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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Discrete Morse Resource Report Resource Website |
Discrete Morse (RRID:SCR_018662) | DM | data processing software, image processing software, software application, software resource | Discrete Morse based pipeline for neuron tracing on tracer injection and single neuron data sets. Automatically generates set of trees summarization of given neuron imaging data. Used to extract tree skeletons of individual neurons from volumetric brain image data, and to summarize collections of neurons labelled by tracer injections. | Neuron tracing, tracer injection, single neuron data set, set of trees summarization generation, neuron image data, extract individual neuron tree skeleton, volumetric brain image data, summarize collection, tracer injection labelled neuron | DOI:10.1101/2020.03.21.000323v1 | Free, Freely available | SCR_018662 | SciCrunch Registry | DiscreteMorse | 2026-10-17 01:29:45 | 0 | ||||||||
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minet Resource Report Resource Website |
minet (RRID:SCR_018661) | data analysis software, data processing software, network analysis software, software application, software resource, software toolkit | Open source software R package for inferring large transcriptional networks using mutual information. Implements algorithms for inferring networks such as gene networks from microarray data. | Inferring transcriptional network, mutual information, gene network, microarray data, gene, statistical dependencies model, gene to gene interaciton, statistical quantification, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Bioconductor has parent organization: Free University of Brussels; Brussels; Belgium |
Communaute Francaise de Belgique | PMID:18959772 | Free, Available for download, Freely available | biotools:minet | http://minet.meyerp.com/, https://bio.tools/minet | SCR_018661 | SciCrunch Registry | Mutual Information NETworks | 2026-10-17 01:29:35 | 0 | |||||
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MyGene.info Resource Report Resource Website 10+ mentions |
MyGene.info (RRID:SCR_018660) | data access protocol, service resource, software resource, web service | Web service for querying or retrieving gene annotation data. | Querying gene, gene, annotation, gene annotation, annotation data, gene annotation data, retrieving gene annotation data, bio.tools |
is listed by: Debian is listed by: bio.tools |
NCATS UL1 TR001114; NCI K22 CA188163; NHGRI U01 HG006476; NHGRI U01 HG008473; NIGMS GM083924; NIGMS U54 GM114833; Scripps Translational Science Institute |
DOI:10.1186/s13059-016-0953-9 | Free, Freely available | biotools:mygene.info, BioTools:mygene.info | https://bio.tools/mygene.info, https://bio.tools/mygene.info, https://bio.tools/mygene.info | SCR_018660 | SciCrunch Registry | 2026-10-17 01:30:07 | 34 | ||||||
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Stratagene: 1800 UV Crosslinker Resource Report Resource Website |
Stratagene: 1800 UV Crosslinker (RRID:SCR_018631) | instrument resource | UV crosslinker designed to crosslink DNA or RNA to nylon, nitrocellulose, or nylon reinforced nitrocellulose membranes in 25 to 50 seconds. It is equipped with internal photodetector to compensate for aging ultraviolet bulbs. | Crosslinker, Instrument, Equipment, USEDit, ABRF, Stratagene | is listed by: USEDit | Commercially available | Model_Number_1800, SCR_020532 | https://ipmb.sinica.edu.tw/microarray/index.files/Stratalinker%20UV%20Crosslinker.pdf | SCR_018631 | SciCrunch Registry | 2026-10-17 01:30:06 | 0 | ||||||||
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SCIEX: 4000 QTRAP Mass Spectrometer Resource Report Resource Website |
SCIEX: 4000 QTRAP Mass Spectrometer (RRID:SCR_018630) | instrument resource | Hybrid triple quadrupole linear ion trap mass spectrometer for drug discovery and development, metabolite identification, contaminant testing, proteomic applications, post translationally modified proteins discovery, protein identification, and biomarker validation. | Mass Spectrometer, Instrument, Equipment, USEDit, Sciex, ABRF | is listed by: USEDit | Commercially available | SCR_020508, Model_Number_Sciex_4000_QTRAP | https://collateral.sciex.com/manuals/4000-qtrap-hardware-guide/4000-qtrap-hardware-guide.pdf | SCR_018630 | SciCrunch Registry | 2026-10-17 01:29:28 | 0 | ||||||||
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TA Instruments: Electroforce 3200 Mechanical Testing Apparatus Resource Report Resource Website 1+ mentions |
TA Instruments: Electroforce 3200 Mechanical Testing Apparatus (RRID:SCR_018637) | instrument resource | Mechanical testing apparatus with 225 N or 450 N maximum force and range of static to 300 Hz frequency response. Tests include torsion testing, creep under dynamic loading, special environment hot cold chambers, biomedical research, and engineered materials test applications.. | Mechanical Testing Apparatus, Instrument, Equipment, USEDit, ABRF | is listed by: USEDit | SCR_019752, Model_Number_3200 | https://www.tainstruments.com/wp-content/uploads/ElectroForce_Test_Instruments.pdf | SCR_018637 | SciCrunch Registry | TA Instruments Electroforce 3200 Series Mechanical Testing Apparatus | 2026-10-17 01:29:44 | 2 | ||||||||
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Roche: Ventana Discovery XT Immunohistochemistry Processor Resource Report Resource Website 1+ mentions |
Roche: Ventana Discovery XT Immunohistochemistry Processor (RRID:SCR_018643) | instrument resource | Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. | Immunohistochemistry Processor, Ventana | is listed by: USEDit | Model_Number_Ventana_Discovery_XT | SCR_018643 | SciCrunch Registry | 2026-10-17 01:29:28 | 6 | ||||||||||
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Thermo Fisher: Arcturus Cellect Laser Capture Microdissection System Resource Report Resource Website 100+ mentions |
Thermo Fisher: Arcturus Cellect Laser Capture Microdissection System (RRID:SCR_018641) | instrument resource | Laser capture microdissection system that includes infrared lasers. It can be used for laser capture microdissection LCM, ultraviolet UV laser cutting, sanger sequencing, next generation sequencing, and quantitative PCR. | Arcturus, Laser Capture Microdissection System, Instrument Equipment, USEDit | is listed by: USEDit | Model_Number_XT, SCR_019580 | https://assets.thermofisher.com/TFS-Assets/CSD/Specification-Sheets/Arcturus_Cellect_SpecSheet.pdf | SCR_018641 | SciCrunch Registry | 2026-10-17 01:29:34 | 215 | |||||||||
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Thermo Fisher: Cytomat 6001 Automated Wide Range Incubator Resource Report Resource Website |
Thermo Fisher: Cytomat 6001 Automated Wide Range Incubator (RRID:SCR_018646) | instrument resource | Automated wide range incubator used to minimize plate movement, receive samples, store plates, and track plates.Temperature range is from 10 to 50 degrees Celsius with humidity level of up to 95 rH. | Automated Wide Range Incubator, Instrument, Equipment, USEDit, Thermo Scientific, ABRF | is listed by: USEDit | SCR_020541, Model_Number_Cytomat 6001 | https://www.artisantg.com/info/Kendro_Cytomat_6000_6001_Manual.pdf | SCR_018646 | SciCrunch Registry | 2026-10-17 01:29:44 | 0 | |||||||||
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Leica: SP8 DIVE multi photon microscope Resource Report Resource Website 1+ mentions |
Leica: SP8 DIVE multi photon microscope (RRID:SCR_018852) | SP8 DIVE | instrument resource | Multiphoton confocal microscope with spectrally tunable detection. Equipped with 4Tune, tunable, non descanned detection unit. | Multiphoton microscope, microscope, confocal microscope, Leica microscope, 4Tune, tunable, instrument, equipment | is listed by: USEDit | Restricted | https://www.uu.se/download/18.3e997b3218a92fdae6a1c553/1695042166717/c_600184-l_1-k_leica-sp8-dive-manual---biovis.pdf | SCR_018852 | SciCrunch Registry | SP8 Deep In Vivo Explorer | 2026-10-17 01:29:31 | 2 | |||||||
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TIMER Resource Report Resource Website 1000+ mentions |
TIMER (RRID:SCR_018737) | TIMER | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server for comprehensive analysis of tumor infiltrating immune cells. Web tool for systematical analysis of immune infiltrates across diverse cancer types. Allows users to input function specific parameters, with resulting figures dynamically displayed to access tumor immunological, clinical, and genomic features. | Tumor, tumor infiltrating immune cell, immune cell, cell, analysis, cancer cell, cancer type, tumor immunological feature, tumor genomic feature, display | Dana-Farber Cancer Institute ; National Natural Science Foundation of China ; NCI CA180980 |
PMID:29092952 | Free, Freely available | SCR_018737 | SciCrunch Registry | Tumor IMmune Estimation Resource | 2026-10-17 01:29:46 | 3010 | |||||||
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Imspector Resource Report Resource Website 50+ mentions |
Imspector (RRID:SCR_018863) | data analysis software, data processing software, software application, software resource | Software tool for real time analysis and data visualization. Software system for experimental control and quantitative data analysis in microscopy and spectroscopy.Integration of data processing and acquisition allows real time analysis and visualization of experimental results. | Data analysis, real time data, visualization, quantitative analysis, microscopy, spectroscopy | Free, Freely available | https://github.com/AbberiorInstruments/ImspectorDocs/blob/master/docs/intro.rst, https://imspector.abberior-instruments.com/ | SCR_018863 | SciCrunch Registry | 2026-10-17 01:30:11 | 85 | ||||||||||
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Repetier Host Resource Report Resource Website 10+ mentions |
Repetier Host (RRID:SCR_018901) | 3d visualization software, data processing software, data visualization software, software application, software resource | Open source 3D printing software which supports multi part printing and has slicers. | 3D printing, multi part printing support, slicer, data visualization, 3D visualization | Free, Available for download, Freely available | SCR_018901 | SciCrunch Registry | Repetier-Host | 2026-10-17 01:29:49 | 41 | ||||||||||
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Sutter: Movable Objective Microscope Resource Report Resource Website 1+ mentions |
Sutter: Movable Objective Microscope (RRID:SCR_018860) | MOM | instrument resource | Two photon microscope capable of imaging deep within living specimens when combined with Ti:Sapphire Laser. Provides 3D objective movement and rotation allowing specimen to remain stationary. | Sutter Instruments, two photon microscope, imaging, living specimen, 3D objective movement, 3D objective rotation, stationary speciment, custom design, instrument, equipment, microscope | is listed by: USEDit | Restricted. | SCR_018860 | SciCrunch Registry | Movable Objective Microscope (MOM), Sutter MOM | 2026-10-17 01:29:31 | 5 | ||||||||
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TRACESPipe Resource Report Resource Website 1+ mentions |
TRACESPipe (RRID:SCR_018831) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tool as hybrid pipeline for reconstruction and analysis of viral and host genomes at multi-organ level. Pipeline for identification, assembly, and analysis of viral genomes, that combine DNA sequence data from multiple organs. Cooperation between compression based prediction, sequence alignment, and de-novo assembly. Provides transmission and storage of data. | Hybrid pipeline, genome reconstruction, genome analysis, viral genome, host genome, multi organ sequencing, multi organ level, DNA sequence data, multiple organ data, bio.tools |
is listed by: bio.tools is listed by: Debian |
DOI:10.5524/100771 | Free, Freely available | biotools:tracespipe | http://dx.doi.org/10.5524/100771, https://bio.tools/tracespipe | SCR_018831 | SciCrunch Registry | 2026-10-17 01:30:11 | 2 | |||||||
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Simple Assignment of Spots to Surfaces Resource Report Resource Website 1+ mentions |
Simple Assignment of Spots to Surfaces (RRID:SCR_018797) | SASS | data analysis software, data processing software, software application, software resource | Software tool as custom analysis code combining single-cell traces and spot detection from live imaging movies and using Imaris output. | Custom analysis, single cell trace, spot detection, live imaging movie, assign spots, Imaris detection, expression domain, cell distance |
uses: Imaris has parent organization: University of Manchester; Manchester; United Kingdom |
DOI:10.1101/837179 | Free, Available for download, Freely available | SCR_018797 | SciCrunch Registry | 2026-10-17 01:29:47 | 7 | ||||||||
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Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled Resource Report Resource Website |
Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled (RRID:SCR_018834) | instrument resource | Volume Controlled Ventilator delivers desired tidal volume to animal by precisely controlling stroke of piston. Since actual stroke length may be modified for given stroke, sigh breaths are supported. | Volume controlled ventilator, ventilator, tidal volume delivery, piston stroke control, instrument, equipment | is listed by: USEDit | https://www.harvardapparatus.com/media/harvard/pdf/Inspira_557058_9.pdf | SCR_018834 | SciCrunch Registry | Volume Controlled, Inspira Advanced Safety Ventilator | 2026-10-17 01:29:48 | 0 | |||||||||
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ADInstruments: PowerLab/4SP acquisition system Resource Report Resource Website 10+ mentions |
ADInstruments: PowerLab/4SP acquisition system (RRID:SCR_018833) | instrument resource | Integrated system of hardware and software designed to record, display, and analyse experimental data. Consists of PowerLab recording unit and possible ancillary devices, software that run on computer to which PowerLab is connected. PowerLab/4SP has four inputs for recording external signals. | Record data, display data, analyse experimental data, recording unit, integrated system, ADInstruments | Restricted | https://m-cdn.adinstruments.com/owners-guides/PowerLab%20SP%20Series%20OG.pdf | SCR_018833 | SciCrunch Registry | PowerLab/4SP | 2026-10-17 01:29:38 | 10 | |||||||||
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Millar: PCU-2000 Pressure Control Unit with Patient Isolation Resource Report Resource Website 1+ mentions |
Millar: PCU-2000 Pressure Control Unit with Patient Isolation (RRID:SCR_018840) | instrument resource | Pressure Control Unit is two channel, patient isolated, line powered bridge amplifier for connecting one or two single sensor Millar Mikro-Tip catheters to clinical patient monitor or standalone data acquisition system. Provides built in ridge excitation eliminating need for separate bridge amplifier. Analog output signal level of 1V/100 mmHg is compatible with most pressure monitors and data acquisition systems. In line power supply adapts automatically to line voltages from 100 to 240 volts AC. | Millar, PCU-2000, pressure control unit, patient isolation, amplifier, clinical patient monitor, catherer connector, equipment, instrument | is listed by: USEDit | Restricted | SCR_018892 | https://www.artisantg.com/Scientific/75461-1/Millar-PCU-2000-Dual-Channel-Pressure-Control-Unit-With-Patient-Isolation, https://www.artisantg.com/info/Millar_PCU_2000_Manual.pdf | SCR_018840 | SciCrunch Registry | PCU-2000 Dual Channel Pressure Control Unit, PCU-2000 Pressure Control Unit | 2026-10-17 01:30:11 | 1 | |||||||
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CED: Micro1401-4 data acquisition unit Resource Report Resource Website 1+ mentions |
CED: Micro1401-4 data acquisition unit (RRID:SCR_018846) | instrument resource | Unit records waveform data, digital event and marker information and can simultaneously generate waveform and digital outputs in real time for multi tasking experimental control. | data acquisition unit, cost effective data acquisition, waveform data recording, digital event, marker information, real time, instrument, equipment | is listed by: USEDit | Restricted | https://ced.co.uk/img/Micro4en.pdf | SCR_018846 | SciCrunch Registry | Cost effective Data Acquisition Unit (CED) | 2026-10-17 01:29:48 | 4 |
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