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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Hierarchical Clustering Resource Report Resource Website 1+ mentions |
Hierarchical Clustering (RRID:SCR_014673) | data analysis software, data processing software, software application, software resource, source code | R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method. | statistical analysis, statistical analysis package, r, r package, data analysis, software, cluster, hierarchical, dissimilarity, clustering method, metabolomics | is listed by: Metabolomics Workbench | Acknowledgement requested | SCR_014673 | SciCrunch Registry | R: Hierarchical Clustering, R - Hierarchical Clustering | 2026-10-17 01:29:05 | 4 | |||||||||
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Zeitzeiger Resource Report Resource Website 10+ mentions |
Zeitzeiger (RRID:SCR_014791) | data acquisition software, data processing software, software application, software resource | R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed. | r, data acquisition software, rhythm, behavior, predict, oscillatory system, high dimensional data, regularized supervised learning | Available for download | SCR_014791 | SciCrunch Registry | ZeitZeiger | 2026-10-17 01:28:56 | 13 | ||||||||||
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Principal Components Analysis Resource Report Resource Website 10+ mentions |
Principal Components Analysis (RRID:SCR_014676) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp. | statistical analysis, statistical analysis package, r, r package, principal component analysis, data matrix, prcomp, metabolomics | is listed by: Metabolomics Workbench | SCR_014676 | SciCrunch Registry | 2026-10-17 01:28:55 | 17 | |||||||||||
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La Jolla Institute for Immunology Bioinformatics Core Facility Resource Report Resource Website |
La Jolla Institute for Immunology Bioinformatics Core Facility (RRID:SCR_014831) | access service resource, core facility, service resource | Core Facility provides support for short or long-term projects requiring expertise the analysis of biological datasets. The services provided include the analysis of large-scale datasets (e.g. next-gen sequencing data, microarrays, etc.), the development of customized databases and reusable analysis pipelines, guidance on experimental design, support with technical sections of manuscripts and grants, and training on analysis software packages. All services are charged at our hourly rate. | immunology, core facility, la jolla, bioinformatics, core facility, data analysis, pipeline development, technical, statistical, review, training | has parent organization: La Jolla Institute for Immunology | Available to external user | http://livesite.liai.org/pages/core_bioinformatics | SCR_014831 | SciCrunch Registry | , Institute for Immunology, La Jolla Institute; La Jolla Institute for Allergy and Immunology Bioinformatics Core;La Jolla Institute for Allergy and Immunology Bioinformatics Core Facility | 2026-10-17 01:29:06 | 0 | ||||||||
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Linear Discriminant Analysis Resource Report Resource Website |
Linear Discriminant Analysis (RRID:SCR_014675) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular. | statistical analysis, statistical analysis package, r, r package, linear disciminant analysis, covariance, matrix, linear discriminant analysis, data analysis software, metabolomics | is listed by: Metabolomics Workbench | SCR_014675 | SciCrunch Registry | 2026-10-17 01:28:49 | 0 | |||||||||||
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Xperiment Resource Report Resource Website 1+ mentions |
Xperiment (RRID:SCR_014712) | data acquisition software, data analysis software, data processing software, mobile application, software application, software resource | Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales. | mobile, application, portable, behavioral science, online, social science | Free for the academic community, Fee for commercial organization | SCR_014712 | SciCrunch Registry | 2026-10-17 01:28:47 | 3 | |||||||||||
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Association of the Scientific Medical Societies in Germany Resource Report Resource Website |
Association of the Scientific Medical Societies in Germany (RRID:SCR_014716) | AWMF | group | An association of various medical entities in Germany. The organization advises on matters and tasks of fundamental and interdisciplinary interest in medicine, develops recommendations and resolutions and represents them at the institutions occupied with such tasks, such as research strategies, education, and postgraduate training. | germany, medicine, interdisciplinary, research | SCR_014716 | SciCrunch Registry | Arbeitsgemeinschaft der Wissenschaftlichen Medizinischen Fachgesellschaften | 2026-10-17 01:28:49 | 0 | ||||||||||
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DeviumWeb Resource Report Resource Website 10+ mentions |
DeviumWeb (RRID:SCR_014683) | data analysis software, data processing software, data visualization software, software application, software resource, software toolkit | A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis. | metabolomics, metabolomics tool, data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis, visualization, principal component analysis, predictive modeling, biochemical pathway analysis | is listed by: Metabolomics Workbench | Subscription required, 30-day demo available | http://dgrapov.github.io/DeviumWeb/ | SCR_014683 | SciCrunch Registry | 2026-10-17 01:28:47 | 12 | |||||||||
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Salk Institute Behavior Testing Core Facility Resource Report Resource Website |
Salk Institute Behavior Testing Core Facility (RRID:SCR_014840) | BTC | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th,2024. Core facility that provides the resources to investigate sensory, motor and complex behavioral testing in rat and mouse models. The facility offers standard neurobehavioral tests, customized test batteries, training for independent use of the equipment, data interpretation and anlaysis. | core facility, la jolla, behavioral, behavior, sensory, motor, neurobehavioral, test, rat, mouse | Salk Institute Behavior Testing Core Facility ; NINDS Neuroscience Core Grant |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014840 | SciCrunch Registry | 2026-10-17 01:28:50 | 0 | |||||||||
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Pennsylvania State University SLEIC Resource Report Resource Website 1+ mentions |
Pennsylvania State University SLEIC (RRID:SCR_014922) | PSU SLEIC | access service resource, service resource | Imaging center dedicated to fostering research in the social, behavioral, biological, engineering, and materials sciences where imaging methodologies play a central role. The SLEIC provides the Penn State research community with instrumentation, technological and substantive expertise, educational opportunities, and financial support for conducting magnetic resonance imaging (MRI) and electrophysiology (EEG, ERP) experiments. | access service resource, imaging center, imaging, social science, behavioral science, engineering, material science, biological science | is hosted by: Pennsylvania State University | PMID:27993674 | Available to affiliated researchers | SCR_014922 | SciCrunch Registry | Pennsylvania State University Social Life and Engineering Imaging Center, Penn State SLEIC | 2026-10-17 01:28:50 | 1 | |||||||
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SPEX2 Resource Report Resource Website 1+ mentions |
SPEX2 (RRID:SCR_014923) | data analysis software, data processing software, sequence analysis software, software application, software resource | Automatic software program for profiling spatial gene expression patterns from Fly embryo ISH images. It utilizes image-based genome-scale profiling of whole-body mRNA patterns. | software, spatial gene expression, fly, embryo, extraction, mrna, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Carnegie Mellon University; Pennsylvania; USA |
PMID:20529936 | biotools:spex2 | https://bio.tools/spex2 | SCR_014923 | SciCrunch Registry | 2026-10-17 01:29:07 | 1 | ||||||||
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University of California San Diego - University of California Los Angeles Diabetes Research Center Resource Report Resource Website |
University of California San Diego - University of California Los Angeles Diabetes Research Center (RRID:SCR_015100) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center across five institutions for clinical research in diabetes. Collaborators include UC San Diego's School of Medicine, Salk Institute, Cedars-Sinai Medical Center, UC Los Angeles' School of Medicine, and LA Biomedical Research Center. | diabetes research, research collaboration, research network, metabolic research, southern california |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility is parent organization of: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility has organization facet: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK063491 | Available to the research community | http://derc.ucsd.edu/index.html | SCR_015100 | SciCrunch Registry | 2026-10-17 01:28:53 | 0 | |||||||
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DOGMA Resource Report Resource Website 100+ mentions |
DOGMA (RRID:SCR_015060) | software resource, web application | Web-based annotation tool for plant chloroplasts and animal mitochondrial genomes. DOGMA allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. | chloroplast, mitochondria, genome annotation, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian |
PMID:15180927 | Freely available | biotools:DOGMA | https://bio.tools/DOGMA | SCR_015060 | SciCrunch Registry | Dual Organellar GenoMe Annotator, Dual Organellar GenoMe Annotator (DOGMA) | 2026-10-17 01:28:52 | 428 | ||||||
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University of Alabama at Birmingham Diabetes Research Center Resource Report Resource Website |
University of Alabama at Birmingham Diabetes Research Center (RRID:SCR_015107) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center which operates in collaboration with the University of Alabama Birmingham Comprehensive Diabetes Center to promote excellence in diabetes research and patient care. The DRC supports the areas of animal physiology, human biology and intervention and translational research. It focuses on developing new methods to treat, prevent, and ultimately cure diabetes and its complications. | diabetes, animal physiology, human biology |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: University of Alabama at Birmingham; Alabama; USA is parent organization of: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core is parent organization of: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility is parent organization of: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility has organization facet: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK DK079626 | Available to the research community, Acknowledgement requested | SCR_015107 | SciCrunch Registry | 2026-10-17 01:28:59 | 0 | ||||||||
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Michigan Diabetes Research Center Resource Report Resource Website 1+ mentions |
Michigan Diabetes Research Center (RRID:SCR_015112) | MDRC | access service resource, core facility, service resource | Multidisciplinary unit of the University of Michigan funded by the National Institute of Diabetes and Digestive and Kidney Diseases/National Institute of Health. Promotes new discoveries and enhance scientific progress through the support of basic and clinical research related to diabetes, its complications, and related disorders. Creates environment that supports innovative research; attracts and retains early stage investigators and investigators new to diabetes research; provides core services that leverage funding and unique expertise; fosters interdisciplinary collaborations; raises awareness and interest in fundamental and clinical diabetes research at their institutions, as well as locally, regionally, and nationally. | clinical diabetes research, multidisciplinary research, endocrine and metabolic disorders, |
is listed by: NIDDK Information Network (dkNET) has organization facet: Michigan Diabetes Research Center Administrative Core Facility has organization facet: Michigan Diabetes Research Center Clinical Core Facility has organization facet: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility has organization facet: Michigan Diabetes Research Center Molecular Genetics Core Facility has organization facet: Michigan Diabetes Research Center Animal Studies Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK020572 | Restricted | http://diabetesresearch.med.umich.edu | SCR_015112 | SciCrunch Registry | Michigan Diabetes Research Center (MDRC) | 2026-10-17 01:28:53 | 4 | |||||
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Boston Area Diabetes Endocrinology Research Center Resource Report Resource Website |
Boston Area Diabetes Endocrinology Research Center (RRID:SCR_015072) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Consortium of laboratory-based and clinical investigators who research etiology, pathogenesis, treatment and cure of type 1 and type 2 diabetes, and their associated microvascular and atherosclerotic complications. | Endicronology, insulin, diabetes |
is listed by: NIDDK Information Network (dkNET) is parent organization of: Boston Area Diabetes Endocrinology Research Center Molecular Biology has organization facet: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility has organization facet: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility has organization facet: Boston Area Diabetes Endocrinology Research Center Molecular Biology has organization facet: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet has organization facet: Boston Area Diabetes Endocrinology Research Center Transgenic is organization facet of: Diabetes Research Centers |
Type 1 diabetes, Type 2 diabetes, Diabetes | NIDDK P30DK057521 | Available to the research community | SCR_015072 | SciCrunch Registry | 2026-10-17 01:28:52 | 0 | ||||||||
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Einstein-Mount Sinai Diabetes Research Center Resource Report Resource Website |
Einstein-Mount Sinai Diabetes Research Center (RRID:SCR_015070) | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Research center that facilitates the research of diabetes and related studies in obesity, metabolism and endocrinology | clinical diabetes center, obesity research, metabolism research, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers has parent organization: Albert Einstein College of Medicine; New York; USA is parent organization of: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility is parent organization of: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility has organization facet: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | New York Obesity Research Center ; Center for the Study of Diabetic Complications ; Montefiore Clinical Diabetes Center ; NIDDK P30DK020541 |
Available to the research community | SCR_015070 | SciCrunch Registry | 2026-10-17 01:29:09 | 0 | ||||||||
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Online Resource for Community Annotation of Eukaryotes Resource Report Resource Website 10+ mentions |
Online Resource for Community Annotation of Eukaryotes (RRID:SCR_014989) | OrcAE, ORCAE | data or information resource, narrative resource, wiki | Online genome annotation tool for validating and correcting gene annotations. OrcAE is community-driven and can be edited by account-holders in the research community. | genome annotation, gene validation, community driven, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Bioinformatics Gent has parent organization: Ghent University; Ghent; Belgium has parent organization: VIB; Flanders; Belgium |
PMID:23132114 | Free, Account required, The research community can contribute to this resource | biotools:orcae | https://bio.tools/orcae | SCR_014989 | SciCrunch Registry | Online Resource for Community Annotation of Eukaryotes (OrcAE) | 2026-10-17 01:28:52 | 17 | |||||
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LTQ-Orbitrap Fusion Tribrid Mass Spectrometer Resource Report Resource Website 1+ mentions |
LTQ-Orbitrap Fusion Tribrid Mass Spectrometer (RRID:SCR_014992) | Mass spectrometer that combines quadrupole, ion trap, and Orbitrap mass analysis. | mass spectrometer, quadrupole, ion trap, orbitrap, thermofisher scientific, proteomic, compound | Available for purchase, Commercially available | SCR_014992 | SciCrunch Registry | Orbitrap Fusion Tribrid Mass Spectrometer | 2026-10-17 01:28:58 | 9 | |||||||||||
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MedCalc Resource Report Resource Website 10000+ mentions |
MedCalc (RRID:SCR_015044) | data analysis software, data processing software, software application, software resource | Statistical software for ROC curve analysis. MedCalc performs several statistical tests such as method comparison, method evaluation, reference intervals, and meta-analysis. | statistic, statistical analysis, roc curve, reference software | is listed by: SoftCite | Commercially available, Available for purchase, Trial available | SCR_015044 | SciCrunch Registry | 2026-10-17 01:28:58 | 19712 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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