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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Mouse_abi_tool Resource Report Resource Website 1+ mentions |
Mouse_abi_tool (RRID:SCR_023831) | source code, software resource | Software tool to pull gene expression from Allen Brain Institute API in same annotation space as structural connectome. | Mouse Brain Atlas, gene expression data, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023831 | 2026-08-09 09:08:19 | 1 | ||||||||||
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GS-EM Resource Report Resource Website |
GS-EM (RRID:SCR_003992) | GS-EM | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154366 | SCR_003992 | GenoSpectrum Expectation-Maximuzation | 2026-08-09 09:03:59 | 0 | ||||||||
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NIH Toolbox 4-Meter Walk Gait Speed Test Resource Report Resource Website |
NIH Toolbox 4-Meter Walk Gait Speed Test (RRID:SCR_003632) | assessment test provider, material resource | Assessment test to measure gait speed where participants are asked to walk a short distance (4 meters) at their usual pace. Participants complete one practice and then two timed trials. Raw scores are recorded as the time in seconds required to walk 4 meters on each of the two trials, with the better trial used for scoring. The 4-Meter Walk Gait Speed Test is adapted from the 4-meter walk test in the Short Physical Performance Battery. The test takes approximately 3 minutes to administer (including instructions and practice). This test is recommended for ages 7-85. | motor, locomotion, gait, speed | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157782 | SCR_003632 | 4-Meter Walk Gait Speed Test | 2026-08-09 09:03:51 | 0 | |||||||||
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Pharmacological Imaging and Pattern Recognition toolbox Resource Report Resource Website |
Pharmacological Imaging and Pattern Recognition toolbox (RRID:SCR_003874) | PIPR | software toolkit, software resource | Software toolbox designed to provide machine learning methods for pre-processed imaging data allowing for two (or more) class classification in the context of drug development. The Toolbox includes implementations of Gaussian Process Classification, Support Vector Machines, Ordinal Regression and Sparse Multinomial Logistic Regression for fMRI, Structural and ASL imaging data. | fmri, neuroimaging, analysis, brain image, classification, drug development, mri, asl |
has parent organization: NEWMEDS has parent organization: King's College London; London; United Kingdom |
nlx_158199 | SCR_003874 | Pharmacological Imaging and Pattern Recognition | 2026-08-09 09:03:48 | 0 | ||||||||
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NIH Toolbox 2-Minute Walk Endurance Test Resource Report Resource Website |
NIH Toolbox 2-Minute Walk Endurance Test (RRID:SCR_003631) | assessment test provider, material resource | Assessment test that measures sub-maximal cardiovascular endurance by recording the distance that the participant is able to walk on a 50-foot (out and back) course in 2 minutes. The participant's raw score is the distance in feet and inches walked in 2 minutes. The test is adapted from the American Thoracic Society's 6-Minute Walk Test Protocol. The test overall takes approximately 4 minutes to administer (with instructions and practice). This test is recommended for ages 3-85. | motor, endurance, cardiovascular | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157781 | SCR_003631 | 2-Minute Walk Endurance Test | 2026-08-09 09:03:46 | 0 | |||||||||
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NIH Toolbox Standing Balance Test Resource Report Resource Website |
NIH Toolbox Standing Balance Test (RRID:SCR_003628) | assessment test provider, material resource | A measure to assess static standing balance that involves the participant assuming and maintaining up to 5 poses for 50 seconds each. The sequence of poses is: eyes open on a solid surface, eyes closed on solid surface, eyes open on foam surface, eyes closed on foam surface, eyes open in tandem stance. Detailed stopping rules are in place to ensure participant safety with these progressively demanding poses. Postural sway is recorded for each pose using an accelerometer that the participant wears at waist level. This test takes approximately 7 minutes to administer and is recommended for ages 3-85. | motor, balance | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157779 | SCR_003628 | Standing Balance Test | 2026-08-09 09:03:51 | 0 | |||||||||
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Template-O-Matic Toolbox Resource Report Resource Website 10+ mentions |
Template-O-Matic Toolbox (RRID:SCR_003220) | TOM Toolbox, TOM | software toolkit, software resource | Software toolbox for creating customized pediatric templates. It provides reference data based on imaging data from the NIH study of normal brain development. Using the general linear model, they statistically isolate the influence of external variables of interest on brain structure, allowing us to generate high-quality matched templates for any given group of subjects. The toolbox offers two options: # to create pediatric templates (T1) and tissue maps (GM, WM, and CSF) based on the objective 1 NIH data (n = 404), in the age range of 5-18 years, or # to assess a new reference population with regard to your variables of interest. Of note, this approach is generally applicable and in no way restricted to analyzing pediatric imaging data: for example, if you aim at investigating the effects of aging in elderly subjects, the toolbox will also allow you to create more appropriate reference (if your group is large enough to isolate such effects). | reference, pediatric, neuroimaging, template | PMID:18424084 | Free, Available for download, Freely available | nlx_157256 | http://dbm.neuro.uni-jena.de/software/tom/ | SCR_003220 | Template-O-Matic | 2026-08-09 09:03:42 | 12 | ||||||
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NIH Toolbox Oral Reading Recognition Test Resource Report Resource Website |
NIH Toolbox Oral Reading Recognition Test (RRID:SCR_003622) | assessment test provider, material resource | Assessment test that measures the ability of patients to identify words and letters. The participant is asked to read and pronounce letters and words as accurately as possible. The test administrator scores them as right or wrong. For the youngest children, the initial items require them to identify letters (as opposed to symbols) and to identify a specific letter in an array of 4 symbols. The test is given in a computerized adaptive format and requires approximately 3 minutes. This test is recommended for ages 7-85, but is available for use as young as age 3, if requested. Separate but parallel reading tests have been developed in English and in Spanish. | cognition, language | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157774 | SCR_003622 | Oral Reading Recognition Test | 2026-08-09 09:03:46 | 0 | |||||||||
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ProLinks Database of Functional Linkages Resource Report Resource Website |
ProLinks Database of Functional Linkages (RRID:SCR_003185) | software toolkit, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented July 7, 2017. Collection of inference methods used to predict functional linkages between proteins. These methods include the Phylogenetic Profile method which uses the presence and absence of proteins across multiple genomes to detect functional linkages; the Gene Cluster method which uses genome proximity to predict functional linkage; Rosetta Stone which uses a gene fusion event in a second organism to infer functional relatedness; and the Gene Neighbor method which uses both gene proximity and phylogenetic distribution to infer linkage. | functional linkage, protein linkage, inference method |
is listed by: OMICtools has parent organization: University of California at Los Angeles; California; USA |
PMID:15128449 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00580 | http://prl.mbi.ucla.edu/prlbeta/prolinks.jsp http://dip.mbi.ucla.edu/dipbeta/prolinks.jsp | SCR_003185 | Prolinks | 2026-08-09 09:03:42 | 0 | ||||||
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Advanced Neuroscience Imaging Research Laboratory Software Packages Resource Report Resource Website 10+ mentions |
Advanced Neuroscience Imaging Research Laboratory Software Packages (RRID:SCR_002926) | ANSIR Software | software toolkit, software resource | Research group based in the Department of Radiology of Wake Forest University School of Medicine devoted to the application of novel image analysis methods to research studies. The ANSIR lab also maintains a fully-automated functional and structural image processing pipeline supporting the image storage and analysis needs of a variety of scientists and imaging studies at Wake Forest. Software packages and toolkits are currently available for download from the ANSIR Laboratory, including: WFU Biological Parametric Mapping Toolbox, WFU_PickAtlas, and Adaptive Staircase Procedure for E-Prime. | multimodal, image, analysis, biological, parametric, mapping, voxel, linear, model, regressor, software, matlab, visualization, statistical, inference, in vivo, brain imaging, brain | has parent organization: Wake Forest School of Medicine; North Carolina; USA | NIBIB R01EB004673; NIBIB 1R03EB008670 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30033 | SCR_002926 | Advanced Neuroscience Imaging Research Software, ANSIR Laboratory Software Packages | 2026-08-09 09:03:39 | 38 | ||||||
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NIH Toolbox Picture Sequence Memory Test Resource Report Resource Website |
NIH Toolbox Picture Sequence Memory Test (RRID:SCR_003618) | Picture Sequence Memory Test | assessment test provider, material resource | A measure for the assessment of episodic memory that involves recalling increasingly lengthy series of illustrated objects and activities that are presented in a particular order on the computer screen. The participants are asked to recall the sequence of pictures that is demonstrated over two learning trials; sequence length varies from 6-18 pictures, depending on age. Participants are given credit for each adjacent pair of pictures (i.e., if pictures in locations 7 and 8 and placed in that order and adjacent to each other anywhere such as slots 1 and 2 one point is awarded) they correctly place, up to the maximum value for the sequence, which is one less than the sequence length (if there are 18 pictures in the sequence, the maximum score is 17, because that is the number of adjacent pairs of pictures that exist). The test takes approximately 7 minutes to administer. This test is recommended for ages 3-85. | cognition, episodic memory, memory |
is related to: NIH Toolbox Auditory Verbal Learning Test (Rey) has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function |
nlx_157771 | SCR_003618 | 2026-08-09 09:03:51 | 0 | |||||||||
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NIH Toolbox Flanker Inhibitory Control and Attention Test Resource Report Resource Website 1+ mentions |
NIH Toolbox Flanker Inhibitory Control and Attention Test (RRID:SCR_003617) | Flanker task | assessment test provider, material resource | Assessment test that measures both a participant''s attention and inhibitory control. The test requires the participant to focus on a given stimulus while inhibiting attention to stimuli (fish for ages 3-7 or arrows for ages 8-85) flanking it. Sometimes the middle stimulus is pointing in the same direction as the flankers (congruent) and sometimes in the opposite direction (incongruent). Scoring is based on a combination of accuracy and reaction time, and the test takes approximately 3 minutes to administer. This test is recommended for ages 3-85. | cognition, attention, executive function, inhibitory control | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157770 | SCR_003617 | Flanker Inhibitory Control and Attention Test | 2026-08-09 09:03:46 | 1 | ||||||||
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NIH Toolbox Dimensional Change Card Sort Test Resource Report Resource Website 1+ mentions |
NIH Toolbox Dimensional Change Card Sort Test (RRID:SCR_003616) | DCCS | assessment test provider, material resource | Assessment test that measures the cognitive flexibility of patients. Two target pictures are presented that vary along two dimensions (e.g., shape and color). Participants are asked to match a series of bivalent test pictures (e.g., yellow balls and blue trucks) to the target pictures, first according to one dimension (e.g., color) and then, after a number of trials, according to the other dimension (e.g., shape). Switch trials are also employed, in which the participant must change the dimension being matched. For example, after 4 straight trials matching on shape, the participant may be asked to match on color on the next trial and then go back to shape, thus requiring the cognitive flexibility to quickly choose the correct stimulus. Scoring is based on a combination of accuracy and reaction time, and the test takes approximately 4 minutes to administer. This test is recommended for ages 3-85. | cognitive flexibility, cognition, executive function | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157769 | SCR_003616 | 2026-08-09 09:03:45 | 2 | |||||||||
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CERAD - Consortium to Establish a Registry for Alzheimer's Disease Resource Report Resource Website 1000+ mentions |
CERAD - Consortium to Establish a Registry for Alzheimer's Disease (RRID:SCR_003016) | CERAD | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 4, 2023.Consortium that developed brief, standardized and reliable procedures for the evaluation and diagnosis of patients with Alzheimer's disease (AD) and other dementias of the elderly. These procedures included data forms, flipbooks, guidebooks, brochures, instruction manuals and demonstration tapes, which are now available for purchase. The CERAD assessment material can be used for research purposes as well as for patient care. CERAD has developed several basic standardized instruments, each consisting of brief forms designed to gather data on normal persons as well as on cognitively impaired or behaviorally disturbed individuals. Such data permit the identification of dementia based on clinical, neuropsychological, behavioral or neuropathological criteria. Staff at participating CERAD sites were trained and certified to administer the assessment instruments and to evaluate the subjects enrolled in the study. Cases and controls were evaluated at entry and annually thereafter including (when possible) autopsy examination of the brain to track the natural progression of AD and to obtain neuropathological confirmation of the clinical diagnosis. The CERAD database has become a major resource for research in Alzheimer's disease. It contains longitudinal data for periods as long as seven years on the natural progression of the disorder as well as information on clinical and neuropsychological changes and neuropathological manifestations., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | clinical, behavior, late adult human, male, female, caucasian, african-american, autopsy, longitudinal, neuropsychology, neuropathology, FASEB list | has parent organization: Duke University; North Carolina; USA | Aging, Alzheimer's disease, Dementia, Cognitive impairment, Neurodegenerative disorder, Systemic illness, Cerebrovascular disease, Parkinson's disease, Depressive Disorder | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00523 | SCR_003016 | Consortium to Establish a Registry for Alzheimer's Disease | 2026-08-09 09:03:40 | 2337 | |||||
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AltAnalyze - Alternative Splicing Analysis Tool Resource Report Resource Website 50+ mentions |
AltAnalyze - Alternative Splicing Analysis Tool (RRID:SCR_002951) | AltAnalyze | software application, software resource | Software application for microarry, RNA-Seq and metabolomics analysis. For splicing sensitive platforms (RNA-Seq or Affymetrix Exon, Gene and Junction arrays), it will assess alternative exon (known and novel) expression along protein isoforms, domain composition and microRNA targeting. In addition to splicing-sensitive platforms, it provides comprehensive methods for the analysis of other data (RMA summarization, batch-effect removal, QC, statistics, annotation, clustering, network creation, lineage characterization, alternative exon visualization, gene-set enrichement and more). AltAnalyze can be run through an intuitive graphical user interface or command-line and requires no advanced knowledge of bioinformatics programs or scripting. Alternative regulated exons can be subsequently visualized in the context of proteins, domains and microRNA binding sites with the Cytoscape Plugin DomainGraph. | analysis, alternative splicing, microarray, calculate, pathway, ontology, domain, microrna, targeting, splicing, microarry, rna-seq, metabolomics, mac osx, windows, ubuntu, cross platform, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Cytoscape has parent organization: University of California at San Francisco; California; USA |
PMID:20513647 | Free, Available for download, Freely available | nif-0000-30083, OMICS_02250, biotools:altanalyze | https://bio.tools/altanalyze | SCR_002951 | Alternative Splicing Analysis Tool | 2026-08-09 09:03:37 | 86 | |||||
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Colorado Assessment Tests - Symptom Validity Resource Report Resource Website |
Colorado Assessment Tests - Symptom Validity (RRID:SCR_003520) | CAT Symptom Validity | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. Memory impairment is one of the most common complaints after head injury, and accordingly, individuals may attempt to feign memory impairment or exaggerate symptoms of memory impairment. This free neuropsychological evaluation software contains some of the most common tests used to detect malingering of memory impairment. This software package contains a number of tests of declarative memory that assess recall of information that has a personal and temporal context. The typical example of declarative tests used for detecting malingering are the auditory verbal learning test and forced choice test. These tests are included in Symptom Validity along with other tests of declarative memory (e.g., prose recall, questionnaire tests). Unfortunately, classification of individuals is not completely accurate even with the use of multiple declarative memory tests. Thus, other tests that can complement previously used declarative memory measures by enhancing classification accuracy may be of great value to the neuropsychologist assessing the possibility of malingering. Your software contains two tests of nondeclarative memory that have been previously shown to be useful in the detection of malingered memory deficits (Davis et al., 1997a, 1997b). These tests take advantage of the general laypersons misunderstanding of the test performance of a truly memory impaired individual. That is, amnesic patients have been shown to perform normally on these nondeclarative memory tests and this is counterintuitive to the memory performance expectations of the general layperson. The nondeclarative tests included in Symptom Validity are two repetition priming tests of word stem completion and two tests of pattern categorization learning. Note: At this time this program will run only on Windows 98. We are currently working on a version that will run under the newer operating systems. | auditory verbal learning test, craniocerebral trauma, declarative memory, disfunctional, human, memory, memory impairment, memory recall, neuropsychological assessment, nondeclarative memory, prose recall | has parent organization: University of Colorado; Colorado Springs; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00213 | SCR_003520 | Symptom Validity | 2026-08-09 09:03:45 | 0 | |||||||
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NIH Toolbox Regional Taste Intensity Test Resource Report Resource Website |
NIH Toolbox Regional Taste Intensity Test (RRID:SCR_003637) | assessment test provider, material resource | Assessment test that measures the perceived intensity of quinine (a bitter tastant) and salt administered in liquid solutions. The tastants are applied to the tip of the tongue as well as the whole mouth and rated on a generalized labeled magnitude scale (ranging from no sensation at all to strongest sensation of any kind). The test is recommended for administration to participants ages 12-85 and takes approximately six minutes to administer. | sensation, taste, quinine, salt | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157788 | SCR_003637 | Regional Taste Intensity Test | 2026-08-09 09:03:46 | 0 | |||||||||
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NIH Toolbox Pain Intensity Survey Resource Report Resource Website |
NIH Toolbox Pain Intensity Survey (RRID:SCR_003636) | assessment test provider, material resource | A measure that consists of a single item measuring immediate (i.e., acute) pain in adults. As part of Toolbox, a single pain intensity item measures immediate (a.k.a. acute) pain for use in adults. It takes less than one minute to administer and is recommended for ages 18-85. | sensation, pain, adult human | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157787 | SCR_003636 | Pain Intensity Survey | 2026-08-09 09:03:45 | 0 | |||||||||
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NIH Toolbox Pain Interference Survey Resource Report Resource Website |
NIH Toolbox Pain Interference Survey (RRID:SCR_003635) | assessment test provider, material resource | A self-report scale that measures the degree to which pain interferes with other activities in life in adults. Pain interference items were developed as part of the NIH PROMIS. This measure is administered as a computer-adaptive test and takes approximately three minutes. It is recommended for ages 8-85. | sensation, pain | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157786 | SCR_003635 | Pain Interference Survey | 2026-08-09 09:03:51 | 0 | |||||||||
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NIH Toolbox Odor Identification Test Resource Report Resource Website |
NIH Toolbox Odor Identification Test (RRID:SCR_003634) | assessment test provider, material resource | Assessment test to assess a person's ability to identify various odors. Participants use scratch 'n' sniff cards and after scratching them one at a time, are asked to identify which of four pictures on the computer screen matches the odor they have just smelled. Participants ages 10-85 are administered nine odor cards, while those ages 3-9 are administered five odor cards. Child participants (ages 3 -9 years) are first asked to identify the eight pictures that are used as answer choices, to ensure they can complete the task. Having identified the pictures, they are asked if they have tasted or smelled the objects or foods depicted. This test takes approximately 4 to 5 minutes to administer and is recommended for ages 3-85. | sensation, olfaction, odor, smell | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | nlx_157785 | SCR_003634 | Odor Identification Test | 2026-08-09 09:03:46 | 0 |
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