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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University of Tunis El Manar; Tunis; Tunisia Resource Report Resource Website |
University of Tunis El Manar; Tunis; Tunisia (RRID:SCR_011736) | institution, university | is parent organization of: BACTIBASE | SCR_011736 | Universite de Tunis El Manar, University of Tunis El Manar, University of Tunis El-Manar | 2026-08-10 09:34:19 | 0 | ||||||||||||
|
University of Vienna; Vienna; Austria Resource Report Resource Website 1+ mentions |
University of Vienna; Vienna; Austria (RRID:SCR_011741) | institution, university | Public university located in Vienna, Austria. It was founded in 1365 and is the oldest university in the German-speaking world. |
is related to: Kinetics for Drug Discovery is related to: Open PHACTS is parent organization of: big-PI Predictor is parent organization of: HvrBase++- an mtDNA database is parent organization of: probeBase is parent organization of: Medical University of Vienna; Vienna; Austria is parent organization of: Open PHACTS is parent organization of: NextGenMap is parent organization of: Vienna RNA is parent organization of: R is parent organization of: IQ-TREE |
nlx_52021 | SCR_011741 | Universität Wien, Universitat Wien, University of Vienna | 2026-08-10 09:34:19 | 2 | ||||||||||
|
Uppsala University; Uppsala; Sweden Resource Report Resource Website 1+ mentions |
Uppsala University; Uppsala; Sweden (RRID:SCR_011751) | UU | institution, university |
is related to: Predict-TB is related to: OncoTrack is related to: European Gram Negative AntiBacterial Engine is related to: ORBITO is related to: READNA is related to: LifeGene is parent organization of: Patchwork is parent organization of: mtDB - Human Mitochondrial Genome Database is parent organization of: Hetero-compound Information Centre- Uppsala is parent organization of: Distributed Annotation System is parent organization of: LCB-DWH is parent organization of: ProbeMaker is parent organization of: European Gram Negative AntiBacterial Engine is parent organization of: ORBITO is parent organization of: SciLifeLab is parent organization of: LSQMAN is parent organization of: BlobFinder is parent organization of: CopyNumber450kCancer is parent organization of: O |
SCR_011751 | Uppsala University, Uppsala Universitet | 2026-08-10 09:34:19 | 1 | |||||||||||
|
University of Tartu; Tartu; Estonia Resource Report Resource Website |
University of Tartu; Tartu; Estonia (RRID:SCR_011710) | UT | institution, university | University of Tartu is classical university in city of Tartu, Estonia. National university of Estonia. |
uses: DataCite is related to: PREDECT is related to: EMIF is parent organization of: Primer3 is parent organization of: Estonian Genome Center is parent organization of: BIIT - Bioinformatics Algorithmics and Data Mining Group is parent organization of: UNITE is parent organization of: REAPER is parent organization of: ClustVis |
nlx_49099 | SCR_011710 | Tartu Ulikool, University of Tartu, Tartu Ülikool | 2026-08-10 09:34:18 | 0 | |||||||||
|
University of Tennessee Health Science Center; Tennessee; USA Resource Report Resource Website 1+ mentions |
University of Tennessee Health Science Center; Tennessee; USA (RRID:SCR_011713) | UTHSC | institution, university |
has parent organization: University of Tennessee; Tennessee; USA is parent organization of: Mouse Brain Library is parent organization of: Chilibot: Gene and Protein relationships from MEDLINE is parent organization of: CTCFBSDB is parent organization of: GeneNetwork is parent organization of: PolymiRTS is parent organization of: GeneInfoViz is parent organization of: Mouse Genome Databases is parent organization of: nsSNPAnalyzer is parent organization of: GeneCup |
SCR_011713 | University of Tennessee Health Science Center, The University of Tennessee Health Science Center | 2026-08-10 09:34:18 | 2 | |||||||||||
|
University of Texas Health Science Center at Houston; Texas; USA Resource Report Resource Website 1+ mentions |
University of Texas Health Science Center at Houston; Texas; USA (RRID:SCR_011721) | UTHealth | institution, university |
is related to: Clinical and Translational Science Awards Consortium has parent organization: University of Texas System; Texas; USA is parent organization of: Comprehensive Drug Self-administration and Discrimination Bibliographic Databases is parent organization of: UTHealth BioBank is parent organization of: dbNSFP is parent organization of: UTHealth at Houston Neuroscience Research Center is parent organization of: Neuroscience Online: An Electronic Textbook for the Neurosciences is parent organization of: University of Texas Health Science Center Graduate School of Biomedical Sciences at Houston is parent organization of: UTHealth Laboratory for Developmental Biology is parent organization of: UTHealth Fluorescence Microscopy and Imaging Core Laboratory is parent organization of: UTHealth Houston Center for Advanced Microscopy Core Facility |
SCR_011721 | University of Texas Health Science Center at Houston, University of Texas Houston, The University of Texas Health Science Center at Houston, University of Texas at Houston | 2026-08-10 09:34:19 | 5 | |||||||||||
|
University of Texas Health Science Center Graduate School of Biomedical Sciences at Houston Resource Report Resource Website |
University of Texas Health Science Center Graduate School of Biomedical Sciences at Houston (RRID:SCR_011723) | institution, university | At theGraduate School of Biomedical Sciences, graduate training in Pharmacology is available in the following programs: Cell and Regulatory Biology Environmental and Molecular Carcinogenesis Genes and Development Each program has specific research opportunities in the area of Pharmacology as well as the research interests of the Program Faculty. A wide variety of factors (including its faculty, programmatic and curricular flexibility, financial aid package, facilities, and location) have led to a high ranking of GSBS in several surveys of graduate programs and research funding. | has parent organization: University of Texas Health Science Center at Houston; Texas; USA | nlx_90312 | SCR_011723 | UT Houston GSBS | 2026-08-10 09:34:19 | 0 | ||||||||||
|
LSID Web Resolver Resource Report Resource Website 10+ mentions |
LSID Web Resolver (RRID:SCR_009737) | data or information resource, database | A web based life sciences identifier (LSID) resolution service allows you to view the data and metadata of an LSID with a web browser. This service will display the metadata, formatted as a standard webpage, for any LSID. | nlx_156874 | SCR_009737 | 2026-08-10 09:33:47 | 12 | ||||||||||||
|
Manually Labeled MRI Brain Scan Database Resource Report Resource Website 1+ mentions |
Manually Labeled MRI Brain Scan Database (RRID:SCR_009604) | data or information resource, database | Collection of neuroanatomically labeled MRI brain scans, created by neuroanatomical experts. Regions of interest include the sub-cortical structures (thalamus, caudate, putamen, hippocampus, etc), along with ventricles, brain stem, cerebellum, and gray and white matter and sub-divided cortex into parcellation units that are defined by gyral and sulcal landmarks. | collection, neuroanatomical, MRI, brain, scan, data, thalamus, caudate, putamen, hippocampus, ventricle, cerebellum, cortex |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Neuromorphometrics works with: MRI Neuroanatomy Labeling Services works with: MRI Neuroanatomy Labeling Services |
NIMH R43 MH60507; NIMH R44 MH60507; NIMH R43 MH084358 |
Commercially available | nlx_155805 | http://www.nitrc.org/projects/manuallabels | SCR_009604 | 2026-08-10 09:33:49 | 1 | |||||||
|
Autism Genetic Database Resource Report Resource Website 1+ mentions |
Autism Genetic Database (RRID:SCR_010545) | AGD | data or information resource, database | The Autism Genetic Database currently contains the full list of autism susceptibility genes as well as all Copy Number Variations (CNVs) found to have a relationship to autism. Additionally, all noncoding RNA molecules (snoRNA, miRNA, and piRNA) and chemically induced fragile sites are stored as well. This information is currently accessible via an in-house human genome browser focusing specifically on the chromosomal features associated with autism, and in a tabular format broken down by chromosome. Genome Browser:A genome browser that displays the genes, CNVs, ncRNAs and fragile sites in an easily accessible graphical visualization tool Tabular Data Display:A tabular data display that allows the user to observe the chromosomal spatial relationship between the genes, CNVs, ncRNAs and fragile sites. This also provides links to Entrez and pubmed for each gene, as well as miRBase for miRNAs, snoRNA-LBME-db for snoRNAs, and piRNABank for piRNAs. | has parent organization: University of Kansas; Kansas; USA | Autism Speaks 01.4506; NICRR P20 RR0146475 |
PMID:19778453 | nlx_29034 | SCR_010545 | Autism Genetic Database: A comprehensive database for autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites | 2026-08-10 09:34:01 | 5 | |||||||
|
DaTo Resource Report Resource Website 10+ mentions |
DaTo (RRID:SCR_010280) | DaTo | data or information resource, database | A biological database and software tool catalog based on text mined and human annotated url mentions in PubMed abstracts. Data are annotated as to the author''''s country of origin and url status is checked. | metadata, catalog, text mining |
is related to: Cytoscape is related to: PubMed has parent organization: Zhejiang University; Zhejiang; China |
National Natural Science Foundation of China 30971743; National Natural Science Foundation of China 31371328 |
nlx_157296 | SCR_010280 | DA&TO - The Atlas of biology databases and tools, DAandTO, Da&To | 2026-08-10 09:33:59 | 12 | |||||||
|
CiteAb Resource Report Resource Website 50+ mentions |
CiteAb (RRID:SCR_009653) | CiteAb | data or information resource, database | Citation-ranked antibody search engine that provides a simple way to find antibodies that work. They use the number of citations as a transparent method to rank antibodies. Nobody can pay to be ranked higher. They are always looking for more commercial and academic antibodies to make CiteAb better. There is no charge to list. | antibody, search engine, citation |
is listed by: FORCE11 is related to: PubMed has parent organization: University of Bath; North East Somerset; United Kingdom |
Free, The community can contribute to this resource | nlx_156037 | http://www.force11.org/node/4768 | SCR_009653 | CiteAb: The Antibody Search Engine | 2026-08-10 09:33:50 | 55 | ||||||
|
Project Tycho Resource Report Resource Website 1+ mentions |
Project Tycho (RRID:SCR_010489) | data or information resource, database | Database to advance the availability and use of public health data for science and policy making that includes data from all weekly notifiable disease reports for the United States dating back to 1888. Additional U.S. and international data will be released twice yearly. | population, disease, metadata standard, vaccination, public health data, health, incidence rate, death, statistics | has parent organization: University of Pittsburgh; Pennsylvania; USA | Smallpox, Polio, Measles, Mumps, Rubella, Hepatitis A, Whooping cough, Diphtheria, Etc. | Bill and Melinda Gates Foundation ; NIH |
PMID:24283231 PMID:24611167 |
Account required, Creative Commons Attribution License | nlx_157982, r3d100011948 | SCR_010489 | Project Tycho Data for Health | 2026-08-10 09:34:00 | 3 | |||||
|
Search Orphan Drug Designations and Approvals Resource Report Resource Website 1+ mentions |
Search Orphan Drug Designations and Approvals (RRID:SCR_010256) | data or information resource, database | Database of Orphan Drug Product designations. Searches may be run by entering the product name, orphan designation, and dates. Results can be displayed as a condensed list, detailed list, or an Excel spreadsheet. | has parent organization: U.S. Food and Drug Administration | nlx_156908 | SCR_010256 | 2026-08-10 09:33:59 | 6 | |||||||||||
|
AnimalDrugsatFDA Resource Report Resource Website |
AnimalDrugsatFDA (RRID:SCR_010257) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database of approved veterinary drugs run by the FDA. | has parent organization: U.S. Food and Drug Administration | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156909 | SCR_010257 | animal drugs at FDA, animaldrugs@fda | 2026-08-10 09:33:57 | 0 | |||||||||
|
Genetic Alterations in Cancer Resource Report Resource Website |
Genetic Alterations in Cancer (RRID:SCR_010533) | GAC | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. The NIEHS Genetic Alterations in Cancer (GAC) knowledgebase is a comprehensive collection of data compiled from studies reported in the published literature on genetic alterations in tumors associated with exposure to specific chemical, physical, or biological agents that can be linked to genes implicated in the development of cancers. GAC provides access to data from peer reviewed journals for hundreds of studies of gene mutations, loss of heterozygosity, and/or chromosome changes in tumors from humans, mice, or rats. Results are summarized in tables and graphic profiles that show the incidence (percent) of tumors with alterations in each gene that has been studied. Detailed data tables display results for each subject studied in the cited reference and the reference ID is hyperlinked to its PubMed abstract for more information. A mutation spectrum for individual genes and links to gene information from The Cancer Genome Anatomy Project and the Rat Genome Database are also provided. | has parent organization: National Institute of Environmental Health Sciences | PMID:16410370 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_23898 | http://www.niehs.nih.gov/research/resources/databases/gac/index.cfm | SCR_010533 | 2026-08-10 09:34:01 | 0 | |||||||
|
Nomenclature for the description of sequence variants Resource Report Resource Website 100+ mentions |
Nomenclature for the description of sequence variants (RRID:SCR_010261) | MUTNOMEN | data or information resource, database | Database of gene mutation nomenclature. | has parent organization: Human Genome Variation Society | PMID:10612815 | nlx_156915 | SCR_010261 | 2026-08-10 09:33:59 | 460 | |||||||||
|
NetAge Database Resource Report Resource Website 1+ mentions |
NetAge Database (RRID:SCR_010224) | NetAge | data or information resource, database | Database that contains gene sets and microRNA-regulated protein-protein interaction networks for longevity, age-related diseases and aging-associated processes. | longevity, protein-protein interaction, mirna-regulated protein-protein interaction network, gene, protein, mirna, biogerontology | has parent organization: Ben-Gurion University of the Negev; Beer-Sheva; Israel | Age-related disease, Aging | PMID:20186480 | Acknowledgement requested, Public | nlx_156769 | SCR_010224 | 2026-08-10 09:33:59 | 6 | ||||||
|
SPIKE Resource Report Resource Website 100+ mentions |
SPIKE (RRID:SCR_010466) | SPIKE | data or information resource, database, service resource | Database of curated human signaling pathways with an associated interactive software tool for analysis and dynamic visualization of pathways. Individual pathway maps can be viewed and downloaded; the entire database may be browsed, or launched via a map viewer tool that allows dynamic visualization of the database and save networks in XGMML format that can be viewed in all generic XGMML viewers. Map Topics * Cell cycle progress and check points * DNA damage response * Programmed cell death related processes * Stress-activated transcription factors * Mitogen-activated protein kinase pathways * Immune response signaling * HEarSpike: hearing related pathways | visualization, analysis, cellular, signaling pathway, regulatory network, function, genomic, proteomic, cell cycle, dna damage, cell death, stress, transcription factor, mitogen, protein kinase, pathway, immune response, signaling, hearing, dna damage response, programmed cell death, development, ear, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian is related to: ConsensusPathDB has parent organization: Tel Aviv University; Ramat Aviv; Israel |
Cancer | A-T Children's Project ; Wolfson Foundation ; European Union FP7 ; Israel Science Foundation |
PMID:21097778 PMID:18289391 |
biotools:spike, nlx_157705 | https://bio.tools/spike | SCR_010466 | Signaling Pathway Integrated Knowledge Engine | 2026-08-10 09:34:00 | 131 | ||||
|
METLIN Resource Report Resource Website 1000+ mentions |
METLIN (RRID:SCR_010500) | METLIN | data or information resource, database | A public repository of metabolite information as well as tandem mass spectrometry data is provided to facilitate metabolomics experiments. It contains structures and represents a data management system designed to assist in a broad array of metabolite research and metabolite identification. An annotated list of known metabolites and their mass, chemical formula, and structure are available. Each metabolite is linked to outside resources for further reference and inquiry. MS/MS data is also available on many of the metabolites. | metabolite, tandem, mass spectrometry, metabolomics, mass, chemical formula, structure, FASEB list |
is listed by: NIDDK Information Network (dkNET) is related to: KEGG has parent organization: Scripps Research Institute |
PMID:16404815 | nlx_158116, r3d100012311 | SCR_010500 | Metabolite and Tandem MS Database (METLIN), METLIN Metabolite Database, Metabolite and Tandem MS Database | 2026-08-10 09:34:00 | 2825 |
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