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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Mason Resource Report Resource Website 100+ mentions |
Mason (RRID:SCR_002476) | simulation software, software application, software resource | Collection of software tools for simulating biological sequences, including simulations of genome fragment sampling, random genomic sequences, methylation levels, and NGS reads. | read simulating software, sequencing simulation, haplotype simulation | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_00252 | SCR_002476 | Mason2 | 2026-08-09 09:03:28 | 169 | ||||||||
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Simbody(tm): SimTK Multibody Dynamics Toolset Resource Report Resource Website 1+ mentions |
Simbody(tm): SimTK Multibody Dynamics Toolset (RRID:SCR_002684) | simulation software, software application, software resource | This project is a SimTK Core toolset providing general multibody dynamics capability, i.e., the capability to solve Newton's 2nd law F=ma in any set of coordinates. The techniques of rigid body mechanics are used to provide results in Order(n) time for any set of n coordinates. This can be used for internal coordinate modeling of molecules, or for coarse-grained models based on larger chunks. It is also useful for large-scale mechanical models, such as neuromuscular models of human gait. Simbody is provided as an open source, object-oriented C++ API and delivers high-performance, accuracy-controlled science/engineering-quality results. Binaries of this software are bundled with other SimTK Core modules. | articulated body, coarse-grained molecule modeling, constrained motion, internal coordinates, mechanical simulation, mechanics, molecular dynamics, multibody dynamics, rigid body, simtk core, skeletal mechanics, torsion coordinates |
is used by: CPODES numerical integrator is related to: Simtk.org |
PMID:25866705 | Free, Available for download, Freely available | nif-0000-23309 | SCR_002684 | Simbody | 2026-08-09 09:03:37 | 1 | |||||||
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Azure 200 imaging system Resource Report Resource Website |
Azure 200 imaging system (RRID:SCR_028259) | instrument resource | Touchscreen-based gel documentation imaging system. It is designed for UV, color imaging, blue-excited DNA dyes, and Coomassie gel imaging. | gel documentation imaging system, UV, color imaging, blue-excited DNA dyes, Coomassie gel imaging, gel imaging, imaging | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028259.pdf | Model_Number_Azure_200 | SCR_028259 | Azure 200 | 2026-08-08 12:08:26 | 0 | |||||||||
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Azure 400 imaging system Resource Report Resource Website |
Azure 400 imaging system (RRID:SCR_028261) | instrument resource | Imaging system capable of three-channel visible fluorescence detection. Enables sensitive multiplex detection of Western blots, fluorescent biomolecules and Cy2/Cy3/Cy5 or similar fluorochromes. Allows you to simultaneously image and quantify up to three different targets. | Imaging system, visible fluorescence detection, Western blots, fluorescent biomolecules, Cy2/Cy3/Cy5 fluorochromes, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028261.pdf | Model_Number_Azure_400 | SCR_028261 | Azure 400 | 2026-08-08 12:08:26 | 0 | |||||||||
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Azure Cielo 6 RT PCR system Resource Report Resource Website |
Azure Cielo 6 RT PCR system (RRID:SCR_028264) | instrument resource | Azure Cielo 6 is 96 well Real Time-PCR Machine available with 6 sample channels. Used for RT-PCR amplification and SYBR Green fluorescence detection. Engineered for variety of qPCR applications, with high sensitivity and wide dynamic range. Fast qPCR detection system for high-quality data with smart protocols, and robust durability. | 96 well, Real Time-PCR Machine, 6 sample channels, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028264.pdf | Model_Number_Azure_Cielo_6 | SCR_028264 | Azure Cielo 6 | 2026-08-08 12:08:26 | 0 | |||||||||
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Azure Sapphire FL+ Biomolecular Imager IS4100 Resource Report Resource Website |
Azure Sapphire FL+ Biomolecular Imager IS4100 (RRID:SCR_028265) | instrument resource | Large format scanner for precise quantitation of molecular assays. Imaging System 4100 is high-performance laser-based scanner variant designed for fluorescence, phosphor, and chemiluminescence imaging. | Large format scanner, precise quantitation of molecular assays, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028265.pdf | Model_Number_Azure_IS4100 | SCR_028265 | Sapphire FL+ Biomolecular Imager IS4100 | 2026-08-08 12:08:18 | 0 | |||||||||
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Azure 500 imaging system Resource Report Resource Website |
Azure 500 imaging system (RRID:SCR_028262) | instrument resource | Multichannel, multimodal fluorescent imager, with IR, visible light, and UV excitation channels. Able to image and quantify two different targets in the same position more efficiently using near-infrared (NIR). Normalize to fluorescent total protein stain or a housekeeping protein in the green channel without needing to strip and re-probe your Western blots. | fluorescent imager, IR, visible light, UV, excitation channels, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028262.pdf | Model_Number_Azure_500 | SCR_028262 | Azure 500 | 2026-08-08 12:08:18 | 0 | |||||||||
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Azure Cielo 3 RT PCR system Resource Report Resource Website |
Azure Cielo 3 RT PCR system (RRID:SCR_028263) | instrument resource | Azure Cielo 3 is 96 well Real Time-PCR Machine available with 3 sample channels. Used for RT-PCR amplification and SYBR Green fluorescence detection. Engineered for variety of qPCR applications, with high sensitivity and wide dynamic range. Fast qPCR detection system for high-quality data with smart protocols, and robust durability. | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028263.pdf | Model_Number_Azure_Cielo_3 | https://azurebiosystems.com/products/cielo/ | SCR_028263 | Azure Cielo 3 | 2026-08-08 12:08:26 | 0 | |||||||||
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Quantum Design DynaCool Physical Properties Measurement System Resource Report Resource Website |
Quantum Design DynaCool Physical Properties Measurement System (RRID:SCR_028298) | instrument resource | Automated, cryogen-free laboratory instrument used to measure electrical, magnetic, and thermal properties of materials. It controls temperatures from 1.8K to 400K and magnetic fields from 9T to 14T without liquid helium, using a pulse tube cooler. | measure electrical, measure magnetic, measure thermal, properties of materials, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028298.pdf | SCR_028298 | Quantum Design DynaCool PPMS | 2026-08-08 12:08:27 | 0 | ||||||||||
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ADInstruments PowerLab C data acquisition device Resource Report Resource Website |
ADInstruments PowerLab C data acquisition device (RRID:SCR_028296) | instrument resource | Digital data acquisition device used in life science research and education. It converts analog signals from sensors/transducers (e.g., blood pressure, ECG, EEG) into digital data, allowing real-time recording, visualization, and analysis of physiological signals on computer using LabChart software. | convert analog signals from sensors/transducers, blood pressure, ECG, EEG, digital data, physiological signals, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028296.pdf | Model_Number_PowerLab_C | SCR_028296 | PowerLab C | 2026-08-08 12:08:19 | 0 | |||||||||
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Biacore S200 High Throughput Drug Screening Surface Plasmon Resonance System Resource Report Resource Website |
Biacore S200 High Throughput Drug Screening Surface Plasmon Resonance System (RRID:SCR_028290) | instrument resource | Biosensor system designed for rapid, automated analysis of biomolecular interactions. It excels in characterizing and screening small molecule drug candidates and antibody interactions with high sensitivity, offering rapid fragment screening and affinity determination. Detects low molecular weight (LMW) compounds and weak binding interactions. Optimized for rapid screening of libraries with automated data evaluation for up to 384-well plates. Measures binding interactions in real-time without labeling. | Biosensor system, analysis of biomolecular interactions, screening small molecule, drug candidates, antibody interactions, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028290.pdf | Model_Number_Biacore_S200 | SCR_028290 | , Biacore S200 High Throughput Drug Screening SPR System, Biacore S200 system, Surface Plasmon Resonance (SPR) biosensor system | 2026-08-08 12:08:19 | 0 | |||||||||
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Waters Xevo G3 TOF MS Mass Spectrometry System Resource Report Resource Website |
Waters Xevo G3 TOF MS Mass Spectrometry System (RRID:SCR_028344) | instrument resource | High-resolution, benchtop Quadrupole Time-of-Flight mass spectrometer designed for characterizing small molecules and biotherapeutics. Used for analyzing complex samples, offering quantitative/qualitative data, and seamless integration with ACQUITY Premier LC systems. | benchtop spectrometer, Quadrupole Time-of-Flight, mass spectrometry, characterizing small molecules and biotherapeutics, analyzing complex samples, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028344.pdf | Model_Number_Xevo_G3_TOF | SCR_028344 | , Xevo G3 Quadrupole Time-of-Flight System, Xevo G3 TOF MS, Waters Xevo G3 QTof MS, Xevo G3 QToF Mass Spectrometer | 2026-08-08 12:08:20 | 0 | |||||||||
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Multi-Dimensional Viewer Resource Report Resource Website |
Multi-Dimensional Viewer (RRID:SCR_028341) | web application, software resource | Web tool for analyzing, annotating and sharing multi-dimensional data. Visualisation platform used for spatial analysis. | Visualisation platform, spatial analysis, analyzing, annotating, sharing, multi-dimensional data, | PMID:37940670 | SCR_028341 | Multi-Dimensional Viewer (MDV) | 2026-08-08 12:08:27 | 0 | ||||||||||
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Nepa Gene Super Electroporator NEPA21 Type II Resource Report Resource Website |
Nepa Gene Super Electroporator NEPA21 Type II (RRID:SCR_028310) | instrument resource | Specialized gene transfection system designed to introduce molecules (DNA, RNA, siRNA, CRISPR/Cas9) into difficult-to-transfect cells, tissues, and embryos. It uses a unique 4-step, multi-pulse technology to maximize transfection efficiency while maintaining high cell viability. | Electroporator, gene transfection system, multi-pulse technology, maximize transfection efficiency, maintaining high cell viability, | Model_Number_NEPA21_Type_II | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028310.pdf | SCR_028310 | Super Electroporator NEPA21 Type II | 2026-08-08 12:08:27 | 0 | |||||||||
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Bruker: CellScape spatial proteomics system Resource Report Resource Website |
Bruker: CellScape spatial proteomics system (RRID:SCR_028325) | instrument resource | Automated microscopy system for high-plex, subcellular spatial proteomics. System integrates automated microscope, fluidics unit for automated staining, and analysis software. It utilizes cyclic immunofluorescence with EpicIF technology to image, remove signals, and restain tissues to map proteins at single-cell resolution. System is developed by Canopy Biosciences, a Bruker Company, and is often used alongside AI-powered data analysis tools to classify cell phenotypes and visualize tissue architecture. | Canopy Biosciences, automated microscope, EpicIF technology, immunofluorescence, spatial proteomics, classify cell phenotypes, visualize tissue architecture, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028325.pdf | SCR_028325 | , Canopy Biosciences CellScape, CellScape XR, Bruker CellScape, CellScape Precise Spatial Multiplexing platform | 2026-08-08 12:08:27 | 0 | ||||||||||
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BD FACSymphony S6 Cell Sorter Resource Report Resource Website |
BD FACSymphony S6 Cell Sorter (RRID:SCR_028281) | instrument resource | High-performance, multicolor flow cytometer used to analyze and isolate (sort) specific cell populations with high precision, measuring up to 50–60 parameters. Offers 6-way sorting, indexing for single-cell sorting (e.g., RNA-seq), and BSL-2 biosafety containment. | flow cytometer, analyze and isolate specific cell populations, sort cells, 6-way sorting, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028281.pdf | Model_Number_BD_FACSymphony_S6 | SCR_028281 | BD FACSymphony S6 | 2026-08-08 12:08:26 | 0 | |||||||||
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Waters SQ Detector 2 Mass Spectrometer Resource Report Resource Website |
Waters SQ Detector 2 Mass Spectrometer (RRID:SCR_028380) | instrument resource | Compact benchtop single quadrupole mass spectrometer designed for routine, high-performance liquid chromatography (LC-MS) applications. Used for molecular weight confirmation, impurity identification, and quantitative analysis. Compatible with a broad range of chromatography platforms and ionization sources, including APCI and UniSpray, the SQ Detector 2 is the ultimate single quadrupole mass detector for chromatography. | benchtop, single quadrupole, mass spectrometer, liquid chromatography, single quadrupole mass detector, chromatography | is used by: Waters: SQD2 LC/MS system | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028380.pdf | Model_Number_Waters_SQ_Detector_2 | SCR_028380 | Waters SQ Detector 2 | 2026-08-08 12:08:28 | 0 | ||||||||
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ThermoFisher Scientific BB15 CO2 incubator Resource Report Resource Website |
ThermoFisher Scientific BB15 CO2 incubator (RRID:SCR_028386) | instrument resource | Laboratory instrument designed for cell and tissue culture, providing precise temperature (up to 55°C) and CO2 control for optimal, stable growth conditions. It features air-jacketed heating, a fast-recovering humidification system, and options for stainless steel or copper interiors to reduce contamination risk. | incubator, cell and tissue culture, precise temperature, CO2 control, humidification system, stainless steel or copper interiors, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028386.pdf | Model_Number_Thermo_Scientific_BB15_CO2 | SCR_028386 | Thermo Scientific BB 15 CO₂ | 2026-08-08 12:08:28 | 0 | |||||||||
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JEOL JEM-120i Transmission Electron Microscope Resource Report Resource Website |
JEOL JEM-120i Transmission Electron Microscope (RRID:SCR_028383) | instrument resource | Modern 120 kV Transmission Electron Microscope (TEM) designed for high-throughput screening and ease of use in biological, materials science, and nanotechnology research. Resolution: Achieves 0.14 nm (High Resolution) to 0.2 nm (High Contrast) lattice resolution. Magnification: Range from x50 to x1,500,000 (HR) or x1,200,000 (HC). Imaging System: Includes a 4-megapixel, high-speed, high-sensitivity JEOL CMOS camera (NeoView) as standard, with options for a 19-megapixel (SightSKY) camera. Versatile Applications: It can be used for cryo-TEM screening, material sciences, and high-throughput asbestos analysis. | Transmission Electron Microscope (TEM), microscope, electron microscope, cryo-TEM screening, material sciences, high-throughput asbestos analysis, | is used by: Harvard Medical School Electron Microscopy Core Facility | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028383.pdf | Model_Number_JEOL_JEM_120i | SCR_028383 | JEOL JEM 120i TEM | 2026-08-08 12:08:28 | 0 | ||||||||
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Invitrogen Attune CytPix Flow Cytometer Resource Report Resource Website |
Invitrogen Attune CytPix Flow Cytometer (RRID:SCR_028356) | instrument resource | Attune CytPix Flow Cytometer combines acoustic focusing flow cytometry with a high-speed camera to simultaneously collect fluorescent data and high-resolution brightfield images for each cell. It is used for automated, AI-driven morphological analysis alongside traditional immunophenotyping, allowing users to validate cell populations, identify cell-to-cell interactions, and verify cell health (e.g., apoptosis, contamination) in real-time. Attune CytPix is a benchtop analysis cytometer with 4 lasers (488, 405, 561, and 633nm) and a brightfield camera. | benchtop analysis cytometer, 4 lasers, brightfield camera, fluorescent data, high-resolution brightfield images, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_028356.pdf | Model_Number_Attune_CytPix | SCR_028356 | Attune CytPix Flow Cytometer | 2026-08-08 12:08:27 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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