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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Immune Tolerance Network TrialShare Resource Report Resource Website 10+ mentions |
Immune Tolerance Network TrialShare (RRID:SCR_013699) | ITN TrialShare, TrialShare | clinical trial, data or information resource, data repository, service resource, storage service resource | Immune tolerance data management and visualization portal for studies sponsored by Immune Tolerance Network (ITN) and collaborating investigators. Data from published studies are accessible to any user; data from current in-progress studies are accessible to study investigators and collaborators. Includes links to published Figures, tools for visualization and analysis of data, and ability to query study data by subject, group, or any other study parameter. | clinical trial, clinical data, biological specimens, |
is recommended by: National Library of Medicine is related to: Immune Tolerance Network (ITN) |
Type 1 diabetes, Diabetes, Allergy, Asthma, Autoimmune disease, Transplantation, Immunological disorder | NIAID | Restricted | https://www.itntrialshare.org/login/home/login.view?returnUrl=%2Fproject%2Fhome%2Fstart.view%3F | SCR_013699 | SciCrunch Registry | , ITN, TrialShare, Trial Share, Immune Tolerance Network | 2026-10-10 12:39:14 | 29 | |||||
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USAspending.gov Resource Report Resource Website |
USAspending.gov (RRID:SCR_013738) | Database of resources receiving federal financial assistance of more than $25,000. The Federal Funding Accountability and Transparency Act of 2006 was mandated to provide the public access to information regarding organizations and other entities receiving federal funding. | Federal funding, federal contract, federal loan, federal grant, US spending | U.S. Government | Free, Public | SCR_013738 | SciCrunch Registry | 2026-10-10 12:39:08 | 0 | |||||||||||
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Beijing Natural History Museum Resource Report Resource Website |
Beijing Natural History Museum (RRID:SCR_013744) | institution | A museum whose three main focuses are its specimen collection, academic research, and the popularization paleontology, zoology, botany, and anthropology. | Beijing, Museum of Natural History, specimen collection, academic research, paleontology, zoology, botany, anthropology | http://grbio.org/institution/beijing-natural-history-museum-3 | SCR_013744 | SciCrunch Registry | Beijing Museum of Natural History, BNHM | 2026-10-10 12:39:18 | 0 | ||||||||||
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Spatio-temporal transcriptome of the human brain Resource Report Resource Website |
Spatio-temporal transcriptome of the human brain (RRID:SCR_013743) | data or information resource, document, narrative resource | A research paper with supplementary materials reporting the generation and analysis of exon-level transcriptome and associated genotyping data. The experiment represented both males and females of multiple ethnicities and examines gene regulation and expression in different areas of the brain. A data set on the human brain transcriptome as well as insights into the transcriptional foundations of human neurodevelopment is provided. | spatio-temporal, transcriptome data, brain regions, human brain, gene expression, gene regulation |
is related to: Human Brain Transcriptome has parent organization: Yale University; Connecticut; USA |
Kavil Foundation ; NARSAD ; James S. McDonnell Foundation Scholar Award ; NIMH MH081896; NIMH MH089929; NINDS NS054273 |
PMID:22031440 | Public, Free | SCR_013743 | SciCrunch Registry | 2026-10-10 12:39:35 | 0 | ||||||||
|
WinMDI Software Resource Report Resource Website 10+ mentions |
WinMDI Software (RRID:SCR_013745) | Software to analyze flow cytometry listmode data files. | flow cytometry, analysis | http://facs.scripps.edu/software.html | SCR_013745 | SciCrunch Registry | Windows Multiple Document Interface software, Windows Multiple Document Interface for Flow Cytometry | 2026-10-10 12:39:08 | 28 | |||||||||||
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Biotechnology Culture Collection Institution Pusat Penelitian dan Pengembangan Bioteknologi-LIPI Resource Report Resource Website 1+ mentions |
Biotechnology Culture Collection Institution Pusat Penelitian dan Pengembangan Bioteknologi-LIPI (RRID:SCR_013748) | institution | An institutional resource focusing on research in biotechnology. Their goals include becoming a reliable reference in the biotechnological field and improving the performance and professionalism of research institutes. | Indonesia, biotechnology | http://grbio.org/institution/biotechnology-culture-collection-institution-pusat-penelitian-dan-pengembangan | SCR_013748 | SciCrunch Registry | Biotechnology Culture Collection Institution, Pusat Penelitian dan Pengembangan Bioteknologi-LIPI | 2026-10-10 12:39:36 | 1 | ||||||||||
|
Bombay Natural History Museum Resource Report Resource Website |
Bombay Natural History Museum (RRID:SCR_013747) | BNHS | institution | A non-governmental wildlife research institution involved in the conservation of nature, primarily biological diversity and threatened species through action based on research, education and public awareness. Contains publications, collections, and educational materials as well as information on current research. | conservation, Bombay, Mumbai, education, research, natural history | Wikidata: Q2909651, grid.452221.2, ISNI: 0000 0004 0502 0676 | https://ror.org/059hk6n77 | SCR_013747 | SciCrunch Registry | Bombay Natural History Society | 2026-10-10 12:39:15 | 0 | ||||||||
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University of South Florida Center for Biological Defense Resource Report Resource Website |
University of South Florida Center for Biological Defense (RRID:SCR_013749) | USF CBD | An institutional resource focusing on biological defense and infectious disease research. The institution teaches preparation and response to catastrophes, especially bioterrorism preparedness, to local communities and conducts research in detecting and fighting biological agents and infectious diseases. | biological defense, biodefense, biological threat detection, public health, infectious diseases, research | has parent organization: University of South Florida; Florida; USA | SCR_013749 | SciCrunch Registry | USF Center for Biological Defense | 2026-10-10 12:39:18 | 0 | ||||||||||
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DH Writer Resource Report Resource Website |
DH Writer (RRID:SCR_013753) | software resource | Software tool for reformatting abstracts from original submission formats into a text encoding format for publishing on-line and book abstracts. | TEI, abstracts, web interface |
is related to: Digital Resource Tools has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland |
Free, Public | SCR_013753 | SciCrunch Registry | 2026-10-10 12:39:19 | 0 | ||||||||||
|
Free Statistical Software Resource Report Resource Website 1+ mentions |
Free Statistical Software (RRID:SCR_013834) | software resource | A software registry which offers links to various free statistical software programs for stand-alone computing. The software programs are split into different categories: General Packages, Subset Packages, Curve Fitting and Modeling, Biostatistics and Epidemiology, Surveys, Testing and Measurement, Excel Spreadsheets and Add-ins, Programming Languages and Subroutine Libraries, Scripts and Macros, Miscellaneous, and Other Collections. | registry, stand alone computing, statistical software |
is listed by: Educational Resources in Neuroscience is related to: Educational Resources in Neuroscience |
Free, Public | SCR_013834 | SciCrunch Registry | 2026-10-10 12:39:17 | 3 | ||||||||||
|
Collage Authoring Environment Resource Report Resource Website 1+ mentions |
Collage Authoring Environment (RRID:SCR_014008) | software resource, web application | A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site. | web applicaiton, computational experiment, executable paper, collaboration, publication |
is listed by: Connected Researchers is related to: Article of the Future is related to: Connected Researchers has parent organization: Elsevier |
Account required | SCR_014008 | SciCrunch Registry | Collage Authoring Environment for Executable Publications | 2026-10-10 12:39:18 | 2 | |||||||||
|
RunMyCode Resource Report Resource Website 1+ mentions |
RunMyCode (RRID:SCR_014011) | data or information resource, database, service resource, storage service resource | A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode. | database, storage service resource, companion website, code |
is listed by: Connected Researchers is related to: Exec&Share is related to: Exec&Share is related to: Connected Researchers |
Alfred P. Sloan Foundation ; HEC Paris ; National Center for Scientific Research ; University of Orleans ; COlumbia University |
Free, Public, The community can contribute to this resource | r3d100010418 | SCR_014011 | SciCrunch Registry | 2026-10-10 12:39:38 | 4 | ||||||||
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Academic Karma Resource Report Resource Website 1+ mentions |
Academic Karma (RRID:SCR_014017) | production service resource, service resource | A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work. | peer review, peer review management, service resource, prodution service resource |
uses: ORCID - Open Researcher and Contributor ID is listed by: Connected Researchers is related to: Connected Researchers is related to: ORCID - Open Researcher and Contributor ID |
Free, Available to the research community | SCR_014017 | SciCrunch Registry | 2026-10-10 12:39:21 | 1 | ||||||||||
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JournalReviewer Resource Report Resource Website 1+ mentions |
JournalReviewer (RRID:SCR_014014) | collaboration tool, data or information resource, database, software resource | A database which allows researchers to view and comment on the logistics of scientific journals' review processes. JournalReviewer collects and aggregates feedback from users who have submitted manuscripts to journals in order to provide information for others considering journal submissions. Statistics such as turnaround rate, review length and quality, journal recommendations, and desk reject plausabilities are compiled from commentors' ratings. | database, review, journal review, review logistics, collaboration tool |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_014014 | SciCrunch Registry | 2026-10-10 12:39:18 | 1 | ||||||||||
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Journalysis Resource Report Resource Website |
Journalysis (RRID:SCR_014015) | collaboration tool, data or information resource, database, software resource | A database where researchers can read and post reviews of publishing experiences with scientific journals. When writing comments, reviewers are adivsed to provide facts where possible, be specific, be honest, check the review, and offer constructive criticism when writing a negative report. Journalysis collates submitted reviews and data for each journal and provides useful summary information (metrics). Authors wanting to find out more about specific journals can search its databases and find the best journal for their next manuscript submission. Journals can use these reviews and metrics to demonstrate high publishing standards, or to improve standards where reviews may be negative. | database, review, journal review, review logistics, collaboration tool |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_014015 | SciCrunch Registry | 2026-10-10 12:39:19 | 0 | ||||||||||
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CMIND PY Resource Report Resource Website |
CMIND PY (RRID:SCR_014097) | data processing software, image analysis software, software application, software resource, software toolkit | A python toolbox for analysis of MRI images. It relies on calls to a number of widely tested algorithms from the FMRIB software library (FSL) and the advanced normalization tools (ANTS) to provide analysis of simultaneously acquired ASL/BOLD fMRI data. It was developed for analyzing the datasets collected as part of the Cincinnati MR Imaging of NeuroDevelopment (C-MIND) project. | python, toolbox, software toolkit, image analysis software, mri |
uses: FSL uses: ANTS - Advanced Normalization ToolS is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Public | https://research.cchmc.org/c-mind-db/py-doc/html/ | SCR_014097 | SciCrunch Registry | CMIND-PY | 2026-10-10 12:39:12 | 0 | ||||||||
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Useful Science Resource Report Resource Website |
Useful Science (RRID:SCR_013968) | catalog, data or information resource, database, knowledge environment, portal | A collection of concise summaries of scientific articles that link back to the physical article. Users can contribute resources to the site and may choose to provide a summary; if they do not, Useful Science will do so. Summaries are then tagged with the appropriate topic. Topics that relate to everday life such as health, fitness, nutrition, and sleep are the main focus of the site. | catalog, knowledge environment resource, summary, layman, lay person |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to the resource | SCR_013968 | SciCrunch Registry | 2026-10-10 12:39:21 | 0 | ||||||||||
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Plum Analytics Resource Report Resource Website 1+ mentions |
Plum Analytics (RRID:SCR_014023) | data or information resource, service resource | A service resource which provides researchers with metrics around usage, captures, social media, citations, and mentions from various online research outlets. Plum Analytics pulls information from reserch outlets such as journal articles, books, videos, presentations, conference proceedings, datasets, and source code. Plum Analytics also collects metrics for labs, departments, and other research groups. PlumX is a product of Plum Analytics. | service resource, altmetrics, metrics, |
is listed by: PLOS Article-Level Metrics is listed by: Connected Researchers is related to: Connected Researchers |
Available to the research community | SCR_014023 | SciCrunch Registry | 2026-10-10 12:39:21 | 7 | ||||||||||
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PLOS Article-Level Metrics Resource Report Resource Website 1+ mentions |
PLOS Article-Level Metrics (RRID:SCR_014022) | PLOS ALMs | data or information resource, portal, topical portal | A portal which provides access to article level metrics, PLOS news, and videos and presentations. PLOS ALMs provides altmetrics for every article published in PLOS. Researchers can stay up-to-date with their published work and share information about the impact of their publications with collaborators, funders, institutions, and the research community at large. | portal, altmetrics, article level metrics, PLOS |
lists: Plum Analytics lists: ImpactStory is listed by: Connected Researchers |
Sloan Foundation | PMID:19918558 | Free, Public | SCR_014022 | SciCrunch Registry | PLOS Article Level Metrics | 2026-10-10 12:39:39 | 1 | ||||||
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Residual Variation Intolerance Score (RVIS) Resource Report Resource Website 1+ mentions |
Residual Variation Intolerance Score (RVIS) (RRID:SCR_013850) | RVIS | data or information resource, narrative resource, standard specification | A gene-based score intended to help in the interpretation of human sequence data. The score is designed to rank genes in terms of whether they have more or less common functional genetic variation relative to the genome wide expectation given the amount of apparently neutral variation the gene has. A gene with a positive score has more common functional variation, and a gene with a negative score has less and is referred to as intolerant. | gene, score, sequence, interpretation, rank, functional genetic variation | is listed by: Columbia University; New York; USA | NIH Epi4K Sequencing ; Bioinformatics and Biostatistics Core U01NS077303 |
DOI:10.1371/journal.pgen.1003709 | SCR_013850 | SciCrunch Registry | Residual Variation Intolerance Score | 2026-10-10 12:39:10 | 8 |
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