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http://code.google.com/p/adverse-event-reporting-ontology/
An ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events.
Proper citation: Adverse Event Reporting Ontology (RRID:SCR_003571) Copy
http://purl.bioontology.org/ontology/MDCDRG
Ontology of Medical Diagnostic Categories-Diagnosis Related Groups
Proper citation: Medical Diagnostic Categories - Diagnosis Related Groups (RRID:SCR_003725) Copy
A biomedical ontology in the area of vaccine adverse events aimed to represent and analyze various vaccine-specific adverse events. OVAE is an extension of the Ontology of Adverse Events (OAE) and the Vaccine Ontology (VO).
Proper citation: Ontology of Vaccine Adverse Events (RRID:SCR_003442) Copy
A reference terminology and core biomedical ontology for NCI that covers approximately 100,000 key biomedical concepts with terms, codes, definitions, and more than 200,000 inter-concept relationships. It is the reference terminology for NCI, NCI Metathesaurus and NCI informatics infrastructure covering vocabulary for clinical care, translational and basic research, and public information and administrative activities. It includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities; anatomy; agents, drugs and chemicals; genes and gene products and so on. In certain areas, like cancer diseases and combination chemotherapies, it provides the most granular and consistent terminology available. It combines terminology from numerous cancer research related domains, and provides a way to integrate or link these kinds of information together through semantic relationships. NCIt features: * Stable, unique codes for biomedical concepts; * Preferred terms, synonyms, definitions, research codes, external source codes, and other information; * Links to NCI Metathesaurus and other information sources; * Over 200,000 cross-links between concepts, providing formal logic-based definition of many concepts; * Extensive content integrated from NCI and other partners, much available as separate NCIt subsets * Updated frequently by a team of subject matter experts. NCIt is a widely recognized standard for biomedical coding and reference, used by a broad variety of public and private partners both nationally and internationally including the Clinical Data Interchange Standards Consortium Terminology (CDISC), the U.S. Food and Drug Administration (FDA), the Federal Medication Terminologies (FMT), and the National Council for Prescription Drug Programs (NCPDP).
Proper citation: NCI Thesaurus (RRID:SCR_003563) Copy
https://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology
A multi-species anatomy ontology for teleost fishes. It was originally seeded from ZFA, but covers terms relevant to other taxa. The TAO uses terms from the Common Anatomy Reference Ontology (CARO) as a template for its upper level nodes, and the Vertebrate Skeletal Anatomy Ontology (VSAO) for general skeletal anatomy classes. Growth of the TAO is enabled by contributions from data curators and the ichthyological community. The TAO can be browsed by using the NCBO BioPortal and data annotated using TAO terms can be queried using the Phenoscape Knowedgebase.
Proper citation: Teleost Anatomy Ontology (RRID:SCR_001610) Copy
https://github.com/obophenotype/porifera-ontology
An ontology covering the anatomy of Porifera (sponges).
Proper citation: Porifera Ontology (RRID:SCR_000134) Copy
http://purl.bioontology.org/ontology/TEO
Ontology for representing events, time, and their relationships.
Proper citation: Time Event Ontology (RRID:SCR_000310) Copy
http://purl.bioontology.org/ontology/VARIO
An ontology for standardized, systematic description of effects, consequences and mechanisms of variations.
Proper citation: Variation Ontology (RRID:SCR_000311) Copy
http://purl.bioontology.org/ontology/SEDI
An ontology for DICOM as used in the SeDI project.
Proper citation: Semantic DICOM Ontology (RRID:SCR_000309) Copy
http://purl.bioontology.org/ontology/PHYLONT
Ontology for Phylogenetic Analysis
Proper citation: Phylogenetic Ontology (RRID:SCR_000912) Copy
http://purl.bioontology.org/ontology/BHO
An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.
Proper citation: Bleeding History Phenotype Ontology (RRID:SCR_001165) Copy
http://purl.bioontology.org/ontology/ATO
A taxonomy of Amphibia
Proper citation: Amphibian Taxonomy Ontology (RRID:SCR_000906) Copy
http://purl.bioontology.org/ontology/PATHLEX
A comprehensive lexicon - a unified language of anatomic pathology terms - for standardized indexing and retrieval of anatomic pathology information resources.
Proper citation: Anatomic Pathology Lexicon (RRID:SCR_000907) Copy
http://purl.bioontology.org/ontology/HIV
Ontology that encompasses all knowledge about HIV
Proper citation: HIV ontology (RRID:SCR_000908) Copy
http://purl.bioontology.org/ontology/ICD11-BODYSYSTEM
Ontology of a set of body-system terms used in the ICD (International Classification of Diseases) 11 revision
Proper citation: Body System Terms from ICD11 (RRID:SCR_001252) Copy
http://purl.bioontology.org/ontology/BOF
An ontology of biodiversity of INPA
Proper citation: Biodiversity Ontology (RRID:SCR_010204) Copy
http://purl.bioontology.org/ontology/GEXO
An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.
Proper citation: Gene Expression Ontology (RRID:SCR_010326) Copy
http://purl.bioontology.org/ontology/GFO
A top-level ontology integrating objects and processes.
Proper citation: General Formal Ontology (RRID:SCR_010328) Copy
http://purl.bioontology.org/ontology/GFO-BIO
A biological core ontology built on the General Formal Ontology.
Proper citation: General Formal Ontology for Biology (RRID:SCR_010329) Copy
http://purl.bioontology.org/ontology/COGAT
Ontology that characterizes the state of current thought in cognitive science. It defines a set of mental concepts along with a set of mental tasks, and the measurement relations between those classes.
Proper citation: Cognitive Atlas Ontology (RRID:SCR_010295) Copy
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