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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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HUMAnN Resource Report Resource Website 500+ mentions |
HUMAnN (RRID:SCR_014620) | data processing software, software application, software resource, workflow software | A pipeline which takes short DNA/RNA reads as inputs and produces gene and pathway summaries as outputs. The pipeline converts sequence reads into coverage and abundance tables summarizing the gene families and pathways in one or more microbial communities. | microbiome, dna reads, rna reads, workflow software, pipeline | is listed by: Human Microbiome Project | SCR_014620 | SciCrunch Registry | HMP Unified Metabolic Analysis Network (HUMAnN), HMP Unified Metabolic Analysis Network | 2026-10-10 12:39:22 | 507 | ||||||||||
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HDD Access Resource Report Resource Website |
HDD Access (RRID:SCR_014581) | HDD | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Database built up with software and services that maintains multiple versions of terminologies, map sets, and values sets concurrently. HDD Access has superseded Concept Hub. | database, terminology, healthcare, biomedical, data dictionary, concept hub | is related to: Concept Hub | Commercial | nif-0000-33434 | SCR_014581 | SciCrunch Registry | 3M HDD Access, 3M Healthcare Data Dictionary | 2026-10-10 12:39:28 | 0 | |||||||
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FluorChem Q Imager Resource Report Resource Website 100+ mentions |
FluorChem Q Imager (RRID:SCR_014549) | data analysis software, data processing software, data visualization software, software application, software resource | A software used for quantitative Western blot imaging and analysis. This software is compatible with several dyes and kits, providing extra flexibility for application. This software is designed to be able to look at multiple proteins simultaneously on a single assay. This software is sensitive enough to distinguish co-migrating proteins, such as phosphorylated and unphosphorylated isoforms. | western blot, western blot analysis, co-migrating proteins, single assay, phosphorylated, unphosphorylated, isoforms, | Commercial | SCR_014549 | SciCrunch Registry | 2026-10-10 12:39:50 | 113 | |||||||||||
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Olympus cellSens Software Resource Report Resource Website 1000+ mentions Rating or validation data |
Olympus cellSens Software (RRID:SCR_014551) | data acquisition software, data processing software, image acquisition software, image analysis software, software application, software resource, software toolkit | Software suite for image acquisition and analysis. The software can be paired with high-quality cameras to maximize output quality and export it for sharing and research applications. | image, analysis, record, video, research, optimize, processing, acquisition, camera, Olympus | Restricted | SCR_016238, SCR_018869 | SCR_014551 | SciCrunch Registry | Olympus CellSens Imaging software, Olympus cellSens Dimension | 2026-10-10 12:39:20 | 3045 | |||||||||
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CRAIG H. NEILSEN FOUNDATION Resource Report Resource Website 10+ mentions |
CRAIG H. NEILSEN FOUNDATION (RRID:SCR_014552) | CHN | institution | A non-profit organization that awards grants to a broad spectrum of charities, including those that benefit spinal cord injury efforts. The Foundation is primarily dedicated to funding extensive research, education and quality of life programs for improving the lives of people affected by spinal cord injury. | spinal cord, Paralysis, spinal cord injury | Crossref funder ID: 100005191, grid.428355.d | https://ror.org/00k0a6x92 | SCR_014552 | SciCrunch Registry | CRAIG NEILSEN FOUNDATION, NEILSEN FOUNDATION | 2026-10-10 12:39:31 | 12 | ||||||||
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ELIXIR Tools and Data Services Registry Resource Report Resource Website 10+ mentions |
ELIXIR Tools and Data Services Registry (RRID:SCR_014556) | data or information resource, portal, topical portal | Elixir Interoperability Platform to help people and machines to discover, access, integrate and analyse biological data. Encourages life science community to adopt standardized file formats, metadata, vocabularies and identifiers and works internationally to achieve its goals. Bioinformatics resource registry that provides scientific and technical information about analytical tools and data services for bioinformatics. Gateway to databases and tools for life science data analysis.Provides comprehensive and up-to-date catalogue of resources that are interactive and downloadable, and that offer programmatic access. The registry also allows the community to upload their own resources to the registry following a simple log in procedure. | bioinformatics, data service registry, tool registry, resource registry, registry |
lists: gProfiler2 lists: Galactic Circos lists: bio.tools is affiliated with: bio.tools is related to: FAIRsharing is related to: Laniakea |
Free, Freely available | SCR_014556 | SciCrunch Registry | European Infrastructure for Biological Information Tools | 2026-10-10 12:39:27 | 21 | |||||||||
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UCSF Brain and Spinal Injury Center (UCSF-BASIC) Resource Report Resource Website |
UCSF Brain and Spinal Injury Center (UCSF-BASIC) (RRID:SCR_014553) | group | A center that conducts basic science and clinical research concerning spinal cord injury located at both the University of California San Francisco and the Zuckerberg San Francisco General Hospital. | spinal cord injury, traumatic brain injury, paralysis, neuroprotection, regeneration, clinical trials, translational research, syndromics | SCR_014553 | SciCrunch Registry | 2026-10-10 12:39:50 | 0 | ||||||||||||
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BioBlend Library Resource Report Resource Website 1+ mentions |
BioBlend Library (RRID:SCR_014557) | software library, software resource, software toolkit | A Python library which provides Python access to and interaction with Galaxy's API and CloudMan. The library allows users to create a CloudMan compute cluster via an API and directly from a local machine, reconnect to an existing CloudMan instance and manipulate it, and interact with Galaxy via a straightforward API and an object-oriented API. The library itself can be used with either service irrespective of the other. | python, library, cloudman, api, galaxy | is hosted by: GitHub | Available for download | SCR_014557 | SciCrunch Registry | BioBlend | 2026-10-10 12:39:20 | 8 | |||||||||
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LINUCS Resource Report Resource Website |
LINUCS (RRID:SCR_001571) | LINUCS | analysis service resource, data analysis service, production service resource, service resource, software resource, source code | Service that directly converts the commonly used extended representation of complex carbohydrates into the preferred canonical description or into its inverted form. Input: A structure using the extended, non-graphic nomenclature (in ASCII writing) to describe complex carbohydrates as recommended by IUPAC. Output: A linear, unique notation. The source code (written in C), will be distributed so that software developers can easily implement their algorithm within their own application. LINUCS was chosen to fulfill to following conditions: * Input of extended, non-graphic nomenclature to describe carbohydrate structures. * Resulting linear code is closely related to notations and abbreviations recommended by IUPAC. * Number of additional rules to define the priority of the branches is low * Extended nomenclature of complex carbohydrates contains all information to define the hierarchy. * LINUCS is applicable to all types of carbohydrates (macrocyclic system are currently not implemented) . * Remaining unassigned linkage information are tolerated | carbohydrate, notation, structure, carbohydrate sequence, canonical description, glycodatabase, glycobioinformatics, algorithm, molecule, sequence |
is related to: sumo is related to: pdb2linucs has parent organization: glycosciences.de |
PMID:11675023 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152883 | SCR_001571 | SciCrunch Registry | LINUCS: LInear Notation for Unique description of Carbohydrate Sequences, LInear Notation for Unique description of Carbohydrate Sequences | 2026-10-10 12:41:37 | 0 | ||||||
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Fujifilm: Vevo 3100 Imaging System Resource Report Resource Website 1+ mentions |
Fujifilm: Vevo 3100 Imaging System (RRID:SCR_022152) | Vevo 3100 | instrument resource | Vevo 3100 micro ultrasound imaging system reduces speckle noise and artifacts while preserving and enhancing critical information for small animal in vivo studies. System helps you visualize your data at high resolution. | Ultrasound, FUJIFILM Visualsonics, Inc., ultrasound imaging system, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_022152 | SciCrunch Registry | Vevo 3100 micro ultrasound imaging system | 2026-10-10 12:41:35 | 9 | ||||||||
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Mathematical Modelling Ontology Resource Report Resource Website |
Mathematical Modelling Ontology (RRID:SCR_000910) | MAMO | controlled vocabulary, data or information resource, ontology | Ontology that is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. | owl | is listed by: BioPortal | nlx_157467 | SCR_000910 | SciCrunch Registry | 2026-10-10 12:41:37 | 0 | |||||||||
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Interactome Wiki Resource Report Resource Website |
Interactome Wiki (RRID:SCR_000750) | data or information resource, narrative resource, wiki | This Wiki page provides information about Interactome of various species. An interactome of a species provides an important clues on how to interpret metabolic pathways of constituent enzymes and global protein network, which facilitates in turn to understand the mechanism responsible for the cellular functions. | enzyme, function, animal, bacterial, cellular, interactome, mechanism, metabolic, pathway, plant, protein, species | nif-0000-10260 | SCR_000750 | SciCrunch Registry | Interactome | 2026-10-10 12:42:04 | 0 | ||||||||||
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National Microbiome Data Collaborative Resource Report Resource Website 1+ mentions |
National Microbiome Data Collaborative (RRID:SCR_022161) | NMDC | data or information resource, portal, topical portal | Platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. Multi organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and environment. Founded to support long term advancement of microbiome science. | Microbiome data exploration and discovery, microbiome data, microbiome data science ecosystem, microbiome data, microbiome data discovery portal, FAIR, FAIRsharing | Free, Freely available | https://github.com/microbiomedata/nmdc-schema | SCR_022161 | SciCrunch Registry | 2026-10-10 12:42:03 | 2 | |||||||||
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EL MAVEN Resource Report Resource Website 10+ mentions |
EL MAVEN (RRID:SCR_022159) | data analysis software, data processing software, software application, software resource | Open source LC-MS data processing engine for simplifying metabolomics analysis. Mass spectrometry data processing engine that is optimal for isotopomer labeling and global metabolomic profiling experiments. Interactive software platform that accelerates analysis of LC-MS, GC-MS, and LC-MS/MS datasets. | Mass spectrometry data processing engine, metabolomics analysis, LC-MS data analysis, metabolomic datasets analysis, Elucidata, MAVEN | PMID:31119671 | Free, Available for download, Freely available | https://github.com/ElucidataInc/ElMaven | SCR_022159 | SciCrunch Registry | EL-MAVEN | 2026-10-10 12:41:44 | 10 | ||||||||
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granulator Resource Report Resource Website 1+ mentions |
granulator (RRID:SCR_022158) | data analysis software, data processing software, software application, software resource | Software R package for cell type deconvolution of heterogeneous tissues based on bulk RNAseq data or single cell RNAseq expression profiles.Provides unified testing interface to rapidly run and benchmark multiple deconvolution methods. | cell type deconvolution, heterogeneous tissues, RNAseq data, estimate cell type proportions, bulk transcriptomics data, unified testing interface | Free, Available for download, Freely available | https://github.com/xanibas/granulator | SCR_022158 | SciCrunch Registry | 2026-10-10 12:41:36 | 3 | ||||||||||
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Human Genetics Laboratory: WFS1 Gene Mutation and Polymorphism Database Resource Report Resource Website 1+ mentions |
Human Genetics Laboratory: WFS1 Gene Mutation and Polymorphism Database (RRID:SCR_001113) | data or information resource, data repository, database, service resource, storage service resource | This web site lists the disease causing mutations and polymorphisms found in the Wolfram syndrome (WFS1) gene. Sponsors: This resource is supported by the University of Michigan at Ann Arbor. | frequency, gene, auditory, disease, hearing, neuropathy, polymorphism, research, wolfram syndrome | has parent organization: University of Michigan; Ann Arbor; USA | nif-0000-10276 | SCR_001113 | SciCrunch Registry | WFS1 | 2026-10-10 12:41:45 | 3 | |||||||||
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Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc Service Resource Resource Report Resource Website |
Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc Service Resource (RRID:SCR_022132) | service resource | Provides Fmoc based PNA synthesis. Route consists of repeated cycles of deprotection, activation, coupling and capping.Synthesis of small scale PNA oligomers, which can be performed on common DNA synthesis platforms. | Chemical Synthesis of PNA Oligomers with Fmoc, Synthesis by Fmoc Chemistry, Fmoc-based PNA synthesis, Creative Peptides, PNA Biotech, biomedical service | has parent organization: Creative Peptides | Restricted | SCR_022132 | SciCrunch Registry | Chemical Synthesis of PNA Oligomers with Fmoc, Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc | 2026-10-10 12:41:44 | 0 | |||||||||
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Qvalue Resource Report Resource Website 10+ mentions |
Qvalue (RRID:SCR_001073) | data analysis software, data processing software, software application, software resource | R package that takes a list of p-values resulting from the simultaneous testing of hypotheses and estimates their q-values. It is designed to measure the proportion of false positives when a test is significant. The software is capable of generating plots for visualization. It can be applied to problems in genomics, brain imaging, astrophysics, and data mining. | p value, false positive, null hypothesis, genomics, brain imaging, astrophysics, data mining, r, visualization |
is listed by: OMICtools is hosted by: Bioconductor |
Free, Available for download, Freely available | OMICS_00624 | https://github.com/jdstorey/qvalue | SCR_001073 | SciCrunch Registry | 2026-10-10 12:41:37 | 32 | ||||||||
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eNeoTutor Resource Report Resource Website |
eNeoTutor (RRID:SCR_001590) | eNeoTutor | data or information resource, narrative resource, software application, software resource, training material | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. ASP.NET AJAX .NET 4, Telerik controls enabled application designed to be used with the books presented, papers and web content to help with the acceleration of learning and software development for the neurosciences. All content developed at The Cromwell Workshop is intended to accelerate the implementation of biomedical knowledge, help with EEG clinical certifications and provide the opportunity for students, software developers, neuroscientists, neurologists and neurosurgeons to collaborate globally with knowledge content. e-NeoTutor relies on a subscription model to build software components in multiple languages and access book material. Tutor designed to complement free online course content in neuroscience, work with the Society of Neuroscience, The Human Connectome Project and assist researchers with CNIM certification, biomedical informatics, neuroinformatics and neuroscience training programs. | neuroscience, curriculum, brain computer interface, eeg, tutorial, software development |
is related to: iBIOFind has parent organization: The Cromwell Workshop |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153831 | http://neuronalarchitects.com/eneotutor.html | SCR_001590 | SciCrunch Registry | e-NeoTutor | 2026-10-10 12:41:38 | 0 | ||||||
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Ruby on Rails Resource Report Resource Website 10+ mentions |
Ruby on Rails (RRID:SCR_022129) | RoR | software library, software resource, software toolkit, web application | Open source web application development framework. Model View Controller framework, providing default structures for database, web service, and web pages. | MVC, model–view–controller, web application development framework, Rails | DOI:10.1109/MS.2007.176 | Free, Available for download, Freely available | https://www.wikidata.org/wiki/Q190478 | https://github.com/rails/rails | SCR_022129 | SciCrunch Registry | 2026-10-10 12:42:02 | 10 |
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