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http://www.biomexsolutions.co.uk/morda

Software package for molecular replacement protein structure solution using X-ray data. Includes database and set of programs for structure solution. Automatic molecular replacement pipeline.

Proper citation: MoRDa (RRID:SCR_017278) Copy   

•   Source: SciCrunch Registry

https://www.uke.de/index.html

Teaching hospital of University of Hamburg located in Eppendorf, Hamburg, Germany.

Proper citation: University Medical Center Hamburg-Eppendorf (RRID:SCR_017156) Copy   

•   Source: SciCrunch Registry

http://clustalw.ddbj.nig.ac.jp/index.php

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.Web sevice of ClustalW provided by DNA data bank of Japan.

Proper citation: ClustalW (RRID:SCR_017277) Copy   

•   Source: SciCrunch Registry

http://www.brainimagelibrary.org

Public, NIH-funded repository and analysis ecosystem for brain microscopy data, designed to store, share, and process massive volumetric datasets. It enables researchers to access whole-brain images, neuron morphologies, and spatial data without needing to download, fostering collaborative discovery. Used to deposit, analyze, mine, share and interact with large brain image datasets.

Proper citation: Brain Image Library (RRID:SCR_017272) Copy   

•   Source: SciCrunch Registry

http://barc.wi.mit.edu

Core provides consultation, training, software and educational tools in bioinformatics and graphics.

Proper citation: Whitehead Institute Bioinformatics and Research Computing Core Facility (RRID:SCR_017150) Copy   

•   Source: SciCrunch Registry

https://ous-research.no/bioinformatics/

Core facility provides high throughput sequencing data analysis, metagenomics data analysis, proteomics data analysis, protein structure analysis, functional genomics, programming, scripting, and database or web services.

Proper citation: Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility (RRID:SCR_017152) Copy   

•   Source: SciCrunch Registry

https://bossdb.org/

BossDB (Brain Observatory Storage Service and Database) is a cloud-based ecosystem for the storage and management of public large-scale volumetric neuroimaging and connectomics datasets. This includes volumetric Electron Microscopy and X-Ray Micro/Nanotomography data with support for multi-channel image data, segmentations, annotations, meshes, and connectomes. BossDB integrates with community resources for data access, processing, visualization, and analysis, and includes an API that enables metadata management, rendering, datatype conversions, and ingest.

Proper citation: Brain Observatory Storage Service and Database (BossDB) (RRID:SCR_017273) Copy   

•   Source: SciCrunch Registry

https://www.spindustries.com/

Commercial organization located in Warminster, Pennsylvania, USA is manufacturer of specialty equipment, scientific glassware, laboratory and lab safety supplies, and home healthcare products serving pharmaceutical, biotechnology, educational, industrial, OEM, and commercial markets under market leading brand names. Products include pharmaceutical, scientific research, industrial, aeronautic, semiconductor and healthcare. Flagship brands are SP Scientific, SP Scienceware, and SP Ableware.

Proper citation: SP Industries (RRID:SCR_017368) Copy   

•   Source: SciCrunch Registry

https://github.com/BDI-pathogens/phyloscanner

Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity.

Proper citation: phyloscanner (RRID:SCR_017400) Copy   

•   Source: SciCrunch Registry

https://www.oxinst.com/

Commercial organization located in Abingdon, United Kingdom for high technology products. Manufactures instruments for agriculture, astronomy, automotive, aerospace, bio-imaging, life science, chemical and catalysis, energy generation and storage, forensics, environmental industries, geology, metallurgy, pharmacy, photonics, polymers, quantum technology, data storage, and microelectronics. Products are divided into atom force microscopy, electron microscopy, deposition and etch tools, low temperature systems, optical imaging, nuclear magnetic resonance, MRI and CT servicing, Modular optical spectroscopy, and X-Ray.

Proper citation: Oxford Instruments (RRID:SCR_017366) Copy   

•   Source: SciCrunch Registry

https://github.com/raamana/neuropredict

Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers.

Proper citation: neuropredict (RRID:SCR_017405) Copy   

•   Source: SciCrunch Registry

https://github.com/SciCrunch/NIF-Ontology/tree/neurons/ttl

An ontology for describing the complex phenotypes of neurons.

Proper citation: Neuron Phenotype Ontology (RRID:SCR_017403) Copy   

•   Source: SciCrunch Registry

https://inscopix.com/nvista-system/

Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc. Allows to record real-time brain cell activity and calcium signaling in deep brain regions while the animal moves freely.

Proper citation: Bruker: INSCOPIX nVista (RRID:SCR_017407) Copy   

•   Source: SciCrunch Registry

https://github.com/raamana/graynet

Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications.

Proper citation: graynet (RRID:SCR_017406) Copy   

•   Source: SciCrunch Registry

https://www.liebertpub.com/doi/pdf/10.1089/15279160150518540

Software package for statistical analysis by SAS Institute Inc, Cary, NC.

Proper citation: StatView Version 5.0 (RRID:SCR_017411) Copy   

•   Source: SciCrunch Registry

https://medicine.ecu.edu/core-imaging/wp-content/pv-uploads/sites/288/2019/10/lsm-700-quick-guide.pdf

Laser scanning confocal microscope designed for high-quality imaging of biological and material samples. Member of the seventh generation of confocal microscopes from Carl Zeiss. Point scanning confocal microscope., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Zeiss: LSM 700 microscope (RRID:SCR_017377) Copy   

•   Source: SciCrunch Registry

https://usegalaxy.eu

Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging.

Proper citation: Mass spectrometry imaging workbench (RRID:SCR_017410) Copy   

•   Source: SciCrunch Registry

https://www.avingtrans.plc.uk/

Machine industry company located in Chatteris, Cambridgeshire, United Kingdom and engaged in provision of highly engineered components, systems and services to energy, medical and traffic. Has investment in Energy Divisions, Medical Division, and Aerospace Industries.

Proper citation: Avingtrans PLC (RRID:SCR_017371) Copy   

•   Source: SciCrunch Registry

http://www.agilemwt.com/index.htm

Manufacturer, located in Cary, North Carolina, USA, of amplifiers, RF/microwaves, and other electrical components which come in boards, modules, or systems.

Proper citation: Agile Microwave Technology Inc. (RRID:SCR_017373) Copy   

•   Source: SciCrunch Registry

https://www.mbfbioscience.com/neuroinfo

Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies.

Proper citation: NeuroInfo (RRID:SCR_017346) Copy   

•   Source: SciCrunch Registry