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https://www.axionbiosystems.com/products/axis-software
Software for multi electrode array recording for Axion Biosystems. Used in enhancing cardiac and neural analysis through data processing and signal monitoring.
Proper citation: AxIS (RRID:SCR_016308) Copy
https://github.com/ABCD-STUDY/FINDTHECAT
Software that conducts a jspsych test for response time evaluation. Used in the ABCD Study.
Proper citation: FINDTHECAT (RRID:SCR_016036) Copy
Software tool as image and photo editor for PCs that run Windows. Features user interface with support for layers, unlimited undo, special effects, and variety of useful and powerful tools.
Proper citation: paint.net (RRID:SCR_017641) Copy
https://github.com/ebtrexler/NetSuite
Software for dynamic clamping. It uses National Instruments Boards.
Proper citation: NetClamp (RRID:SCR_016275) Copy
https://github.com/ABCD-STUDY/stroop-task
Software that conducts the Stroop Color Task. Used in the ABCD Study.
Proper citation: stroop-task (RRID:SCR_016033) Copy
https://michaelbach.de/fract/index.html
Software tool for visual test battery in form of a free computer program.Can be run within your browser or download as a stand-alone program. Used by many vision labs, optometrists and ophthalmologists.
Proper citation: Freiburg Vision Test ('FrACT') (RRID:SCR_016439) Copy
https://github.com/AllenInstitute/MIES
Software for Electrophysiology functions. It was developed by the Allen Institute.
Proper citation: MIES (RRID:SCR_016443) Copy
https://github.com/lufuhao/ReadCleaner4Scaffolding
This pipeline and the included scripts are used to filter useful reads for SSPACE.
Proper citation: ReadCleaner4Scaffolding (RRID:SCR_016166) Copy
Software tool as open source programming language to build simple, reliable, and efficient software. Developed by team at Google and many contributors from open source community.
Proper citation: golang (RRID:SCR_017096) Copy
Music composition and manipulation software.
Proper citation: MuseScore (RRID:SCR_016161) Copy
http://sourceforge.net/projects/ipig/
Standalone software tool for the integration of peptide identifications from mass spectrometry experiments into existing genome browser visualizations.
Proper citation: iPiG (RRID:SCR_016164) Copy
https://github.com/ekg/fastahack
Software application for indexing and extracting sequences and subsequences from FASTA files. It will only generate indexes for FASTA files in which the sequences have self-consistent line lengths.
Proper citation: Fastahack (RRID:SCR_016090) Copy
Software tool for neuronal recording in intact brain.
Proper citation: Autopatcher (RRID:SCR_017464) Copy
https://getbootstrap.com/docs/3.3/
Programming language framework for HTML, CSS, and JS. It is used for developing responsive, mobile projects on the web.
Proper citation: Bootstrap CSS (RRID:SCR_016096) Copy
http://www.sanger.ac.uk/science/tools/alien-hunter
Software for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). The predictions (embl format) can be automatically loaded into Artemis genome viewer.
Proper citation: Alien-hunter (RRID:SCR_015967) Copy
https://compumedicsneuroscan.com/product/stim2-precise-stimulus-presentation/
Software environment for custom stimulus and task design as well as presentation. Compumedics Neuroscan’s design system which can be integrated in fMRI, MEG, and other functional neuro-imaging applications. Provides interface to design and present visual and auditory stimulation paradigms.
Proper citation: Stim2 (RRID:SCR_016751) Copy
https://www.lenntech.com/calculators/activity/activity-coefficient.htm
Software tool to calculate the activity coefficient of an ion in solution by Lenntech B.V. Determines the ionic strength of solution by using the concentration of ions present in drinking water.
Proper citation: Lenntech activity coefficient calculator (RRID:SCR_016475) Copy
https://github.com/HMPNK/CSA2.6
Software pipeline for high-throughput chromosome level vertebrate genome assembly. Pipeline, which after contig assembly performs post assembly improvements by ordering assembly and closing gaps, as well as splitting of low supported regions.
Proper citation: Chromosome Scale Assembler (RRID:SCR_017960) Copy
http://rkscope.sourceforge.net/
Two photon microscope control software with multi area capabilities.
Proper citation: Scope (RRID:SCR_017454) Copy
https://github.com/vlchaplin/pyRayleighCuda
Python Rayleigh-Sommerfeld integral for acoustics with optional CUDA graphics processing unit (GPU) implementation.
Proper citation: pyRayleighCuda (RRID:SCR_017453) Copy
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