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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Canadian Breast Cancer Foundation Tumor Bank Resource Report Resource Website 1+ mentions |
Canadian Breast Cancer Foundation Tumor Bank (RRID:SCR_004214) | CBCF TB | biomaterial supply resource, tissue bank, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 18, 2022. A tumor bank that provides a large collection of cancer specimens, from breast and other cancers, annotated with clinical information. The CBCF TB enables researchers to address unanswered questions concerning the prognosis and treatment of breast cancer and other cancers. The CBCF TB website is also directed to participants interested in donating tumor tissue or blood. Biological specimens such as blood, urine, bone marrow, and ascites (fluid that sometimes collects in the abdomen) contain genetic information, just as tumor tissue does. These samples can be used in studies that may help researchers see how people with certain genetic make-ups respond to certain treatments. It can also explain why different people have different health problems. CBCF TB, formerly ARTB, was created by a merger of components of two existing Tumor-banking initiatives, the CLS Repository in Calgary and the Tumor bank of the PolyomX Program in Edmonton. | clinical information, clinical |
is listed by: One Mind Biospecimen Bank Listing is related to: Canadian Tumour Repository Network has parent organization: Canadian Breast Cancer Foundation |
Breast cancer, Tumor, Cancer | Canadian Breast Cancer Foundation ; Alberta Cancer Foundation |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143637 | http://www.abtumorbank.com/ | SCR_004214 | Canadian Breast Cancer Foundation Alberta Research Tumor Bank, ARTB, CBCF Tumor Bank, Alberta Research Tumor Bank | 2026-08-15 11:28:30 | 3 | ||||
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British Columbia Gynaecologic Tissue Bank Resource Report Resource Website |
British Columbia Gynaecologic Tissue Bank (RRID:SCR_004171) | BC Gynaecologic Tissue Bank | biomaterial supply resource, tissue bank, material resource | The OvCaRe Tissue Bank is housed within the Vancouver General Hospital Department of Pathology and the British Columbia Cancer Agency. This bank contains tumour samples from over 1100 patients. The tissue samples in the bank are collected from consenting patients within 30 minutes of surgical excision and stored in a variety of forms, including snap frozen, formalin fixed, and as live cells. As of 2007, serum, plasma, and buffy coat are also being collected for every case within the tissue bank. In addition to providing research material for OvCaRe researchers, the OvCaRe Tumour Bank is more active than any other tumour bank in sending samples to research collaborators and has already contributed to 43 national and international research projects. This and other tissue banks provide the foundation for translational research in medicine. In order for these samples to be used by current technologies such as Illumina whole transcriptome sequencing, the samples must be of extremely high quality. We have currently sent a selection of our samples to The Cancer Genome Atlas Project for analysis and were told by researchers there that our samples were among the best quality that they had encountered around the world. Serum Bank The OvCaRe serum bank is located at the British Columbia Cancer Agency. This bank contains over 10,000 serum samples that have been submitted for CA-125 testing as well as samples collected from patients who have consented to have their tumours submitted to the OvCaRe Tumour Bank. Like the tumour bank, these resources are available to collaborating researchers. Ovarian Cancer Tissue Microarrays The ovarian cancer tissue microarray facility from all available early ovarian cancer cases in the province for the period 1984-2000 (541 samples) was created by Dr. Blake Gilks and is the largest tissue microarray of early ovarian cancer samples. This population based series was generated in the Genetic Pathology Evaluation Center (GPEC), a laboratory supported by a Michael Smith Foundation for Health Research Unit Grant and is being used by over 20 different local and international collaborative studies. Two other ovarian cancer tissue microarrays are also built and are available to interested collaborators. All samples in the tissue microarray are linked to clinical outcomes at the Cheryl Brown Ovarian Cancer Outcomes Unit. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: BC Cancer Agency |
nlx_19753 | http://ovcare.ca/research/platforms.php | SCR_004171 | Ovarian Cancer Research Tissue Bank, OvCaRe Tissue Bank, BC Gynecologic Tissue Bank | 2026-08-15 11:28:30 | 0 | ||||||||
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INMEX Resource Report Resource Website 10+ mentions |
INMEX (RRID:SCR_004173) | INMEX | analysis service resource, service resource, data analysis service, production service resource | A web-based tool to support meta-analysis of multiple gene-expression data sets, as well as to enable integration of data sets from gene expression and metabolomics experiments. INMEX contains three functional modules. The data preparation module supports flexible data processing, annotation and visualization of individual data sets. The statistical analysis module allows researchers to combine multiple data sets based on P-values, effect sizes, rank orders and other features. The significant genes can be examined in functional analysis module for enriched Gene Ontology terms or Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, or expression profile visualization. INMEX has built-in support for common gene/metabolite identifiers (IDs), as well as 45 popular microarray platforms for human, mouse and rat. Complex operations are performed through a user-friendly web interface in a step-by-step manner. | gene expression, meta-analysis, metabolomics, pathway, gene, metabolite, visualization, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology is related to: KEGG is related to: Human Metabolome Database has parent organization: University of British Columbia; British Columbia; Canada |
Killam Trust ; Canadian Institutes of Health Research |
PMID:23766290 | Acknowledgement requested | biotools:inmex, OMICS_01546 | https://bio.tools/inmex | SCR_004173 | INtegrative Meta-analysis of EXpression data, INMEX - INtegrative Meta-analysis of EXpression data | 2026-08-15 11:28:37 | 19 | ||||
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FlyTF.org Resource Report Resource Website 10+ mentions |
FlyTF.org (RRID:SCR_004123) | FlyTF | data or information resource, database | A database of genomic and protein data for Drosophila site-specific transcription factors. | transcription factor, gene, annotation, genome, protein |
is listed by: OMICtools has parent organization: MRC Laboratory of Molecular Biology |
PMID:16613907 | The community can contribute to this resource, Acknowledgement requested | OMICS_00534 | SCR_004123 | FlyTF.org - The Drosophila Transcription Factor Database | 2026-08-15 11:28:29 | 12 | ||||||
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Glyco3D Resource Report Resource Website 1+ mentions |
Glyco3D (RRID:SCR_003797) | Glyco3D | data or information resource, database | A family of databases covering the 3D features of monos, di, oligo, polysaccharides, glycosyltransferases, lectins, monoclonal antibodies and glycosaminoglycan-binding proteins. Other databases are also made available that completes the picture of glycan 3D structure decoding. that are made freely available to the scientific community. A search engine has been developed that scans the full content of all the data bases for queries related to sequential information of the carbohydrates or other related descriptors. This database ensemble offers a unique opportunity to characterize the 3D features that a given oligosaccharide can assume in different environments. | carbohydrate, monosaccharide, disaccharide, oligosaccharide, polysaccharide, glycosyltransferase, lectin, monoclonal antibody, glycosaminoglycan-binding protein | uses: Jmol | PMID:25753716 | nlx_158094 | SCR_003797 | 2026-08-15 11:28:29 | 7 | ||||||||
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OpenLink Software Resource Report Resource Website |
OpenLink Software (RRID:SCR_003662) | OpenLink | service resource, commercial organization, software resource | An technology innovator in database and application server software that has been a long time developer of database and semantic repository technologies on both single servers and clusters. This, combined with OpenLink's experience with SQL, gives an all round view of performance across many environments and workload profiles, from transactions to decision support or search. OpenLink also has extensive experience in developing scale-out parallel database technology. The cross-platform product portfolio addresses challenges such as: Universal Data Access, Data Virtualization & Management, Personal & Enterprise Data Spaces, and Implementation & Support. | standards compliant, data access, integration, management, technology, linked data |
is related to: Open PHACTS is parent organization of: DBpedia |
nlx_157816 | SCR_003662 | OpenLink Group Limited | 2026-08-15 11:28:29 | 0 | ||||||||
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DCI Tissue and Blood Procurement Shared Resource Resource Report Resource Website |
DCI Tissue and Blood Procurement Shared Resource (RRID:SCR_004116) | DCI Tissue Bank | biomaterial supply resource, tissue bank, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 16, 2013. Over 10,000 patient consents, 5,000 banking events, and 40,000 biospecimens have been processed to date with storage of both formalin fixed paraffin embedded (FFPE) tissue and frozen tissue located within multiple freezers spanning temperatures in the range of -80 degrees to -180 degrees C depending on protocol requirements. Considerable effort continues to be expended to assure compliance with IRB, NIH and HIPAA best practices and guidelines on banking human tissues. The biorepository in place today is the result of the combined efforts of the Duke Cancer Institute (DCI) Breast SPORE, DCI Shared Resource for Tissue and Blood Procurement, and the Duke University School of Medicine Research Foundation (DUSOM-RF). The DCI and the School of Medicine Research Foundation (SOMRF) have funded the collection of frozen and fixed tissues, both malignant and benign, under an ?????????????????excess tissue????????????????? protocol that utilizes freshly excised tissue that is available for research after the needs of the pathologic workup are met. This program procures tissues from many anatomic sites including breast. Recently Duke''s Institute of Genome Science & Policy (IGSP), under the direction of Drs. Geoff Ginsburg and Tom Burke, initiated a blood collection program that spans several departments and institutes. The Breast SPORE blood collection program served as the pilot for this much larger effort. The Breast SPORE tissue and blood collection effort utilizes much of the same infrastructure and personnel that are also supported by the DCI, SOMRF, and IGSP. | blood, tissue, cancer, biospecimen, formalin fixed paraffin embedded tissue, frozen tissue, malignant, benign, breast tissue, breast cancer, tumor, frozen, paraffin, malignant tissue, benign tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Duke Cancer Institute |
Cancer, Breast cancer, Malignant tumor, Benign tumor | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_19619 | http://www.cancer.duke.edu/modules/SPORE50/index.php?id=5 | SCR_004116 | Duke Cancer Institute Tissue and Blood Procurement Shared Resource, DCI Tissue Bank, Duke Cancer Institute Tissue Bank, DCI Tissue Blood Procurement Shared Resource, Duke Cancer Institute Tissue Blood Procurement Shared Resource | 2026-08-15 11:28:37 | 0 | |||||
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Canadian Tumour Repository Network Resource Report Resource Website 1+ mentions |
Canadian Tumour Repository Network (RRID:SCR_004192) | CTRNet | biomaterial supply resource, tissue bank, material resource | The Canadian Tumour Repository Network (CTRNet) is a not-for-profit consortium of leading provincial tumor banks and programs that furthers Canadian health research. CTRNet provides interested researchers with a streamlined process to obtain quality human tissue and human tissue products from member tumor banks. The benefits of working with CTRNet.ca include: * The ability for researchers to search for quality controlled tissue samples from Canada''''s leading tumor banks in one central location and for biobanks to display and make their biospecimens available for research users. * Learning opportunities in tissue handling, research design and relevant technology training and innovations. * Invitation to CTRNet workshops and conferences. * A resource for current news links and discussion forums about cancer research and tumor banking. The vision of CTRNet is to create new opportunities for translational cancer research that will improve cancer outcomes in Canada and beyond. Through the creation and maintenance of an online pan-Canadian network, researchers will gain unprecedented access to a new and comprehensive source of tissue and clinical data. The network is a sustainable resource and operates according to the highest scientific and ethical standards for research to benefit all Canadians. Currently CTRNet has the following member banks: * CBCF Tumor Bank Alberta * Manitoba Tumour Bank * Ontario Tumour Bank * British Columbia Cancer Agency Tumour Tissue Repository (BCCA-TTR) * Le r��seau de recherche en cancer du FRSQ * NCIC Clinical Trials Group |
is listed by: One Mind Biospecimen Bank Listing is related to: British Columbia Tumour Tissue Repository is related to: Ontario Tumour Bank is related to: Cancer Research Network of the FRSQ is related to: Manitoba Breast Tumor Bank is related to: Canadian Breast Cancer Foundation Tumor Bank |
Tumor | Canadian Institutes of Health Research | nlx_21725 | SCR_004192 | CTRNet.ca, Canadian Tumor Repository Network | 2026-08-15 11:28:30 | 3 | |||||||
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Integrated Brain Gene Expression Resource Report Resource Website |
Integrated Brain Gene Expression (RRID:SCR_004197) | data or information resource, database | Virtual database indexing brain region gene expression data from mice from: Gene Expression Nervous System Atlas (GENSAT), Allen Mouse Brain Atlas, and Mouse Genome Institute (MGI). | database, brain gene expression, molecular neuroanatomy resource, brain, gene expression, mouse, gene |
is used by: NIF Data Federation is related to: Gene Expression Nervous System Atlas is related to: Allen Mouse Brain Reference Atlas is related to: Mouse Genome Informatics (MGI) is related to: Allen Institute for Brain Science has parent organization: Integrated |
Restricted | nlx_22354 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-4 http://neuinfo.org/nif/nifgwt.html?query=nlx_22354, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_22354-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-4 | SCR_004197 | NIF Integrated Brain Gene Expression View, NIF Integrated Brain Gene Expression, Integrated BGE, Integrated Brain Gene Expression View, NIF Brain Gene Expression, Brain Gene Expression | 2026-08-15 11:28:37 | 0 | |||||||
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Progeria Cell and Tissue Bank Resource Report Resource Website 1+ mentions |
Progeria Cell and Tissue Bank (RRID:SCR_004194) | PRF Cell and Tissue Bank | biomaterial supply resource, tissue bank, material resource | The PRF Cell & Tissue Bank provides medical researchers with genetic and biological material from Progeria patients and their families, so that research on Progeria and other age-related diseases can be performed. We''ve been hard at work with the families and their physicians to gather these precious biological materials. As you know, Hutchinson-Gilford Progeria Syndrome is an extremely rare condition. Thus while access to cell lines is essential for studying the biology and genetics of the disorder, there are very few cell lines in existence. Because an integral part of PRF''s mission is to stimulate interest in, and NIH funding opportunities for, Progeria research, there is an increased need for cell lines. The PRF Cell Bank will ensure that need is met! The goals of The PRF Cell & Tissue Bank are to promote: * Sufficient availability of cells for approved research projects * Incentive for new research projects * Study of the biochemical basis for Hutchinson-Gilford Progeria Syndrome * Discoveries leading to new treatments for children with Progeria * Discovery of a cure for Progeria |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Progeria Research Foundation |
Progeria | nlx_22169 | SCR_004194 | PRF Cell Tissue Bank, Progeria Cell Tissue Bank, Progeria Research Foundation Cell Tissue Bank, Progeria Research Foundation Cell and Tissue Bank, PRF Cell & Tissue Bank | 2026-08-15 11:28:35 | 2 | ||||||||
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Nephromine Resource Report Resource Website 10+ mentions |
Nephromine (RRID:SCR_003813) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE; REPLACED BY NEPHROSEQ; A growing database of publicly available renal gene expression profiles, a sophisticated analysis engine, and a powerful web application designed for data mining and visualization of gene expression. It provides unique access to datasets from the Personalized Molecular Nephrology Research Laboratory incorporating clinical data which is often difficult to collect from public sources and mouse data. | kidney, gene expression, visualization, clinical, expression profile, gene, mouse model, microarray |
is listed by: NIDDK Information Network (dkNET) is related to: Nephroseq has parent organization: University of Michigan; Ann Arbor; USA has parent organization: Life Technologies |
Kidney disease, Healthy, Lupus nephritis, Chronic kidney disease, Diabetic nephropathy | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158114 | SCR_003813 | 2026-08-15 11:28:34 | 20 | ||||||||
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Gnubila Resource Report Resource Website |
Gnubila (RRID:SCR_004109) | Gnubila | service resource, commercial organization, software resource | A commercial software and service company operating in Spain, France and Colombia whose main stakeholder is Indra and its main product is the G platform, on top of which they have developed several vertical applications for various industry sectors like banking, healthcare, government and SMB. Since its constitution, gn??bila has constituted an international reference in the development and deployment of Network Service Infrastructures and Platforms for Businesses, Organizations and Individuals, facilitating communication, collaboration and the coordination of applications, data and information. gn??bila Products: * Cloud Application Platform * Cloud TP Platform * Platform as a Service * Development Platform | cloud computing, gaming platform as a service, application platform as a service, application services, middleware, grid infrastructure | is related to: EMIF | nlx_158585 | SCR_004109 | Gn??bila, Gnubila Technology | 2026-08-15 11:28:34 | 0 | ||||||||
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LIPID MAPS Structure Database Resource Report Resource Website 10+ mentions |
LIPID MAPS Structure Database (RRID:SCR_003817) | LMSD | data or information resource, database | Collection of structures and annotations of biologically relevant lipids that contains unique lipid structures. Structures of lipids from : LIPID MAPS Consortium's core laboratories and partners; lipids identified by LIPID MAPS experiments; biologically relevant lipids manually curated from LIPID BANK, LIPIDAT, Lipid Library, Cyberlipids, ChEBI and other public sources; novel lipids submitted to peer-reviewed journals; and computationally generated structures for appropriate classes. All the lipid structures adhere to the structure drawing rules proposed by the LIPID MAPS consortium. A number of structure viewing options are offered: gif image (default), Chemdraw (requires Chemdraw ActiveX/Plugin), MarvinView (Java applet) and JMol (Java applet). All lipids have been classified using the LIPID MAPS Lipid Classification System. Each lipid structure has been assigned a LIPID MAPS ID (LM_ID) which reflects its position in the classification hierarchy. In addition to a classification-based retrieval of lipids, users can search using either text-based or structure-based search options. | fatty acyl, glycerolipid, glycerophospholipid, sphingolipid, sterol lipid, prenol lipid, sacccharolipid, polyketide, lipid, structure, image, annotation, metabolomics | has parent organization: LIPID Metabolites And Pathways Strategy | NIGMS | PMID:17098933 | Public, Free, Acknowledgement required, Non-commercial, Copyrighted | nlx_158117 | SCR_003817 | LIPID MAPS Structure Database (LMSD) | 2026-08-15 11:28:29 | 24 | |||||
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LINCS Information Framework Resource Report Resource Website 1+ mentions |
LINCS Information Framework (RRID:SCR_003937) | data or information resource, database | LIFE search engine contains data generated from LINCS Pilot Phase, to integrate LINCS content leveraging semantic knowledge model and common LINCS metadata standards. LIFE makes LINCS content discoverable and includes aggregate results linked to Harvard Medical School and Broad Institute and other LINCS centers, who provide more information including experimental conditions and raw data. Please visit LINCS Data Portal. | bioassay, cell, small molecule, kinase protein, compound, cell, gene, metadata standard, cell line, primary cell, rnai reagent, rnai, reagent, protein reagent, protein, antibody reagent, antibody, perturbagen, growth factor, ligand, linked data, organ, disease, data set |
uses: HMS LINCS Database uses: Bioassay Ontology uses: Molecular Libraries Program is related to: Broad Institute is related to: Harvard Medical School; Massachusetts; USA is related to: Columbia University; New York; USA is related to: Yale University; Connecticut; USA is related to: Arizona State University; Arizona; USA has parent organization: University of Miami; Florida; USA |
NHLBI U01 HL111561; NHGRI |
PMID:29140462 | Free, Freely available | nlx_158348 | http://dev3.ccs.miami.edu:8080/datasets-beta/ | http://lifekb.org/ | SCR_003937 | lifekb, LIFE LINCS Information Framework | 2026-08-15 11:28:36 | 1 | ||||
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BioStorage Technologies Resource Report Resource Website |
BioStorage Technologies (RRID:SCR_004302) | BioStorage Technologies | biomaterial supply resource, tissue bank, material resource | At BioStorage Technologies, our mission is to provide our clients with world class, biorepository services, exceeding clients����?? expectations of service, value and quality while setting the industry standard for the storage, management & logistics of samples. Offering onsite or outsourced management of sample assets, BioStorage Technologies manages the complete life-cycle of samples. With a team of global sample experts, state-of-the-art temperature-controlled storage facilities, and a real-time web-based sample intelligence and tracking system, the company supports customers in maximizing opportunities, minimizing risk and reducing the cost of sample management. The unique advantages of BioStorage Technologies * Consulting����??Expert consulting on Good Storage Practices, global transport standards, standard operating procedures and business continuity planning to mitigate risk and optimize your resources * Consolidation����??Comprehensive management of the sample lifecycle through consolidation of sample data into one technology system for faster retrieval, more flexible tracking and enhanced security * Control����??Enhanced control of sample asset data within one technology system, ISISS, for faster go/no-go decisions and expansion into future research * Compliance����??Improved chain of custody of your samples and easier audit trail tracking for adherence to quality and regulatory compliance standards in order to support product approvals * Cost-Reduction����??Reduced cost of sample management and increased project ROI through more efficient sample and data management processes, enabling you to refocus resources on your core competencies BioStorage Technologies, Inc. was founded in 2002 and is privately held and headquartered in North America in Indianapolis, Indiana with an additional full-service site in Europe near Frankfurt, Germany. | is listed by: One Mind Biospecimen Bank Listing | nlx_31526 | SCR_004302 | BioStorage Technologies Inc. | 2026-08-15 11:28:31 | 0 | |||||||||
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Duke Biobank Resource Report Resource Website |
Duke Biobank (RRID:SCR_004304) | Duke Biobank | biomaterial supply resource, tissue bank, material resource | The Duke Biobank is an institutional resource that combines well-annotated clinical data with a standardized, regulation compliant, cost efficient repository for both fluid and tissue, connected via information systems to a large scale, long-term biobank in Kannapolis, in order to foster breakthroughs in research; while ensuring the strictest adherence to ethical standards and regulations. Our goal is to work with investigators to maintain biorepository collections which are in compliance with all relevant local, regional and national and IRB biobanking standards. Capabilities * Provide expert consultation in planning and design of biobanking programs * Access, process, aliquot, store and distribute a wide array of liquid and tissue biological samples * Maintain informatics capabilities to accurately and efficiently track samples and link to clinical and laboratory assay data * Use the Duke Biobanking Guidelines document (in development) as guidance on scientific, ethical/legal, and operational to ensure quality and standardization of biospecimen collection * Minimize redundancy of infrastructure, as appropriate, across Duke Medicine. Duke University offers both on- and off-campus options for investigators seeking biobanking services. Our biobanking facilities are: * The Center for Human Genetics (CHG). Serves as the primary on-campus biobank for liquid sample storage for Duke Medicine, and as a portal between Duke and the LabCorp Biobank. * Duke Hospital South Tissue Bank. Serves as a sample portal for the Duke Biobank, and as the primary facility for tissue storage for Duke Medicine. ** DCCC Tissue & Blood Procurement ** IGSP Biospecimen Repository * LabCorp Biorepository. Located in Kannapolis, NC, this is the preferred storage center for large-scale, infrequently accessed sample collections | clinical data, fluid, tissue, blood, liquid |
is listed by: One Mind Biospecimen Bank Listing is listed by: Duke Human Heart Repository is related to: Biospecimen Repository and Processing Core has parent organization: Duke University; North Carolina; USA |
nlx_31838 | SCR_004304 | Duke Translational Research Institute Biobanking, DTRI Biobanking | 2026-08-15 11:28:38 | 0 | ||||||||
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BIND Resource Report Resource Website 100+ mentions |
BIND (RRID:SCR_003576) | BIND | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. Designed to capture protein function, defined at molecular level as set of other molecules with which protein interacts or reacts along with molecular outcome. Archives biomolecular interaction, complex and pathway information. A web-based system is available to query, view and submit records. BIND continues to grow with the addition of individual submissions as well as interaction data from the PDB and a number of large-scale interaction and complex mapping experiments using yeast two hybrid, mass spectrometry, genetic interactions and phage display. | interaction, protein, protein-protein interaction, small molecule-protein, nucleic acid-protein, small molecule, nucleic acid |
is related to: Interaction Reference Index is related to: ConsensusPathDB is related to: Christopher Hogues Research Lab at the National University of Singapore is related to: MPIDB is related to: PSICQUIC Registry is related to: Agile Protein Interactomes DataServer works with: IMEx - The International Molecular Exchange Consortium |
PMID:12519993 | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_11393 | http://bind.ca/ | SCR_003576 | Biomolecular Interaction Network Database | 2026-08-15 11:28:36 | 181 | |||||
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Multiple Myeloma Genomics Portal Resource Report Resource Website 1+ mentions |
Multiple Myeloma Genomics Portal (RRID:SCR_003722) | MMGP | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. Database providing access and limited analysis to the MMGP portal data sets. These include the MMRC funded reference array comparative genomic hybridization (aCGH) and gene expression data and additional public multiple myeloma datasets. The MMGP will be updated with new features such as additional data and analysis tools as they become available. | gene, genomics, mutation, single-nucleotide polymorphism, array comparative genomic hybridization, gene expression, resequencing, rnai, sample annotation, differential expression |
is used by: MMRF CoMMpass Study has parent organization: Broad Institute |
Multiple myeloma | Multiple Myeloma Research Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157900 | SCR_003722 | MMRC Multiple Myeloma Genomics Portal | 2026-08-15 11:28:36 | 3 | |||||
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UC San Diego Biorepository Resource Report Resource Website |
UC San Diego Biorepository (RRID:SCR_004256) | UC San Diego Biorepository | biomaterial supply resource, tissue bank, material resource | The Biorepository contains plasma, serum, RNA stabilized buffy coat, urine, viable tumor samples, and formalin-fixed paraffin-embedded tumor; all with associated clinical information. These can be provided to investigators with Cancer Sample Banking Committee approval (IRB approval is also required for projects requesting ongoing sample collection or clinical annotation.) Urine and blood-derived specimens are available from a wide variety of cancer cases and cancer-free controls. Tumor sample availability is more limited and predominately from breast and gastrointestinal malignancies. Samples are collected from consented subjects and de-identified clinical information on the subjects is collected over time. Subjects are consented for research germ line genotyping. Access to the clinical annotation is determined based on need as justified in each investigator''s request or protocol. Anonymized samples from the biorepository are available compliant with UCSD HRPP exempt category 4. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of California at San Diego; California; USA |
nlx_26921 | http://ctri.ucsd.edu/laboratory/Pages/Biorepositories.aspx | http://cancer.ucsd.edu/research-training/shared-resources/Pages/biorepository.aspx | SCR_004256 | UC San Diego Moores Cancer Center Biorepository, University of California San Diego Moores Cancer Center Biorepository, UCSD Biorepository, UCSD Moores Cancer Center Biorepository | 2026-08-15 11:28:35 | 0 | |||||||
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3DSwap Resource Report Resource Website 1+ mentions |
3DSwap (RRID:SCR_004133) | data or information resource, database | Curated knowledegbase of protein structures that are reported to be involved in 3-dimensional domain swapping. 3DSwap provides literature curated information and structure related information about 3D domain swapping in proteins. Information about swapping, hinge region, swapped region, extent of swapping, etc. are extracted from original research publications after extensive literature curation. | protein structure, protein, structure, 3d domain swapping, function, sequence, domain swap, 3d spatial image | has parent organization: Tata Institute of Fundamental Research; Mumbai; India | Tata Institute of Fundamental Research; Mumbai; India ; National Centre for Biological Sciences ; Wellcome Trust |
PMID:21959866 PMID:21592079 |
nlx_143564 | SCR_004133 | 3DSwap: Knowledgebase of 3D Domain Swapping in Proteins, 3DSwap - Knowledgebase of proteins involved in 3D domain swapping, 3D Swap, 3DSwap Database | 2026-08-15 11:28:30 | 5 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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