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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Human Physiology Simulation Ontology Resource Report Resource Website |
Human Physiology Simulation Ontology (RRID:SCR_010340) | HUPSON | data or information resource, controlled vocabulary, ontology | Ontology as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles. | owl | is listed by: BioPortal | nlx_157434 | SCR_010340 | 2026-08-09 09:05:35 | 0 | |||||||||
|
Logical Observation Identifier Names and Codes Resource Report Resource Website 1+ mentions |
Logical Observation Identifier Names and Codes (RRID:SCR_010341) | LOINC | data or information resource, controlled vocabulary, ontology | Ontology of logical observation identifier names and codes (LOINC); Version 2.26; January 2, 2009 | umls | is listed by: BioPortal | nlx_157460 | SCR_010341 | 2026-08-09 09:05:20 | 1 | |||||||||
|
Reproductive Trait and Phenotype Ontology Resource Report Resource Website |
Reproductive Trait and Phenotype Ontology (RRID:SCR_006245) | REPO | data or information resource, controlled vocabulary, ontology | Ontology for livestock reproductive traits and phenotypes | owl | is listed by: BioPortal | nlx_157574 | SCR_006245 | 2026-08-09 09:04:24 | 0 | |||||||||
|
DICOM Controlled Terminology Resource Report Resource Website |
DICOM Controlled Terminology (RRID:SCR_010302) | DCM | data or information resource, controlled vocabulary, ontology | DICOM Controlled Terminology (PS3.16 2013 Annex D) | owl | is listed by: BioPortal | nlx_157381 | SCR_010302 | 2026-08-09 09:05:19 | 0 | |||||||||
|
Diagnostic Ontology Resource Report Resource Website |
Diagnostic Ontology (RRID:SCR_010307) | DIAGONT | data or information resource, controlled vocabulary, ontology | A computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for diagnostic studies, that will assist in standardized reporting of diagnostic articles. They also report high percentage of agreement among five observers as a result of the inter-observer agreement that they conducted among them to tag 13 articles using the diagnostic ontology. Moreover, they extend their existing repository CERR-N (Center of Excellence in Research Reporting in Neurosurgery) to include diagnostic studies. | owl | is listed by: BioPortal | nlx_157386 | SCR_010307 | 2026-08-09 09:05:35 | 0 | |||||||||
|
BioPortal Metadata Ontology Resource Report Resource Website |
BioPortal Metadata Ontology (RRID:SCR_010167) | BP-METADATA | data or information resource, controlled vocabulary, ontology | Ontology that represents the structure that BioPortal uses to represent all of its metadata (ontology details, mappings, notes, reviews, views) | owl |
is listed by: BioPortal is related to: Provisional Cell Ontology |
nlx_157328 | http://www.bioontology.org/wiki/index.php/BioPortal_Metadata | SCR_010167 | 2026-08-09 09:05:26 | 0 | ||||||||
|
Is the Brain (Like) a Computer Resource Report Resource Website |
Is the Brain (Like) a Computer (RRID:SCR_008809) | Is the Brain (Like) a Computer | data or information resource, book, narrative resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. Is the Brain (Like) a Computer is an e-book written by Prof. Mark Dubin. It consists of the following: Introduction. Why do we consider the relationship of brains and computers and what does this have to do with consciousness? What's a Brain Made Of? A thought experiment. Test Drive a Turing Machine. A theoretical approach. Interim Summary. Many of the main pages have links to additional information. When you click on one of those links a NEW page will open ON TOP of the page you are clicking from. This convention is adopted so that you can look at the additional information and then easily return to the main page you got there from. | brain, human, image | has parent organization: University of Colorado; Colorado; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144392 | SCR_008809 | Is the Brain Like a Computer?, Is the Brain Like a Computer | 2026-08-09 09:04:54 | 0 | |||||||
|
Translational Medicine Ontology Resource Report Resource Website |
Translational Medicine Ontology (RRID:SCR_010439) | TMO | data or information resource, controlled vocabulary, ontology | A high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research, hypothesis management, experimental studies, compounds, formulation, drug development, market size, competitive data, population data, etc. to be brought together. This would enable scientists to answer new questions, and to answer existing scientific questions more quickly. This will help pharmaceutical companies to model patient-centric information, which is essential for the tailoring of drugs, and for early detection of compounds that may have sub-optimal safety profiles. The ontology should link to existing publicly available domain ontologies. | owl | is listed by: BioPortal | nlx_157616 | SCR_010439 | 2026-08-09 09:05:37 | 0 | |||||||||
|
Neuron Phenotype Ontology Resource Report Resource Website 1+ mentions |
Neuron Phenotype Ontology (RRID:SCR_017403) | NPO | data or information resource, controlled vocabulary, ontology | An ontology for describing the complex phenotypes of neurons. | Cell, type, phenotype, neuron, ontology |
is used by: BICCN is provided by: NIFSTD |
NIMH U24 MH114827; BRAIN Initiative |
Free, Freely available | SCR_017403 | 2026-08-09 09:07:04 | 2 | ||||||||
|
alpha helix coordinate frame simulation Resource Report Resource Website 1+ mentions |
alpha helix coordinate frame simulation (RRID:SCR_019320) | source code, software resource | Source code for alpha-helix simulation framework written in Matlab. Specifically tested on Talin-1 Rod Domain. | talin-1 (human), MATLAB, alpha-helix, simulation framework | is related to: MATLAB | Free, Available for download, Freely available | SCR_019320 | alpha-helix-coordinate-frame-simulation, alpha-helix coordinate frame simulation framework | 2026-08-09 09:07:51 | 1 | |||||||||
|
linear actuator Resource Report Resource Website |
linear actuator (RRID:SCR_021613) | source code, software resource | Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system. | Pearce Lab Syringe Pump, OpenBehavior |
is listed by: OpenBehavior is related to: Pearce Lab Syringe Pump project |
DOI:10.1371/journal.pone.0107216 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/syringe-pump/ | SCR_021613 | linear-actuator | 2026-08-09 09:08:11 | 0 | |||||||
|
Rodent Operant Bucket Resource Report Resource Website |
Rodent Operant Bucket (RRID:SCR_021610) | source code, software resource | Software tool as ROBucket source code. | ROBucket, OpenBehavior |
is listed by: OpenBehavior is related to: Rodent Operant Bucket project |
DOI:10.3758/s13428-015-0603-2 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/robucket/ | SCR_021610 | 2026-08-09 09:08:02 | 0 | ||||||||
|
chendoscope Resource Report Resource Website |
chendoscope (RRID:SCR_021616) | source code, software resource | Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems. | Acquisition software, CHEndoscope Ximea USB camera, OpenBehavior |
is listed by: OpenBehavior is related to: CHEndoscope |
DOI:10.1002/cpns.51 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/chendoscope/ | SCR_021616 | 2026-08-09 09:08:02 | 0 | ||||||||
|
AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | source code, software resource | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | 2026-08-09 09:08:12 | 0 | ||||||||
|
Meta-Prism Resource Report Resource Website 1+ mentions |
Meta-Prism (RRID:SCR_021836) | source code, software resource | Software tool as microbial community sample search method based on smart pair wise sample comparison without compromising accuracy. Used as microbial communities similarites calculation and comparison tool. | microbial community sample search, sample comparison, microbial communities similarites calculation | Free, Available for download, Freely available | SCR_021836 | Meta-Prism 2.0 | 2026-08-09 09:07:43 | 3 | ||||||||||
|
Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | source code, software resource | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | 2026-08-09 09:08:11 | 0 | ||||||||
|
Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | source code, software resource | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | 2026-08-09 09:08:09 | 0 | ||||||||
|
naturalsounds analysis Resource Report Resource Website |
naturalsounds analysis (RRID:SCR_021793) | source code, software resource | Software tool as source code for analyzing functional ultrasound data. | analyzing functional ultrasound data | Free, Available for download, Freely available | https://zenodo.org/record/5493682#.YYCTbp7MJPY | SCR_021793 | naturalsounds_analysis | 2026-08-09 09:07:42 | 0 | |||||||||
|
flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | source code, software resource | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | 2026-08-09 09:08:08 | 1 | ||||||||
|
sepsis3-amsterdamumcdb Resource Report Resource Website 1+ mentions |
sepsis3-amsterdamumcdb (RRID:SCR_022042) | source code, software resource | Repository contains files for implementing the Sepsis-3 definition in the freely-accessible Amsterdam University Medical Centers Database. | Sepsis-3 criteria, Amsterdam University Medical Centers Database | Restricted | SCR_022042 | Sepsis-3 in AmsterdamUMCdb | 2026-08-09 09:08:09 | 2 |
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