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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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S-Risk Resource Report Resource Website |
S-Risk (RRID:SCR_023085) | software resource, web application | Web tool for assessing exposure and human health risks at contaminated sites. Fate and distribution of chemical pollutants in soil are calculated according to steady-state conservation of mass principles.Risks are calculated by comparing exposures with toxicological reference values and concentrations with toxicological or legal reference concentrations. | Chemical pollutants in soil, assessing exposure and human health risks, comparing exposures with toxicological reference values, . | Restricted | SCR_023085 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | |||||||||||
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Animal Natural History and Life History Ontology Resource Report Resource Website 1+ mentions |
Animal Natural History and Life History Ontology (RRID:SCR_010292) | ADW | controlled vocabulary, data or information resource, ontology | An ontology for animal life history and natural history characteristics suitable for populations and higher taxonomic entities. | owl |
is listed by: BioPortal has parent organization: University of Michigan; Ann Arbor; USA |
nlx_157319 | SCR_010292 | SciCrunch Registry | 2026-10-24 12:49:25 | 1 | |||||||||
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Coding Symbols for a Thesaurus of Adverse Reaction Terms Resource Report Resource Website |
Coding Symbols for a Thesaurus of Adverse Reaction Terms (RRID:SCR_010294) | COSTART | controlled vocabulary, data or information resource, ontology | Ontology for coding, filing, and retrieving post-marketing adverse drug and biologic experience reports. It is organized in body system and pathophysiology hierarchies, as well as a separate fetal/neonatal category of less than 20 terms. COSTART has been superseded by the Medical Dictionary for Regulatory Activities (MedDRA) Terminology. For more information about MedDRA in the Metathesaurus, see the MedDRA source synopsis. COSTART was last updated in the Metathesaurus in 1999. | umls | is listed by: BioPortal | nlx_157367 | SCR_010294 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | |||||||||
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NCBITaxon Resource Report Resource Website 1+ mentions |
NCBITaxon (RRID:SCR_000479) | NCBITAXON | controlled vocabulary, data or information resource, ontology | Ontology that is an automatic translation of the NCBI taxonomy (a taxonomic classification of living organisms and associated artifacts) database into obo/owl. | owl |
is listed by: BioPortal has parent organization: NCBI Taxonomy |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157490 | SCR_000479 | SciCrunch Registry | National Center for Biotechnology Information Organismal Classification, National Center for Biotechnology Information (NCBI) Organismal Classification, NCBI Organismal Classification | 2026-10-24 12:49:25 | 4 | |||||||
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GLAD Resource Report Resource Website 100+ mentions |
GLAD (RRID:SCR_001284) | GLAD | software resource | Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified. | comparative genomic hybridization, breakpoint, copy number variation, microarray |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:15381628 | Free, Available for download, Freely available | OMICS_02053 | SCR_001284 | SciCrunch Registry | GLAD - Gain and Loss Analysis of DNA, Gain and Loss Analysis of DNA | 2026-10-24 12:49:25 | 292 | ||||||
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Differential Enrichment analysis of Proteomics data Resource Report Resource Website 1+ mentions |
Differential Enrichment analysis of Proteomics data (RRID:SCR_023090) | DEP | data analysis software, data processing software, software application, software resource | Software R package provides integrated analysis workflow for analysis of mass spectrometry proteomics data for differential protein expression or differential enrichment. | analysis of mass spectrometry proteomics data, differential protein expression, differential enrichment | PMID:29446774 | Free, Available for download, Freely available | SCR_023090 | SciCrunch Registry | Differential Enrichment analysis of Proteomics data | 2026-10-24 12:49:25 | 7 | ||||||||
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Habronattus Courtship Ontology Resource Report Resource Website |
Habronattus Courtship Ontology (RRID:SCR_010334) | HC | controlled vocabulary, data or information resource, ontology | An ontology for courtship behavior of the spider Habronattus californicus. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms. | protege | is listed by: BioPortal | nlx_157423 | http://www.mesquiteproject.org/ontology/Habronattus/index.html | SCR_010334 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | ||||||||
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Australian Ocean Data Network Resource Report Resource Website 10+ mentions |
Australian Ocean Data Network (RRID:SCR_023134) | data repository, service resource, storage service resource | Interoperable online network of marine and climate data resources.AODN Portal provides access to all available Australian marine and climate science data and provides the primary access to IMOS data. |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Free, Freely available | DOI:10.26198, r3d100011749, DOI:10.17616/R3CG82, r3d100010914, DOI:10.25504/FAIRsharing.j5eden | https://doi.org/10.26198, https://dx.doi.org/10.26198, http://doi.org/10.17616/R3CG82, https://fairsharing.org/10.25504/FAIRsharing.j5eden, https://doi.org/10.17616/R3CG82, https://doi.org/10.17616/R35057 | SCR_023134 | SciCrunch Registry | Australian Ocean Data Network | 2026-10-24 12:49:27 | 18 | ||||||||
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Astrobiology Habitable Environments Database Resource Report Resource Website 1+ mentions |
Astrobiology Habitable Environments Database (RRID:SCR_023133) | data repository, service resource, storage service resource | Astrobiology Habitable Environments Database (AHED) is a new data system being developed as a long-term, open-access repository for astrobiology data. AHED is intended to store user-contributed results from NASA or externally-funded research in astrobiology, and to encourage sharing and synergy within the astrobiology community. | is listed by: DataCite | Free, Freely available | DOI:10.48667 | https://doi.org/10.48667, https://dx.doi.org/10.48667 | SCR_023133 | SciCrunch Registry | Astrobiology Habitable Environments Database | 2026-10-24 12:49:27 | 1 | ||||||||
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Aston Data Explorer Resource Report Resource Website 100+ mentions |
Aston Data Explorer (RRID:SCR_023132) | data repository, service resource, storage service resource | Aston University's repository for their research data. It is one of three services providing information about Aston University�s research. Aston Publications Explorer holds Aston's research publications and Aston Research Explorer has broader information about Aston's research work including research staff, awards and activities, projects and research groups.Metadata will be accessible to anyone free of charge. The metadata may be re-used in any medium without prior permission and re-sold commercially provided the repository is mentioned.Aston�s repository holds datasets and corresponding metadata that have been produced by Aston University staff and students. The datasets deposited in Aston Publications Explorer range from metadata records only through to full datasets. Content is the sole responsibility of the authors, and any questions over content should be directed to them.Aston Data Explorer, Aston Publications Explorer AND Aston Research Explorer allow users to re-use full-text and other full-data items under the terms of the Creative Commons Attribution Non-Commercial No Derivatives (CC BY NC ND) licence. This means that users must give appropriate credit to the authors and link to the licence. Users may not re-use the material for commercial purposes. Users cannot distribute material that has been remixed, transformed or built upon the original published output. Where a full-text or other full-data item has a licence that is more restrictive or permissive than the CC BY NC ND default licence, this licence should be adhered to. |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | r3d100012285, DOI:10.17616/R3H073, DOI:10.17036 | https://doi.org/10.17036, https://dx.doi.org/10.17036, http://doi.org/10.17616/R3H073, https://doi.org/10.17616/R3H073 | SCR_023132 | SciCrunch Registry | Aston Data Explorer | 2026-10-24 12:49:27 | 146 | ||||||||
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Arch Resource Report Resource Website 1+ mentions |
Arch (RRID:SCR_023130) | data repository, service resource, storage service resource | Arch is an open access repository for the research and scholarly output of Northwestern University. Log in with your NetID to deposit, describe, and organize your research for public access and long-term preservation. We'll use our expertise to help you curate, share, and preserve your work. | Northwestern University research and scholarly output, Northwestern University data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Free, Freely available | DOI:10.17616/R31NJMGT, DOI:10.25504/FAIRsharing.52b22c, r3d100012925, DOI:10.21985 | https://doi.org/10.21985, https://dx.doi.org/10.21985, http://doi.org/10.17616/R31NJMGT, https://fairsharing.org/10.25504/FAIRsharing.52b22c, https://doi.org/10.17616/R31NJMGT | SCR_023130 | SciCrunch Registry | Arch | 2026-10-24 12:49:26 | 2 | |||||||
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Coordination of Standards in Metabolomics Resource Report Resource Website 10+ mentions |
Coordination of Standards in Metabolomics (RRID:SCR_014662) | COSMOS | data or information resource, narrative resource, standard specification | A group which aims to create open standards for metabolomics data shsaring and analysis. | metabolomics, standard, collaboration, small molecule, consortium | is listed by: Metabolomics Workbench | European Union COSMOS EC312941 | SCR_014662 | SciCrunch Registry | COordination of Standards in MetabOlomicS (COSMOS), COordination of Standards in MetabOlomicS | 2026-10-24 12:49:24 | 13 | ||||||||
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Family Health History Ontology Resource Report Resource Website |
Family Health History Ontology (RRID:SCR_010068) | FHHO | controlled vocabulary, data or information resource, ontology | Ontology that facilitates representing the family health histories of persons related by biological and/or social family relationships (e.g. step, adoptive) who share genetic, behavioral, and/or environmental risk factors for disease. SWRL rules are included to compute 3 generations of biological relationships based on parentage and family history findings based on personal health findings. | owl | is listed by: BioPortal | nlx_157402 | SCR_010068 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | |||||||||
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DANNCE Resource Report Resource Website 1+ mentions |
DANNCE (RRID:SCR_023061) | 3d visualization software, data processing software, data visualization software, software application, software resource | Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking. | OpenBehavior, track animals, pose information, 3D positions, video data, multiple cameras, 3D markerless pose estimation and tracking, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=DANNCE | SCR_023061 | SciCrunch Registry | 3-Dimensional Aligned Neural Network for Computational Ethology | 2026-10-24 12:49:24 | 2 | ||||||||
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Dispedia Core Ontology Resource Report Resource Website |
Dispedia Core Ontology (RRID:SCR_010309) | DCO | controlled vocabulary, data or information resource, ontology | Ontology that is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS). | owl | is listed by: BioPortal | Rare disease, Amyotrophic lateral sclerosis | nlx_157389 | SCR_010309 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | ||||||||
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Semantic Web for Earth and Environment Technology Ontology Resource Report Resource Website |
Semantic Web for Earth and Environment Technology Ontology (RRID:SCR_010426) | SWEET | controlled vocabulary, data or information resource, ontology | A mature foundational ontology developed at the NASA Jet Propulsion Laboratory, currently containing over 6000 concepts organized in 200 ontologies represented in OWL, whose top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research). SWEET is now officially under the governance of the ESIP foundation. | owl | is listed by: BioPortal | nlx_157585 | SCR_010426 | SciCrunch Registry | 2026-10-24 12:49:26 | 0 | |||||||||
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Systems Chemical Biology and Chemogenomics Ontology Resource Report Resource Website |
Systems Chemical Biology and Chemogenomics Ontology (RRID:SCR_003928) | CHEMBIO | controlled vocabulary, data or information resource, ontology | Ontology for Systems Chemical Biology and Chemogenomics | owl | is listed by: BioPortal | nlx_157605 | SCR_003928 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | |||||||||
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Drosophila Development Ontology Resource Report Resource Website |
Drosophila Development Ontology (RRID:SCR_010310) | FB-DV | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of the development of Drosophila melanogaster. | obo |
is used by: Virtual Fly Brain is listed by: BioPortal has parent organization: FlyBase |
nlx_157390 | SCR_010310 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | |||||||||
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Bycom Resource Report Resource Website |
Bycom (RRID:SCR_000659) | software resource | A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output. | methylcytosine, bs-seq, fastq, sam, bam, snps, snp, wgbs, rrbs, sorftw |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25255082 | Free, Available for download, Freely available | OMICS_00594 | SCR_000659 | SciCrunch Registry | 2026-10-24 12:49:25 | 0 | ||||||||
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StatTech Resource Report Resource Website 1+ mentions |
StatTech (RRID:SCR_023071) | data access protocol, software resource, web service | Web service for statistics with automated data analysis mode. | statistics, automated data analysis | Restricted | SCR_023071 | SciCrunch Registry | 2026-10-24 12:49:24 | 3 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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