Tools   Select Another Resource Report Type

http://www.scienceexchange.com/facilities/microbiology-quality-associates-inc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 22, 2024. Microbiology & Quality Associates, Inc., located in the San Francisco Bay Area, is a service organization providing a variety of services to life sciences companies. Our services include: contract biotech development services, testing services, consulting, validation services, calibration services, training, and scientific resources. MQA is FDA registered. Our Quality System comply with GXP regulations and ISO 17025/9001. We provide services to a wide variety of companies in biotechnology, pharmaceutical, medical devices, nutritional products, dialysis centers, semiconductors, and other industries. MQA staff has many years of hands-on experience at pharmaceutical, biotechnology and medical device companies.

Proper citation: Microbiology and Quality Associates (RRID:SCR_012270) Copy   

•   Source: SciCrunch Registry

https://us.progen.com/About-Us/

ProGen - Protein & Gene Engineering specializes in custom molecular biology services including DNA cloning, sub-cloning, codon optimized artificial gene synthesis, site-directed mutagenesis and large scale custom projects such as DNA isolation and purification. The custom products of the company are used for gene engineering to study gene expression regulatory mechanisms, protein engineering, and analysis of gene and protein function. Customers of the company include research laboratories in academia, clinical researchers in medical institutes and biotechnology companies. In addition to our custom cloning services, as an authorized Israeli representative of SBS Genetech Co., we market molecular biology products of SBS at competitive prices. SBS is one of the largest sources of synthetic oligonucleotides. The range of the products cover biochemicals, enzymes and PCR products. As a young company we are highly motivated to deliver high quality services and products at lowest prices with a rapid schedule of delivery. We guarantee full customer satisfaction on all products and services.

Proper citation: ProGen - Protein and Gene Engineering (RRID:SCR_012405) Copy   

•   Source: SciCrunch Registry

https://www.ohiopeptide.com/

We provide custom synthesis of peptides and peptide conjugates.

Proper citation: Ohio Peptide (RRID:SCR_012407) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/microtech-lab

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 22, 2023. Microtech Lab is a laboratory open to all researchers involved in the development of genomics projects of basic, translational, and clinical research. Our lab provides the support and tools for microarray experiments for the following applications: 1) Analysis of gene expression profiles 2) Analysis of the expression profiles of microRNA (miRNA)

Proper citation: Microtech Lab (RRID:SCR_012371) Copy   

•   Source: SciCrunch Registry

https://www.promab.com/about-us

Develops and commercializes recombinant proteins and custom monoclonal antibodies through integration of bioinformatics, gene cloning, protein expression and purification, and immunology, using high-throughput technologies. ProMab applies its proteins and antibodies to deliver diagnostic products as well as services targeting the global biomedical market through collaborations with other biotechnology and bio-reagent companies.

Proper citation: ProMab Biotechnologies Inc. (RRID:SCR_012380) Copy   

•   Source: SciCrunch Registry

https://oligofactory.com/

Provides oligonucleotides. Synthesizes custom DNA/RNA oligonucleotides for scientific and therapeutic communities.

Proper citation: Oligo Factory (RRID:SCR_012567) Copy   

•   Source: SciCrunch Registry

https://www.tglabs.com/home.html

TG Labs Company, located in Colorado, has two divisions Technical division and Industrial division. Technical Division operates scientific, medical and chemical discovery laboratory in Englewood, Colorado. This division also develops special devices, equipment and processes for the medical, chemical and environmental industries. We offer proven solutions from concept through full scale production, including regulatory standards.

Proper citation: TG Labs (RRID:SCR_012581) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/sysbiobig/movarsim

Software simulator that leverages data-driven information to set both variants and reads characteristics, producing realistic tumoral samples. Computational modelling of cancer-specific variants and sequencing reads characteristics for realistic tumoral sample simulation.

Proper citation: MOVARSim (RRID:SCR_025388) Copy   

•   Source: SciCrunch Registry

https://github.com/COMBINE-lab/maximum-likelihood-relatedness-estimation

C++ program to infer biological relatedness from low coverage 2nd generation sequencing data. It uses information from genotype likelihoods rather than observed genotypes in maximum likelihood framework in order to estimate the overall coefficient of relatedness as well as individual kinship components between two samples. Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data.

Proper citation: lcMLkin (RRID:SCR_025418) Copy   

•   Source: SciCrunch Registry

https://github.com/PhysiCell-Tools/PhysiCell-Studio

Software graphical tool to allow easy editing of (XML) model, create initial positions of cells, run simulation, and visualize results. To contribute, fork and make PRs to the development branch. Used to create, execute, and visualize multicellular model using PhysiCell.

Proper citation: PhysiCell Studio (RRID:SCR_025311) Copy   

•   Source: SciCrunch Registry

https://github.com/monologue0924/COMSOL-model-of-Magnetic-coil-

Software application as model of magnetic field distribution of magnetic coil visualized using COMSOL Multiphysics.

Proper citation: COMSOL model of Magnetic coil (RRID:SCR_025426) Copy   

•   Source: SciCrunch Registry

https://github.com/aprismatic/prismadb

Software application as cryptographic security layer for relational database systems, that currently supports Microsoft SQL Server, MySQL, MariaDB, PostgreSQL and CockroachDB. Security layer for relational database systems.

Proper citation: Prisma/DB (RRID:SCR_025246) Copy   

•   Source: SciCrunch Registry

https://github.com/TheLeeLab/cameraCalibrationCMOS

Software for performing pixelwise calibration of sCMOS cameras. MATLAB code and instructions for routine camera calibration.

Proper citation: cameraCalibrationCMOS (RRID:SCR_025339) Copy   

•   Source: SciCrunch Registry

https://github.com/marbl/Winnowmap

Software tool as long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap2 computes each read mapping through collection of confident subalignments. This approach is more tolerant of structural variation and more sensitive to paralog-specific variants within repeats.

Proper citation: Winnowmap (RRID:SCR_025349) Copy   

•   Source: SciCrunch Registry

https://github.com/con/duct

Software application as helper to run command, capture stdout/stderr and details about running.

Proper citation: con/duct (RRID:SCR_025436) Copy   

•   Source: SciCrunch Registry

https://whatshap.readthedocs.io/en/latest/

Software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. Used for long reads, but works also well with short reads.

Proper citation: WhatsHap (RRID:SCR_025319) Copy   

•   Source: SciCrunch Registry

https://github.com/sokrypton/ColabFold

Software application offers accelerated prediction of protein structures and complexes by combining homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. Used for protein folding.

Proper citation: ColabFold (RRID:SCR_025453) Copy   

•   Source: SciCrunch Registry

https://github.com/PacificBiosciences/pbmm2?tab=readme-ov-file

Software application as minimap2 frontend for PacBio native data formats. SMRT C++ wrapper for minimap2's C API.

Proper citation: pbmm2 (RRID:SCR_025549) Copy   

•   Source: SciCrunch Registry

https://github.com/gui11aume/starcode

Software for DNA sequence clustering. General purpose DNA sequence clustering tool with strong focus on error correction.

Proper citation: Starcode (RRID:SCR_025483) Copy   

•   Source: SciCrunch Registry

https://biodiversityinformatics.amnh.org/open_source/dotdotgoose/

Software tool to assist with manually counting objects in images. Used for many conservation applications.

Proper citation: DotDotGoose (RRID:SCR_025485) Copy   

•   Source: SciCrunch Registry