36171568 | Free, Available for download, Freely available | SCR_022974 | 2026-09-19 12:55:26 | 0 | |||||||||
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GeneRanger Resource Report Resource Website |
GeneRanger (RRID:SCR_023622) | data access protocol, software resource, web service | Web server application that provides access to processed data about expression of human genes and proteins across human cell types, tissues, and cell lines from several atlases. Used to explore single gene expression across tissues and cell types. | explore single gene expression, gene expression across tissues and cell types, gene expression, |
is related to: TargetRanger has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24CA224260; NCI U24CA264250; NCI U24CA271114; NIDDK R01DK131525; NIDDK RC2DK131995; NIH Office of the Director OT2OD030160 |
PMID:37166966 | Free, Freely available | SCR_023622 | 2026-09-19 12:55:36 | 0 | ||||||||
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TargetRanger Resource Report Resource Website 1+ mentions |
TargetRanger (RRID:SCR_023621) | data access protocol, software resource, web service | Web server application that identifies targets from user inputted RNA-seq samples collected from cells we wish to target. By comparing inputted samples with processed RNA-seq and proteomics data from several atlases, TargetRanger identifies genes that are highly expressed in target cells while lowly expressed across normal human cell types, tissues, and cell lines. | identify targets, identify genes, user inputted RNA-seq samples, target cells, proteomics data, human cells, |
is related to: GeneRanger has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24CA224260; NCI U24CA264250; NCI U24CA271114; NIDDK R01DK131525; NIDDK RC2DK131995; NIH Office of the Director OT2OD030160 |
PMID:37166966 | Free, Freely available | https://maayanlab.github.io/Workshop.io/generanger | SCR_023621 | 2026-09-19 12:55:36 | 2 | |||||||
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Indiana University Cooperative Center of Excellence in Hematology Resource Report Resource Website |
Indiana University Cooperative Center of Excellence in Hematology (RRID:SCR_015343) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center for hematology research. It provides services through four scientific core facilities: the Experimental Mouse Resources Core, the Optical Microscopy Services Core, the Angiogenesis Core, and the Flow Cytometry Core in addition to the Enrichment Program of the Center. | hematology research, hematology research center, online portal, niddk |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA is parent organization of: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core is parent organization of: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core is parent organization of: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core has organization facet: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core has organization facet: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core has organization facet: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core has organization facet: Indiana University School of Medicine Flow Cytometry Core Facility is organization facet of: Hematology Centers |
NIDDK U54DK106846 | Available to the research community | SCR_015343 | 2026-09-19 12:55:14 | 0 | |||||||||
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Boston Children's Hospital Center of Excellence in Molecular Hematology Resource Report Resource Website |
Boston Children's Hospital Center of Excellence in Molecular Hematology (RRID:SCR_015348) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center investigating molecular hematology through mouse and zebrafish models. | hematology research, hematology research center, online portal |
is listed by: NIDDK Information Network (dkNET) is parent organization of: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core is parent organization of: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core is parent organization of: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core has organization facet: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core has organization facet: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core has organization facet: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core is organization facet of: Hematology Centers |
NIDDK U54DK110805 | Available to the research community | SCR_015348 | 2026-09-19 12:55:14 | 0 | |||||||||
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Columbia Diabetes Research Center Resource Report Resource Website |
Columbia Diabetes Research Center (RRID:SCR_015075) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center which provides research support for investigators pursuing research on diabetes and metabolic disorders. | metabolic disorders, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility has organization facet: Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility has organization facet: Columbia Diabetes Research Center Translational Biomarker Analytical Core Facility has organization facet: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility has organization facet: Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK063608 | Available to the research community | SCR_015075 | 2026-09-19 12:55:14 | 0 | ||||||||
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Cystic Fibrosis Center University of Pittsburgh Resource Report Resource Website 1+ mentions |
Cystic Fibrosis Center University of Pittsburgh (RRID:SCR_015400) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center whose goal is to understand and translate the basic mechanisms of cystic fibrosis. It uses the molecular and cell biology of CFTR, CFTR mutants, infection, and inflammation with the overall theme of translating preclinical science into clinical investigations. | cystic fibrosis mechanism, cystic fibrosis translational research, cystic fibrosis research |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pittsburgh; Pennsylvania; USA is organization facet of: Cystic Fibrosis Research and Translation Centers |
Cystic Fibrosis | NIDDK P30DK072506; Cystic Fibrosis Foundation Research Development Program R883-CR07 |
Available to the research community | SCR_015400 | 2026-09-19 12:55:14 | 1 | ||||||||
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Indiana Diabetes Research Center Resource Report Resource Website |
Indiana Diabetes Research Center (RRID:SCR_015080) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Center that includes over seventy investigators engaged in basic and translational research in diabetes and related metabolic disorders, and their complications. It contains four Research Cores that serve for innovative and translational research. | metabolic diseases, diabetes, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: Indiana Diabetes Research Center Swine Core is parent organization of: Indiana Diabetes Research Center Translation Core Facility is parent organization of: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility has organization facet: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility has organization facet: Indiana Diabetes Research Center Microscopy Core Facility has organization facet: Indiana Diabetes Research Center Swine Core has organization facet: Indiana Diabetes Research Center Translation Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | IUPUI Signature Center Initiative ; NIDDK P30DK097512 |
Available to the research community | SCR_015080 | 2026-09-19 12:55:14 | 0 | ||||||||
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Human Islet Research Network (HIRN) Resource Report Resource Website 100+ mentions |
Human Islet Research Network (HIRN) (RRID:SCR_014393) | HIRN | data or information resource, disease-related portal, portal, topical portal | Network helps to organize and support collaborative research related to loss of functional beta cell mass in Type 1 Diabetes (T1D). Project consists of four independent research initiatives: Consortium on Beta Cell Death and Survival (CBDS), Consortium on Human Islet Biomimetics (CHIB), Consortium on Modeling Autoimmune Interactions (CMAI), Consortium on Targeting and Regeneration (CTAR), and Human Pancreas Analysis Program (HPAP). | islet, human, consortia, functional loss, beta cell, research network, funding resource |
is used by: Hypothesis Center is listed by: NIDDK Information Network (dkNET) is related to: Pancreatlas is related to: scPancMeta App is related to: PANC-DB has organization facet: HIRN Consortium on Beta Cell Death and Survival has organization facet: HIRN Consortium on Human Islet Biomimetics has organization facet: HIRN Consortium on Modeling Autoimmune Interactions has organization facet: HIRN Consortium on Targeting and Regeneration has organization facet: HIRN Human Pancreas Analysis Program has organization facet: HIRN Bioinformatics Center has organization facet: HIRN Coordinating Center has organization facet: HIRN Human Pancreas Analysis Consortium |
Type 1 diabetes, Diabetes | NIDDK | SCR_014393 | Human Islet Research Network | 2026-09-19 12:55:14 | 247 | |||||||
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SCDE Resource Report Resource Website 10+ mentions |
SCDE (RRID:SCR_015952) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software package that implements a set of statistical methods for analyzing single-cell RNA-seq data, including differential expression analysis (Kharchenko et al.) and pathway and geneset overdispersion analysis (Fan et al.) | statistic, single, cell, rna, seq, rnaseq, differential, analysis, pathway, gene, geneset, dispersion, overdispersion, bayesian, expression, magnitude | Leukemia and Lymphoma Research UK ; Leukemia and Lymphoma Society ; NHLBI R01 HL097794; NIA K25 AG037596; NIDDK R01 DK050234 |
PMID:24836921 | Free, Available for download | SCR_015952 | 2026-09-19 12:55:15 | 32 | |||||||||
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Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) Resource Report Resource Website 50+ mentions |
Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) (RRID:SCR_003743) | AMP T2D, T2DKP | data or information resource, data repository, database, disease-related portal, portal, service resource, storage service resource, topical portal | Portal and database of DNA sequence, functional and epigenomic information, and clinical data from studies on type 2 diabetes and analytic tools to analyze these data. .Provides data and tools to promote understanding and treatment of type 2 diabetes and its complications. Used for identifying genetic biomarkers correlated to Type 2 diabetes and development of novel drugs for this disease. | type 2 diabetes, diabetes, knowledge, portal, database, repository, type II, diabetic, genetic, data, analysis, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: Consortia-pedia is listed by: NIDDK Information Network (dkNET) is related to: Accelerating Medicines Partnership - Alzheimers is related to: Accelerating Medicines Partnership - Alzheimers is related to: Accelerating Medicines Partnership Autoimmune Diseases of Rheumatoid Arthritis and Lupus is related to: Type 1 Diabetes Knowledge Portal is related to: Common Metabolic Diseases Knowledge Portal has parent organization: Foundation for the National Institutes of Health has parent organization: Accelerating Medicines Partnership |
Type 2 diabetes, Diabetes | Broad Institute ; Fundacion Carlos Slim ; NIDDK ; NIH ; University of Michigan |
Free, Freely available | SCR_014533, nlx_157976 | http://www.nih.gov/science/amp/type2diabetes.htm | SCR_003743 | , AMP Diabetes, AMP, T2D, AMP-T2D, Type 2 Diabetes Knowledge Portal, Accelerating Medicines Partnership Type 2 Diabetes, Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal, The AMP-T2D Knowledge Portal, AMP T2D, AMP Type 2 Diabetes | 2026-09-19 12:55:06 | 83 | ||||
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MOPED - Model Organism Protein Expression Database Resource Report Resource Website 1+ mentions |
MOPED - Model Organism Protein Expression Database (RRID:SCR_006065) | MOPED | analysis service resource, data analysis service, data or information resource, database, production service resource, resource, service resource | An expanding multi-omics resource that enables rapid browsing of gene and protein expression information from publicly available studies on humans and model organisms. MOPED also serves the greater research community by enabling users to visualize their own expression data, compare it with existing studies, and share it with others via private accounts. MOPED uniquely provides gene and protein level expression data, meta-analysis capabilities and quantitative data from standardized analysis utilizing SPIRE (Systematic Protein Investigative Research Environment). Data can be queried for specific genes and proteins; browsed based on organism, tissue, localization and condition; and sorted by false discovery rate and expression. MOPED links to various gene, protein, and pathway databases, including GeneCards, Entrez, UniProt, KEGG and Reactome. The current version of MOPED (MOPED 2.5) The current version of MOPED (MOPED 2.5, 2014) contains approximately 5 million total records including ~260 experiments and ~390 conditions. | protein expression, gene expression, model organism, gene, protein, pathway, proteomics, transcriptomics, data visualization, overlap plot, heatmap, dot plot, data sharing, protein localization, gene localization |
is related to: GeneCards is related to: UniProt is related to: KEGG is related to: Reactome |
Robert B McMillen Foundation ; NSF DBI0544757; NIGMS 5R01GM076680; NIDDK UO1DK072473; NIDDK 1U01DK089571 |
PMID:24350770 PMID:22139914 |
nlx_151470 | SCR_006065 | Multi-Omics Profiling Expression Database | 2026-09-19 12:55:08 | 2 | ||||||
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MediBeacon: Transdermal GFR Monitor Resource Report Resource Website 1+ mentions |
MediBeacon: Transdermal GFR Monitor (RRID:SCR_024533) | instrument resource | Transdermal Glomerular Filtration Rate monitor used to assess renal function in mouse and rat models of acute kidney injury and chronic kidney disease. | Transdermal, Glomerular Filtration Rate, monitor, assess renal function, mouse, rat, acute kidney injury, chronic kidney disease, | DOD PR161028; NIDDK R01DK112688; Vanderbilt Center for Kidney Disease |
PMID:30394397 | Restricted | SCR_024533 | 2026-09-19 12:55:45 | 1 |
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