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https://impute.afrigen-d.org/#!

Web portal provides interconnected resources and services for African genomics research data lifecycle management and implementation. African genotype imputation service using diverse African population reference panel. African genomics data hub.

Proper citation: Afrigen-D Imputation Server (RRID:SCR_026921) Copy   

•   Source: SciCrunch Registry

https://www.bruker.com/en/products-and-solutions/mass-spectrometry/timstof/timstof-flex.html

The timsTOF fleX is fully functional high speed, high sensitivity ElectroSpray Ionization (ESI) instrument for all Omics analyses with integrated Matrix-Assisted Laser Desorption Ionization (MALDI) source for fast MALDI Imaging.

Proper citation: Bruker: timsTOF fleX (RRID:SCR_026925) Copy   

•   Source: SciCrunch Registry

https://www.invivogen.com/

Biotechnology company in San Diego, California. Provides life scientists with innovative research reagents including immunity and cell culture products.

Proper citation: InvivoGen (RRID:SCR_026997) Copy   

•   Source: SciCrunch Registry

https://www.statsape.com

Web platform that integrates multiple programming language environments and enables data processing, data analysis, and machine learning through visual interface.

Proper citation: DecisionLinnc Data Science Platform (RRID:SCR_026971) Copy   

•   Source: SciCrunch Registry

https://www.bruker.com/en/products-and-solutions/mass-spectrometry/lc-ms/nanoelute-2.html

High-performance nanoflow liquid chromatography system with intuitive and flexible user interface, covering broad range of applications from single cell to high throughput routine proteomics.

Proper citation: Bruker: nanoElute 2 (RRID:SCR_026972) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/mediation/index.html

Software R package for estimation of causal mediation effects. Allows researchers to conduct sensitivity analysis for certain parametric models.

Proper citation: mediation (RRID:SCR_026984) Copy   

•   Source: SciCrunch Registry

https://www.berthold.com/en/bioanalytic/products/microplate-readers/luminescence/centro-lb963/

Instrument for luminescence applications.

Proper citation: Berthold: Centro LB 960 Microplate Luminometer (RRID:SCR_026977) Copy   

•   Source: SciCrunch Registry

https://www.gamma-medical.info/de/produkte/blutbestrahlung#c357

Fully protected Gamma irradiation device for blood irradiation in transfusion medicine and research.

Proper citation: Gamma Service Medical: Biobeam GM 8000 (RRID:SCR_026976) Copy   

•   Source: SciCrunch Registry

http://www.atgc-montpellier.fr/permutmatrix/

Software package for analysing and visualising data. Graphical environment to arrange gene expression profiles in optimal linear order.

Proper citation: PermutMatrix (RRID:SCR_026979) Copy   

•   Source: SciCrunch Registry

https://assets.thermofisher.com/TFS-Assets/CMD/Specification-Sheets/PS-64582-LC-EASY-nLC-1200-PS64582-EN.pdf

System provides peak performance for nanoflow applications up to 1200 bar. Dual in-line flow sensors before solvent mixing give excellent gradient precision. Its intuitive software facilitates rapid method setup and immediate system control.

Proper citation: Thermo Fisher: EASY-nLC 1200 System (RRID:SCR_026978) Copy   

•   Source: SciCrunch Registry

https://usa.united-imaging.com/products/molecular-imaging/upmr-790

United Imaging uPMR 790 enables simultaneous PET/MRI imaging with high temporal and spatial resolution. Represents major technological breakthrough in imaging field by combining time of flight (TOF) positron emission tomography (PET) and magnetic resonance imaging (MRI) in one scanner. This system allows simultaneous acquisition of MR and PET images in human subjects.

Proper citation: United Imaging: uPMR 790 Tesla scanner (RRID:SCR_027002) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/release/bioc/html/apeglm.html

Software package provides Bayesian shrinkage estimators for effect sizes for variety of GLM models, using approximation of posterior for individual coefficients.

Proper citation: apeglm (RRID:SCR_026951) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/order/catalog/product/BRE725533?SID=srch-hj-BRE725533

Orbitrap LC-MS with EASY-IC (Internal Calibration) mass spectrometer for high-resolution, accurate mass analysis of complex samples, providing detailed information about compounds for identification, quantification, and characterization. Liquid Chromatography-Mass Spectrometry combines the separation power of liquid chromatography with the mass analysis capabilities of mass spectrometer. Orbitrap mass analyzer offers high resolution and accuracy, enabling the separation and identification of even closely related compounds. Internal Calibration uses internally generated ions to improve mass accuracy.

Proper citation: Thermo Fisher: Orbitrap Exploris 480 Mass Spectrometer (RRID:SCR_027000) Copy   

•   Source: SciCrunch Registry

https://ubuntu.com/desktop/wsl

Ubuntu terminal environment on Windows with Windows Subsystem for Linux (WSL). Used to streamline web application development, leverage cutting-edge AI/ML tooling, develop cross-platform applications and manage IT infrastructure without leaving Windows.

Proper citation: Ubuntu on WSL (RRID:SCR_026948) Copy   

•   Source: SciCrunch Registry

https://github.com/PathoGenOmics-Lab/VIPERA

Software package to automate analysis of evolutionary trajectories over time of series of sequences from same viral infection. Snakemake workflow for SARS-CoV-2 viral intra-patient evolution reporting and analysis.

Proper citation: VIPERA (RRID:SCR_026964) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/light-microscopes/stereo-microscopes/p/leica-s6-d/

Stereo microscope with 6.3:1 zoom and integrated video/photo port allows easy, fast documentation for assembly, quality control, OEM and research applications. Adjustable zoom stops allows fast, easy, repeatable measurements and inspections.

Proper citation: Leica: S6 D Greenough stereo microscope (RRID:SCR_027044) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/microscope-cameras/p/leica-dfc3000-g/

Grayscale USB 3.0 microscope camera for routine fluorescence applications. You will receive crisp images due to its unique passive cooling architecture and its highly sensitive CCD sensor. Correlated pixel double sampling together with reduction of ambient temperature of the sensor offers exceptionally clear and noise-free signal. Its CCD sensor is particularly suitable for low light situations such as fluorescence and will capture even smallest amounts of light. Camera produces live images with up to 30 frames per second. The USB 3.0 interface provides for fast data transfer.

Proper citation: Leica: DFC3000 G CCD Microscope Camera (RRID:SCR_027043) Copy   

•   Source: SciCrunch Registry

https://www.microscope.healthcare.nikon.com/products/inverted-microscopes/eclipse-ts2r

Compact inverted research microscope configurable with wide variety of observation methods such as epi-fluorescence, phase contrast, DIC, and more. The Ts2R features camera port for digital imaging while maintaining compact body.

Proper citation: Nikon: ECLIPSE Ts2R inverted microscope (RRID:SCR_027146) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/CPE/index.html

Software R package used in survival analysis that evaluates predictive accuracy of survival model. Measures how well model can distinguish between pairs of individuals with different survival times. Calculates proportion of all pairs of individuals whose predicted survival times are correctly ordered.

Proper citation: Concordance Probability Estimates (RRID:SCR_027140) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/mvmeta/index.html

Software R package to perform fixed and random-effects multivariate and univariate meta-analysis and meta-regression.

Proper citation: mvmeta (RRID:SCR_027142) Copy   

•   Source: SciCrunch Registry