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http://cgl.imim.es/fcp/

FCP is a publicly accessible web tool dedicated to analyzing the current state and trends of available proteome structures along the classification schemes of enzymes and nuclear receptors. It offers both graphical and quantitative data on the degree of functional coverage in that portion of the proteome by existing structures and on the bias observed in the distribution of those structures among proteins. Users can choose to search the website based on structures or ligands, and can also sort by enzyme or receptor. Users can also view data based on structural and population (species) filters.

Proper citation: Functional Coverage of the Proteome (RRID:SCR_007654) Copy   

•   Source: SciCrunch Registry

http://jbirc.jbic.or.jp/hinv/evola/

Evola is a sub-database of H-InvDB, providing ortholog data as evolutionary annotation. Representative transcripts (one transcript per one gene locus) were analyzed as genes. Orthologs were first detected by computational analysis. Then, more reliable orthologs were determined by manual curation inspecting the phylogenetic trees., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Evola (RRID:SCR_007651) Copy   

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http://www.everest.cs.huji.ac.il

EVEREST is an automatic process of identifying and classifying of protein domains. Users can search for specific proteins using Protein ID or name, browse through protein families, and upload/download protein sequence data. EVEREST combines methodologies from the fields of finite metric spaces, machine learning and statistical modeling and achieves state of the art results. The process begins by constructing a database of protein segments that emerge in an all vs. all pairwise sequence comparison. It then proceeds to cluster these segments into putative domain families, choosing the best putative families using machine learning techniques, and creating a statistical model for each of the chosen families. This procedure is then iterated: The aforementioned statistical models are used to scan all protein sequences, to recreate a segment database and to cluster them again. Performance was evaluated by comparing with Pfam and SCOP.

Proper citation: EVEREST - EVolutionary Ensembles of REcurrent SegmenTs (RRID:SCR_007650) Copy   

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http://euhcvdb.ibcp.fr

THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented August 23, 2016. The euHCVdb is oriented towards protein sequence, structure, function analysis and structural biology of the Hepatitis C Virus. It is monthly updated from the EMBL Nucleotide sequence database and maintained in a relational database management system (PostgreSQL). Programs for parsing the EMBL database flat files, annotating HCV entries, filling up and querying the database used SQL and Java programming languages. Great efforts have been made to develop a fully automatic annotation procedure thanks to a reference set of HCV complete annotated well-characterized genomes of various genotypes. This automatic procedure ensures standardization of nomenclature for all entries and provides genomic regions/proteins present in the entry, bibliographic reference, genotype, interesting sites (e.g. HVR1) or domains (e.g. NS3 helicase), source of the sequence (e.g. isolate) and structural data that are available as protein 3D models. The euHCVdb is funded as part of the HepCVax cluster (EC grant QLK2-CT-2002-01329) and viRgil network of excellence (EC grant LSHM-CT-2004-503359).

Proper citation: euHCVdb: The European HCV database (RRID:SCR_007645) Copy   

•   Source: SciCrunch Registry

http://www.cbil.upenn.edu/EpoDB/

Database of genes that relate to vertebrate red blood cells. It includes DNA sequence, structural features, protein information, gene expression information and transcription factor binding sites. This database is no longer maintained or updated.

Proper citation: EpoDB - Erythropoiesis Database (RRID:SCR_007642) Copy   

•   Source: SciCrunch Registry

http://bioinfo.mc.vanderbilt.edu/ERGR/

The aim of the Ethanol-Related Gene Resource (ERGR) database is to provide a comprehensive and useful gene resource to the Ethanol/Alcohol research community. Currently, the ERGR database contains more than 30 large datasets from literature and 21 mouse QTLs from public database. These data are from 5 organisms (human, mouse, rat, fly and worm) and produced by multiple approaches (expression, association, linkage, QTL, literature search etc). Users can browse or search the database in different levels. Moreover, ERGR provides data integration (union and intersection) and candidate gene selection based on multiple datasets or organisms.

Proper citation: ERGR- Ethanol-Related Genome Resource (RRID:SCR_007643) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/william-harvey-research-limited

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. A Contract research organization offering pre-clinical drug evaluation service specialising in models of cardiovascular and inflammatory diseases such as myocardial ischemia, haemorrhagic shock, endotoxaemia also inflammatory bowel disease (IBD), neutrophil migration, pulmonary fibrosis, systemic lupus erthematosus (SLE), adjuvant arthritis, collagen II arthritis, EAE and many more.

Proper citation: William Harvey Research Limited (RRID:SCR_012574) Copy   

•   Source: SciCrunch Registry

http://www.medicine.iu.edu/

Medical school and medical research center connected to Indiana University. Its principal research and medical center is on Indiana University – Purdue University Indianapolis campus in Indianapolis.

Proper citation: Indiana University School of Medicine; Indiana; USA (RRID:SCR_012916) Copy   

•   Source: SciCrunch Registry

http://www.ed.ac.uk/schools-departments/vet/

At the vanguard of veterinary education since William Dick founded the School in 1823, the Royal (Dick) School of Veterinary Studies is one of the world''s most innovative and influential centers for clinical care and student education. Using outstanding clinical facilities, we provide veterinary services of the highest standards and a stimulating educational experience for our students, within an environment rich in high quality interdisciplinary research. Affectionately known as the ''Dick Vet'', the School is part of the College of Medicine and Veterinary Medicine at the University of Edinburgh, one of the top 15 centers of biomedical research in the world with annual research awards in excess of 100 million pounds. Our research spans all aspects of veterinary medicine, from molecules and genes through to animal and human populations. Our partnership with the Medical School is summed up in the ethos - One Health. Our vision is simple yet ambitious: we want to take the School''s work to a new level as a world leader in veterinary research and training. By 2011 we will have invested over 100 million pounds in building state-of-the-art teaching facilities, clinics and laboratories. We attract, and actively recruit, the world''s leading veterinary teachers, clinicians and researchers to maintain our customary high ranking in the UK league tables for international excellence in our teaching and research.

Proper citation: University of Edinburgh Royal (Dick) School of Veterinary Studies; Scotland; United Kingdom (RRID:SCR_012845) Copy   

•   Source: SciCrunch Registry

http://www.tsu.edu/

Proper citation: Texas Southern University; Texas; USA (RRID:SCR_012737) Copy   

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http://www.mq.edu.au/

Proper citation: Macquarie University; Sydney; Australia (RRID:SCR_012796) Copy   

•   Source: SciCrunch Registry

http://www.ucdavis.edu/

Proper citation: University of California at Davis; California; USA (RRID:SCR_012713) Copy   

•   Source: SciCrunch Registry

http://www.mcgill.ca/medicine/

Proper citation: McGill University Faculty of Medicine; Montreal; Canada (RRID:SCR_012888) Copy   

•   Source: SciCrunch Registry

http://www.med.uc.edu/Home.aspx

Proper citation: University of Cincinnati College of Medicine; Ohio; USA (RRID:SCR_012889) Copy   

•   Source: SciCrunch Registry

http://www.uni-hamburg.de/index_e.html

Public research and education university in Northern Germany with main campus located in central district of Rotherbaum, with affiliated institutes and research centres spread around city state.

Proper citation: University of Hamburg; Hamburg; Germany (RRID:SCR_012922) Copy   

•   Source: SciCrunch Registry

https://ctsi.ucsf.edu

An institute which provides infrastructure, services, and training to support clinical and translational research. It develops broad coalitions and partnerships at the local and national levels to enable a transformation of the research environment.

Proper citation: UCSF Clinical and Translational Science Institute (RRID:SCR_014711) Copy   

•   Source: SciCrunch Registry

https://github.com/lapphe/raspberry_rat

Software Python platform for recording, converting, and uploading videos to cloud and for performing scheduled video recordings. Repository also includes wiki section with comprehensive guide to setting up Raspberry Pis for this purpose. Raspberry Pis are often cheaper than camcorder and can produce HD video. They are also equipped with infrared camera, making them ideal for recordings of animals that are active in low light conditions.

Proper citation: Rasberry rat (RRID:SCR_023467) Copy   

•   Source: SciCrunch Registry

https://pypi.org/

Software repository for Python programming language.Used to find and install software developed and shared by Python community.

Proper citation: PyPI (RRID:SCR_023145) Copy   

•   Source: SciCrunch Registry

https://github.com/PIEFoundry/Microfabrication/wiki/Parylene-MEA-Fabrication

Parylene MEA Fabrication is related to SPARC. Repository for standard fabrication procedure for Parylene C microelectrode arrays and similar devices.

Proper citation: HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS (RRID:SCR_023681) Copy   

•   Source: SciCrunch Registry

https://www.pkdcure.org/

Organization and funder of polycystic kidney disease research to find treatments. The organization also raises awareness for the disease through education, advocacy and support.

Proper citation: PKD Foundation (RRID:SCR_000209) Copy   

•   Source: SciCrunch Registry