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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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AmerUrological's channel - YouTube Resource Report Resource Website |
AmerUrological's channel - YouTube (RRID:SCR_005860) | AmerUrological's channel, AmerUrologicals channel | data or information resource, video resource | AmerUrological's channel - YouTube are videos put out by the American Urological Association. | urology | has parent organization: American Urological Association | Urologic disease | nlx_149399 | SCR_005860 | American Urological Association - YouTube channel, AUA YouTube channel, AmerUrologicals channel - YouTube | 2026-08-10 09:32:40 | 0 | |||||||
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Kabat Database of Sequences of Proteins of Immunological Interest Resource Report Resource Website 1+ mentions |
Kabat Database of Sequences of Proteins of Immunological Interest (RRID:SCR_006465) | data or information resource, database | The Kabat Database determines the combining site of antibodies based on the available amino acid sequences. The precise delineation of complementarity determining regions (CDR) of both light and heavy chains provides the first example of how properly aligned sequences can be used to derive structural and functional information of biological macromolecules. The Kabat database now includes nucleotide sequences, sequences of T cell receptors for antigens (TCR), major histocompatibility complex (MHC) class I and II molecules, and other proteins of immunological interest. The Kabat Database searching and analysis tools package is an ASP.NET web-based portal containing lookup tools, sequence matching tools, alignment tools, length distribution tools, positional correlation tools and much more. The searching and analysis tools are custom made for the aligned data sets contained in both the SQL Server and ASCII text flat file formats. The searching and analysis tools may be run on a single PC workstation or in a distributed environment. The analysis tools are written in ASP.NET and C# and are available in Visual Studio .NET 2003/2005/2008 formats. The Kabat Database was initially started in 1970 to determine the combining site of antibodies based on the available amino acid sequences at that time. Bence Jones proteins, mostly from human, were aligned, using the now-known Kabat numbering system, and a quantitative measure, variability, was calculated for every position. Three peaks, at positions 24-34, 50-56 and 89-97, were identified and proposed to form the complementarity determining regions (CDR) of light chains. Subsequently, antibody heavy chain amino acid sequences were also aligned using a different numbering system, since the locations of their CDRs (31-35B, 50-65 and 95-102) are different from those of the light chains. CDRL1 starts right after the first invariant Cys 23 of light chains, while CDRH1 is eight amino acid residues away from the first invariant Cys 22 of heavy chains. During the past 30 years, the Kabat database has grown to include nucleotide sequences, sequences of T cell receptors for antigens (TCR), major histocompatibility complex (MHC) class I and II molecules and other proteins of immunological interest. It has been used extensively by immunologists to derive useful structural and functional information from the primary sequences of these proteins. | functional, align, alignment, amino acid, antibody, antigen, biological, cdr, chain, class i, class ii, combining, complementarity, complex, delineation, heavy, histocompatibility, human, immunological, immunological database, light, macromolecule, mhc, molecule, nucleotide, position, protein, receptor, region, sequence, structural, t cell | has parent organization: Northwestern University; Illinois; USA | nif-0000-21233 | SCR_006465 | Kabat Database | 2026-08-10 09:32:50 | 2 | |||||||||
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Recon x Resource Report Resource Website 10+ mentions |
Recon x (RRID:SCR_006345) | Recon x | data or information resource, database | A comprehensive biochemical knowledge-base on human metabolism, this community-driven, consensus metabolic reconstruction integrates metabolic information from five different resources: * Recon 1, a global human metabolic reconstruction (Duarte et al, PNAS, 104(6), 1777-1782, 2007) * EHMN, Edinburgh Human Metabolic Network (Hao et al., BMC Bioinformatics 11, 393, 2010) * HepatoNet1, a liver metabolic reconstruction (Gille et al., Molecular Systems Biology 6, 411, 2010), * Ac/FAO module, an acylcarnitine/fatty acid oxidation module (Sahoo et al., Molecular bioSystems 8, 2545-2558, 2012), * a human small intestinal enterocytes reconstruction (Sahoo and Thiele, submitted). Additionally, more than 370 transport and exchange reactions were added, based on a literature review. Recon 2 is fully semantically annotated (Le Nov��re, N. et al. Nat Biotechnol 23, 1509-1515, 2005) with references to persistent and publicly available chemical and gene databases, unambiguously identifying its components and increasing its applicability for third-party users. Here you can explore the content of the reconstruction by searching/browsing metabolites and reactions. Recon 2 predictive model is available in the Systems Biology Markup Language format. | metabolism, annotation, metabolite, reaction, genome, reconstruction | has parent organization: University of Iceland; Reykjavik; Iceland | Knut and Alice Wallenberg Foundation ; Marie Curie International Reintegration Grant 249261; European Research Council 232816; Rannis research 100406022; Manchester Centre for Integrative Systems Biology BB/C008219/1; Bioprocessing Research Industry Club ; European Union FP7 201142; BBSRC BB/F005938; BBSRC BB/F00561X; DFG 0315756; DFG 0315741; NIGMS GM088244; NSF 0643548; Cystic Fibrosis Research Foundation 1060 |
PMID:23455439 | Free, Acknowledgement requested | nlx_152079 | SCR_006345 | Recon x Reconstruction of The Human Genome, Recon x - Reconstruction of The Human Genome, Recon x: Reconstruction of The Human Genome, Recon 2 | 2026-08-10 09:32:48 | 12 | |||||
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Atlas of Living Australia Resource Report Resource Website 100+ mentions |
Atlas of Living Australia (RRID:SCR_006467) | ALA | data or information resource, database | Online repository of information about Australian plants, animals, and fungi. Development started in 2006. The Commonwealth Scientific and Industrial Research Organisation is organisation significantly involved in development of ALA. | data sharing, biodiversity, image, photograph, dna, conservation, natural resource, literature, nomenclature, australia, morphology, life stage, stage, behavior, reproduction, habitat, genetic, region, species, portal, data set, data analysis service, metadata standard, web service, image collection, FASEB list |
is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing has parent organization: CSIRO has parent organization: GBIF - Global Biodiversity Information Facility |
Creative Commons Attribution License, v3 Australia License, Provider content may be covered by other Terms of Use, Http://www.ala.org.au/about-the-atlas/terms-of-use/ | nlx_152016, DOI:10.26197, DOI:10.25504/FAIRsharing.2f66da, r3d100010918, DOI:10.17616/R3VG9S | https://doi.org/10.26197, https://dx.doi.org/10.26197, http://doi.org/10.17616/R3VG9S, https://fairsharing.org/10.25504/FAIRsharing.2f66da, https://doi.org/10.17616/R3VG9S | SCR_006467 | 2026-08-10 09:32:53 | 174 | |||||||
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arXiv Resource Report Resource Website 500+ mentions |
arXiv (RRID:SCR_006500) | arXiv | data or information resource, database | Electronic archive and distribution server for research articles providing open access to more than 850,000 e-prints in Physics, Mathematics, Computer Science, Quantitative Biology, Quantitative Finance and Statistics. Users can retrieve papers via the web interface. Registered authors may use the web interface to submit their articles to arXiv. Authors can also update their submissions if they choose, though previous versions remain available. Listings of newly submitted articles in areas of interest are available via the web interface, via RSS feeds, and by subscription to automatic email alerts. | archive, e-print, physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electronic archive, research article, publishing, preprint, unpublished manuscript, scholarly communication, nonlinear sciences, biology, scholarly publishing, FASEB list |
is used by: PrePubMed has parent organization: Cornell University; New York; USA |
Cornell University; New York; USA ; Simons Foundation ; other Library Partners |
PMID:22859182 PMID:21833066 |
Open unspecified license, Account required, (for submissions), The community can contribute to this resource | nlx_152551 | SCR_006500 | arXiv.org | 2026-08-10 09:32:51 | 618 | |||||
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Mouse Genome Informatics (MGI) Resource Report Resource Website 1000+ mentions |
Mouse Genome Informatics (MGI) (RRID:SCR_006460) | MGI | data or information resource, database | International database for laboratory mouse. Data offered by The Jackson Laboratory includes information on integrated genetic, genomic, and biological data. MGI creates and maintains integrated representation of mouse genetic, genomic, expression, and phenotype data and develops reference data set and consensus data views, synthesizes comparative genomic data between mouse and other mammals, maintains set of links and collaborations with other bioinformatics resources, develops and supports analysis and data submission tools, and provides technical support for database users. Projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, and MouseCyc Project at MGI. | RIN, Resource Information Network, molecular neuroanatomy resource, human health, human disease, animal model, gene expression, phenotype, genotype, gene, pathway, orthology, tumor, strain, single nucleotide polymorphism, recombinase, function, blast, image, pathology, model, data analysis service, genome, genetics, gold standard, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is used by: Cytokine Registry is used by: NIH Heal Project is recommended by: Resource Identification Portal is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is listed by: NIH Data Sharing Repositories is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: MONARCH Initiative is related to: MouseCyc is related to: AmiGO is related to: Gene Expression Database is related to: Bgee: dataBase for Gene Expression Evolution is related to: HomoloGene is related to: Rat Gene Symbol Tracker is related to: Enhancer Trap Line Browser is related to: Integrated Brain Gene Expression is related to: MalaCards is related to: Gene Ontology is related to: BioMart Project is related to: NIH Data Sharing Repositories is related to: RIKEN integrated database of mammals is related to: JAX Neuroscience Mutagenesis Facility is related to: PhenoGO is related to: International Mouse Strain Resource is related to: Mouse Genome Database is related to: Mouse Tumor Biology Database has parent organization: Jackson Laboratory is parent organization of: Anatomy of the Laboratory Mouse is parent organization of: Mouse Genome Informatics Transgenes is parent organization of: Federation of International Mouse Resources is parent organization of: MGI GO Browser is parent organization of: Recombinase (cre) Activity is parent organization of: Mouse Genome Informatics: The Mouse Gene Expression Information Resource Project is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource is parent organization of: MGI strains is parent organization of: MPO is parent organization of: Phenotypes and Mutant Alleles is parent organization of: Human Mouse Disease Connection is parent organization of: Functional Annotation is parent organization of: Strains, SNPs and Polymorphisms is parent organization of: Vertebrate Homology is parent organization of: Batch Data and Analysis Tool is parent organization of: Nomenclature |
NHGRI HG000330; NHGRI HG002273; NICHD HD033745; NCI CA089713 |
PMID:19274630 PMID:18428715 |
Free, Freely available | nif-0000-00096, OMICS_01656, r3d100010266 | http://www.informatics.jax.org/batch, http://www.informatics.jax.org/submit.shtml, http://www.informatics.jax.org/expression.shtml, https://doi.org/10.17616/R35P54 | SCR_006460 | , MGI, Mouse Genome Informatics | 2026-08-10 09:32:50 | 1220 | ||||
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DisGeNET Resource Report Resource Website 1000+ mentions |
DisGeNET (RRID:SCR_006178) | DisGeNET | data or information resource, database | Database and discovery platform containing publicly available collections of genes and variants associated to human diseases. Integrates data from curated repositories, GWAS catalogues, animal models and scientific literature. | gene, disease, gene-disease association, gene-disease ontology, gene-disease text mining, text mining, genotype-phenotype, rdf, genotype, phenotype, gene-disease, variant-disease, FASEB list |
uses: Comparative Toxicogenomics Database (CTD) uses: Genetic Association Database uses: UniProt uses: Mouse Genome Database uses: Reactome uses: Unified Medical Language System uses: Entrez Gene uses: MEDLINE uses: National Center for Biomedical Ontology uses: National Cancer Institute Thesaurus uses: Human Phenotype Ontology uses: Semanticscience Integrated Ontology uses: Cytoscape uses: Literature-derived human gene-disease network uses: Rat Genome Database (RGD) uses: National Library of Medicine uses: PsyGeNET is used by: HmtPhenome is listed by: 3DVC is affiliated with: Gene-Disease Association Type Ontology has parent organization: Pompeu Fabra University; Barcelona; Spain |
EFPIA ; Instituto de Salud Carlos III-Fondo Europeo de Desarrollo Regional ; Elixir-Excelerate ; Innovative Medicines Initiative Joint Undertaking ; European Union Seventh Framework Programme ; European Union Horizon 2020 |
PMID:27924018 PMID:25877637 PMID:21695124 PMID:20861032 |
Restricted | nlx_151710, r3d100013301 | https://doi.org/10.17616/R31NJMR9 | SCR_006178 | database of gene disease associations | 2026-08-10 09:32:47 | 3128 | ||||
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RAP-DB Resource Report Resource Website 500+ mentions |
RAP-DB (RRID:SCR_006610) | RAP-DB | data or information resource, database | Database that provides the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. RAP-DB contains clone positions, structures and functions of genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. | genome sequence assembly, International Rice Genome Sequencing Project, manually curated annotation, sequence, genomics information, |
has parent organization: National Institute of Genetics; Shizuoka; Japan has parent organization: National Institute of Agrobiological Sciences; Ibaraki; Japan |
Japanese Ministry of Education Culture Sports Science and Technology MEXT NT05-3 42996 | PMID:23299411 PMID:18089549 |
Free, Freely available | SCR_015062, nif-0000-03385 | http://rapdb.lab.nig.ac.jp/ | SCR_006610 | Rice Annotation Project, Rice Annotation Project Database | 2026-08-10 09:32:57 | 837 | ||||
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DrugPort Resource Report Resource Website 1+ mentions |
DrugPort (RRID:SCR_006573) | DrugPort, Image | data or information resource, database | DrugPort provides an analysis of the structural information available in the Protein Data Bank (PDB) relating to drug molecules and their protein targets. The drug-target data comes from the DrugBank database. You can search the entries by identifier, test or by protein sequence, or you can use the browse options in the menu on the left. |
is related to: PDBsum is related to: DrugBank has parent organization: European Bioinformatics Institute |
nlx_57032 | SCR_006573 | 2026-08-10 09:32:56 | 8 | ||||||||||
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BoDD Resource Report Resource Website 1+ mentions |
BoDD (RRID:SCR_006592) | BoDD | data or information resource, database | BoDD is an electronic re-incarnation of BOTANICAL DERMATOLOGY by John Mitchell & Arthur Rook. This updated on-line version is made available to users with the kind permission of the original authors. The original edition has been digitized by Google Books. Although BoDD is actively being updated, updates are uploaded to the website only at about monthly intervals. A vast body of information collected by the Editor (Richard J. Schmidt PhD) awaits addition to the database. Users should be aware that some of the information that is currently accessible is neither accurate nor up-to-date. None of the information presented in BoDD should be regarded as a recommendation to treat any disease or disorder. The following are databases that are present in BoDD: -Balsaminaceae -Elaeagnaceae -Gelsemiaceae -Gentianaceae / Potaliacaceae -Hydroleaceae -Loganiaceae / Spigeliaceae / Strychnaceae -Martyniaceae -Orobanchaceae -Phrymaceae -Sabiaceae -Tamaricaceae | elaeagnaceae, gelsemiaceae, balsaminaceae, botanical, dermaotology, disease, disorder, gentianaceae, hydroleaceae, loganiaceae, martyniaceae, orobanchaceae, phrymaceae, plant, potaliacaceae, sabiaceae, spigeliaceae, strychnaceae, tamaricaceae, treatment | nif-0000-21067 | SCR_006592 | The Botanical Dermatology Database, Botanical Dermatology Database, the Botanical Dermatology Database | 2026-08-10 09:32:57 | 2 | |||||||||
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StemCellDB Resource Report Resource Website 1+ mentions |
StemCellDB (RRID:SCR_006305) | hES Cell Database | data or information resource, database | Database characterizing and comparing pluripotent human stem cells. The growth and culture conditions of all 21 human embryonic stem cell lines approved under the August 2001 Presidential Executive Order have been analyzed. Available to the scientific community are the results of our rigorous characterization of these cell lines at a more advanced level. | human pluripotent stem cell, human embryonic stem cell line, gene expression, pluripotent, adult, affymetrix microarray platform, agilent microarray platform, gene, stem cell, affymetrix, agilent, microarray, snp, array cgh, methylation, mirna array | has parent organization: National Institutes of Health | NINDS | PMID:23117585 | Public | nlx_151996 | SCR_006305 | NIH Stem Cell Database | 2026-08-10 09:32:48 | 1 | |||||
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SUB-cellular location database for Arabidopsis proteins II Resource Report Resource Website 1+ mentions |
SUB-cellular location database for Arabidopsis proteins II (RRID:SCR_006668) | data or information resource, database | SUBA provides a powerful tool to investigate subcellular localization in Arabidopsis. SUBA houses large scale proteomic and GFP localization sets from cellular compartments of Arabidopsis, and also contains pre-compiled bioinformatic predictions for protein subcellular localizations. The Database functions through the unification of disparate datasets and through the provision of a web accessible interface for the construction of user based queries resulting in a one-stop-shop for protein localization in this model plant. Subcellular localization information can contribute towards our understanding of protein function, protein redundancy and of biological inter-relationships. In an attempt to get a clearer picture of our experimental data and to more generally understand subcellular partitioning we have brought together various data sources to build SUBA. | arabidopsis, arabidopsis genome, gfp, protein subcellular localization, proteomics, subcellular, subcellular localization | has parent organization: University of Western Australia; Perth; Australia | nif-0000-03505 | SCR_006668 | SUBA II | 2026-08-10 09:32:54 | 4 | |||||||||
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Clinical Genomic Database Resource Report Resource Website 10+ mentions |
Clinical Genomic Database (RRID:SCR_006427) | CGD | data or information resource, database | Manually curated database of all conditions with known genetic causes, focusing on medically significant genetic data with available interventions. Includes gene symbol, conditions, allelic conditions, inheritance, age in which interventions are indicated, clinical categorization, and general description of interventions/rationale. Contents are intended to describe types of interventions that might be considered. Includes only single gene alterations and does not include genetic associations or susceptibility factors related to more complex diseases. | genomic sequencing, genome, clinical, pediatric, adult human, young human, genomic medicine, whole-genome sequencing, gene, organ system, intervention, gene symbol, condition, allelic condition, clinical categorization, manifestation, inheritance, age group, genetic variant, pathogenic mutation |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NHGRI | PMID:23696674 | Free, Freely available | nlx_152872, r3d100012332 | https://doi.org/10.17616/R31D3C | SCR_006427 | Clinical Genomics Database | 2026-08-10 09:32:52 | 10 | ||||
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Plant Genomes Central Resource Report Resource Website 10+ mentions |
Plant Genomes Central (RRID:SCR_006541) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 19, 2016. A database of completed or in-progress sequenced plant genomes. The list of plant sequencing projects in this page includes those that have reached the stage where active sequence determination is currently producing, or is expected to produce in the near future. In addition, GenBank accession are provided toward the goal of determining the sequence of that plant genome. | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03298 | http://www.ncbi.nlm.nih.gov/genomes/PLANTS/PlantList.html | SCR_006541 | Plant Genomes Central | 2026-08-10 09:32:55 | 10 | |||||||||
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HOMSTRAD - Homologous Structure Alignment Database Resource Report Resource Website 10+ mentions |
HOMSTRAD - Homologous Structure Alignment Database (RRID:SCR_006544) | HOMSTRAD | data or information resource, database | A curated database of structure-based alignments for homologous protein families. All known protein structure are clustered into homologous families (i.e., common ancestry), and the sequences of representative members of each family are aligned on the basis of their 3D structures using the programs MNYFIT, STAMP and COMPARER. These structure-based alignments are annotated with JOY and examined individually. | homologous structure, protein, protein family, protein structure, align, 3d structure, structure-based alignment |
is listed by: OMICtools has parent organization: National Institute of Biomedical Innovation; Osaka; Japan |
PMID:14681395 | nif-0000-02977, OMICS_00976 | http://www-cryst.bioc.cam.ac.uk/homstrad | SCR_006544 | HOMologous STRucture Alignment Database | 2026-08-10 09:32:55 | 24 | ||||||
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GeneDB Pfalciparum Resource Report Resource Website 1+ mentions |
GeneDB Pfalciparum (RRID:SCR_006567) | GeneDB_Pfalciparum, GeneDB Pfalciparum, GeneDB P. falciparum | data or information resource, database | Database of the most recent sequence updates and annotations for the P. falciparum genome. New annotations are constantly being added to keep up with published manuscripts and feedback from the Plasmodium research community. You may search by Protein Length, Molecular Mass, Gene Type, Date, Location, Protein Targeting, Transmembrane Helices, Product, GO, EC, Pfam ID, Curation and Comments, and Dbxrefs. BLAST and other tools are available. The P. falciparum 3D7 nuclear genome is 23.3 Mb in size, with a karyotype of 14 chromosomes. The G+C content is approximately 19%. The P. falciparum genome is undergoing re-annotation. This process started in October 2007 with a weeklong workshop co-organized by staff from the Wellcome Trust Sanger Intistute and the EuPathDB team. Ongoing curation and sequence checking is being carried out by the Pathogen Genomics group. Plasmodium falciparum is the most deadly of the five Plasmodium species that cause human malaria. Malaria has a massive impact on human health; it is the worlds second biggest killer after tuberculosis. Around 300 million clinical cases occur each year resulting in between 1.5 - 2.7 million deaths annually, the majority in sub-saharan Africa. It is estimated that 3,000 children under the age of five years fall victim to malaria each day. Around 40% of the worlds population are at risk. In collaboration with EuPathDB, genomic sequence data and annotations are regularly deposited on PlasmoDB where they can be integrated with other datasets and queried using customized queries. |
is used by: NIF Data Federation is related to: AmiGO is related to: PlasmoDB has parent organization: GeneDB |
Wellcome Trust | PMID:12368864 | nlx_13809 | SCR_006567 | Plasmodium falciparum homepage on GeneDB, Plasmodium falciparum 3D7 on GeneDB | 2026-08-10 09:32:52 | 6 | |||||||
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OMIA - Online Mendelian Inheritance in Animals Resource Report Resource Website 10+ mentions |
OMIA - Online Mendelian Inheritance in Animals (RRID:SCR_006436) | OMIA | data or information resource, database | Describes phenotype relationships with between breeds and genes. Catalogue/compendium of inherited disorders, other (single-locus) traits, and genes in 245 animal species. Database of genes, inherited disorders and traits in animal species other than human, mouse, and rats. Database contains textual information and references, as well as links to relevant records from OMIM, PubMed and Gene. | gene, inherited disorder, trait, disorder, genetic disorder, animal model, human disorder, homologue, phenotype, comparative biology, genotype, gold standard, FASEB list |
is used by: NIF Data Federation is related to: OMIM is related to: Ensembl Variation is related to: NCBI has parent organization: University of Sydney; Sydney; Australia has parent organization: NCBI |
Genetic disorder | H.G. Slater Foundation ; Australian Commonwealth ; International Livestock Centre for Africa ; Food and Agriculture Organization of the United Nations ; American Humane Association |
PMID:16381939 PMID:12520001 PMID:9638822 |
Free, Acknowledgement requested, The community can contribute to this resource, Non-commercial, Commercial with permission, Copyrighted | nif-0000-03215, r3d100010772 | https://doi.org/10.17616/R3VW5D | SCR_006436 | Online Mendelian Inheritance in Animals | 2026-08-10 09:32:50 | 39 | |||
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Worldwide Protein Data Bank (wwPDB) Resource Report Resource Website 1000+ mentions |
Worldwide Protein Data Bank (wwPDB) (RRID:SCR_006555) | wwPDB | data or information resource, database | Public global Protein Data Bank archive of macromolecular structural data overseen by organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). This site provides information about services provided by individual member organizations and about projects undertaken by wwPDB. Data available via websites of its member organizations. | 3-dimentional, bioinformatics, protein, research, structure, macromolecule, structural data, 3d spatial image, gold standard |
is used by: Ligand Expo is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Proteopedia - Life in 3D is related to: NRG-CING is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: DNA DataBank of Japan (DDBJ) is related to: PDBe - Protein Data Bank in Europe is related to: PDBe - Protein Data Bank in Europe is related to: PDBj - Protein Data Bank Japan is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: PDB Validation Server is related to: Structural Antibody Database is parent organization of: PDB-Dev works with: PDB-REDO |
NSF ; NIGMS ; DOE ; NLM ; NCI ; NINDS ; NIDDK ; European Molecular Biology Laboratory ; Heidelberg; Germany ; Wellcome Trust ; BBSRC ; NIH ; European Union ; NBDC - National Bioscience Database Center ; Japan Science and Technology Agency |
PMID:14634627 | Free, Freely available | nif-0000-23903, r3d100011104 | https://doi.org/10.17616/R3462V | SCR_006555 | World Wide Protein DataBank, wwPDB, Worldwide Protein Data Bank (wwPDB), World Wide Protein Data Bank, Worldwide Protein DataBank | 2026-08-10 09:32:56 | 1340 | ||||
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NCBI Epigenomics Resource Report Resource Website 10000+ mentions |
NCBI Epigenomics (RRID:SCR_006151) | Epigenomics | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. | genome-wide map, dna, histone, modification, epigenomic, genome, gold standard, gene mapping, gene amplification, genetic code, gene library, dna fingerprinting, chromatin, histone modification, dna methylation, dnaase footprinting, genome wide association study, gene expression |
is listed by: re3data.org is listed by: OMICtools is related to: Roadmap Epigenomics Project has parent organization: NCBI |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151643, OMICS_01848, r3d100010782 | https://doi.org/10.17616/R34K7J | http://www.ncbi.nlm.nih.gov/epigenomics | SCR_006151 | NCBI Epigenomic Gateway, National Center for Biotechnology Information Epigenomics, NCBI Epigenomic Hub | 2026-08-10 09:32:46 | 14631 | |||||
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Imaging Probe Development Center (IPDC) Resource Report Resource Website |
Imaging Probe Development Center (IPDC) (RRID:SCR_006744) | IPDC | data or information resource, database | A core synthesis facility dedicated to the preparation of imaging probes, initially for intramural NIH scientists, and later, for the extramural scientific community. The IPDC provides a mechanism for the production of sensitive probes for use by imaging scientists who cannot obtain such probes commercially. The probes to be made will encompass all major imaging modalities including radionuclide, magnetic resonance, and optical. Nearly all of these imaging probes are not commercially available, nor are they viable commercial products, and most are new compositions-of-matter (http://nihlibrary.ors.nih.gov/ipdcdb/IPDCDB_Search.asp). The IPDC was born from the realization that imaging technologies will be crucial in basic, translational, and clinical research in the 21st century, and that the synthetic chemistry required to reliably produce imaging probes lies at the heart of research within imaging technologies. To this end, the IPDC has recruited the equipment and expertise to concurrently synthesize multiple types of imaging probes for bioscientists with diverse research interests, encompassing all imaging modalities, including optical, radionuclide, ultrasound, and magnetic resonance. The IPDC embodies an exciting new approach to apply and combine chemistry and imaging sciences toward specific problems in biology and medical sciences, and will be a truly interdisciplinary effort aimed at maximizing returns from the revolutionary new discoveries being described in modern imaging. A significant part of the IPDC will also be directed, independently, to the discovery of new imaging approaches and compositions. The IPDC houses scientific staff, mostly chemists, who have interests and expertise in one or more aspects of molecular imaging. The IPDC is generating known and novel imaging probes for targeting receptors, cells, and tissues, and for preclinical in vivo evaluations by its intramural collaborators. Many such interesting agents have been described in the scientific literature, but are often not explored further due to lack of a reliable supply of reagent. One aspect of the IPDC''s mission is to rectify this situation. IPDC-supplied reagents will not be limited to one imaging modality, but will include the flexible application of diverse technologies. Also, the IPDC will seek to develop novel state-of-the-art imaging probes in collaboration with biological and biomedical intramural scientists who can provide or suggest suitable targeting agent/receptor pairs. The Imaging Probe Development Center (IPDC) was initiated in the incubator space of the Common Fund and has transitioned to the intramural program of the National Heart, Lung, and Blood Institute. | imaging, probe, optical, radionuclide, ultrasound, magnetic resonance, ct, x-ray, fmri, mri, near ir fluorescence, pet, spect, tem, molecular library | has parent organization: NHLBI Division of Intramural Research | NIH Roadmap for Medical Research | PMID:17994866 | nlx_146256 | SCR_006744 | Imaging Probe Development Center | 2026-08-10 09:33:00 | 0 |
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Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
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If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
