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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cell Cycle Ontology Resource Report Resource Website |
Cell Cycle Ontology (RRID:SCR_007085) | CCO | controlled vocabulary, data or information resource, ontology | An application ontology integrating knowledge about the eukaryotic cell cycle. | obo | is listed by: BioPortal | nlx_157355 | http://www.semantic-systems-biology.org/cco/ | SCR_007085 | 2026-09-12 01:00:12 | 0 | ||||||||
|
Glycomics Ontology Resource Report Resource Website |
Glycomics Ontology (RRID:SCR_010333) | GLYCO | controlled vocabulary, data or information resource, ontology | Ontology that provides an up-to-date knowledge base of experimentally verified glycan structures. Glycan (oligosaccharide or polysaccharide) structures are represented as trees of monosaccharide residues. Linkage to proteins and lipids is supported as well. Insertion of a new glycan is controlled by curation process that includes matching the new glycan against a canonical glyco-tree (a highly branched representation for a family of glycans). | owl | is listed by: BioPortal | nlx_157421 | http://glycomics.ccrc.uga.edu/core4/informatics-ontologies.html | SCR_010333 | 2026-09-12 01:00:33 | 0 | ||||||||
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Single-Nucleotide Polymorphism Ontology Resource Report Resource Website |
Single-Nucleotide Polymorphism Ontology (RRID:SCR_010428) | SNPO | controlled vocabulary, data or information resource, ontology | A domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name it is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels. | owl | is listed by: BioPortal | nlx_157587 | SCR_010428 | SNP Ontology, Single-Nucleotide Polymorphism (SNP) Ontology | 2026-09-12 01:00:34 | 0 | ||||||||
|
Terminological and Ontological Knowledge Resources Ontology Resource Report Resource Website |
Terminological and Ontological Knowledge Resources Ontology (RRID:SCR_010432) | TOK | controlled vocabulary, data or information resource, ontology | An Ontology describing Resources having different formats. This Ontology can be used to annotate and describe Terminological, Ontological Knowledge resources. | owl | is listed by: BioPortal | nlx_157608 | SCR_010432 | 2026-09-12 01:00:34 | 0 | |||||||||
|
EDDA Study Design Terminology Resource Report Resource Website |
EDDA Study Design Terminology (RRID:SCR_010312) | EDDA | controlled vocabulary, data or information resource, ontology | Ontology terms useful for machine learning experiments. The terminology appearing in JMLA has been enriched with terms from MeSH and Emtree, the controlled vocabularies for MEDLINE and Embase, respectively. Synonyms include American and British variants and some inverted terms. | obo |
is listed by: BioPortal has parent organization: University of Pittsburgh School of Medicine; Pennsylvania; USA |
NLM R00LM010943 | PMID:23646024 | nlx_157393 | SCR_010312 | Evidence in Documents Discovery and Analysis Study Design Terminology | 2026-09-12 01:00:33 | 0 | ||||||
|
Tissue Microarray Ontology Resource Report Resource Website |
Tissue Microarray Ontology (RRID:SCR_010434) | TMA | controlled vocabulary, data or information resource, ontology | An OWL schema that expands upon the Tissue microarray (TMA) data exchange specification to assist in data sharing and integration. | owl | is listed by: BioPortal | nlx_157611 | SCR_010434 | 2026-09-12 01:00:34 | 0 | |||||||||
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Bone and Cartilage Tissue Engineering Ontology Resource Report Resource Website |
Bone and Cartilage Tissue Engineering Ontology (RRID:SCR_006595) | BCTEO | controlled vocabulary, data or information resource, ontology | Ontology that describes the field of Tissue Engineering for what concerns bone and cartilage tissues. | obo | is listed by: BioPortal | nlx_157341 | SCR_006595 | 2026-09-12 01:00:33 | 0 | |||||||||
|
Biologie Hors Nomenclature Resource Report Resource Website |
Biologie Hors Nomenclature (RRID:SCR_010249) | BHN | controlled vocabulary, data or information resource, ontology | Nomenclature for innovative activity of biology and anatomo-pathology performed especially in the Centres Hospitalo-Universitaires is usually called activity off nomenclature (BHN for nomenclature and PHN biology for the anatomo-pathology off nomenclature). This character of nomenclature means that health insurance has not yet incorporated these acts in the Nomenclature of acts of biology medical (NABM) or the General Nomenclature of professional acts (NGAP). | owl | is listed by: BioPortal | nlx_157335 | http://www.chu-montpellier.fr/publication/inter_pub/R300/rubrique.jsp | SCR_010249 | 2026-09-12 01:00:33 | 0 | ||||||||
|
Pathogen Transmission Ontology Resource Report Resource Website |
Pathogen Transmission Ontology (RRID:SCR_010404) | PTRANS | controlled vocabulary, data or information resource, ontology | Vocabulary that describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. | obo | is listed by: BioPortal | nlx_157542 | SCR_010404 | 2026-09-12 01:00:34 | 0 | |||||||||
|
Plant Structure Development Stage Resource Report Resource Website 1+ mentions |
Plant Structure Development Stage (RRID:SCR_010410) | PSDS | controlled vocabulary, data or information resource, ontology | A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO). This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant structure development stage branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
nlx_157555 | http://www.plantontology.org | SCR_010410 | 2026-09-12 01:00:34 | 3 | ||||||||
|
Ontology for General Medical Science Resource Report Resource Website |
Ontology for General Medical Science (RRID:SCR_010384) | OGMS | controlled vocabulary, data or information resource, ontology | An ontology based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop (Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology. | owl, clinical, phenotype, medicine, pathological, molecular, cellular, organismal, multi-organismal |
is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code |
nlx_157515 | http://purl.bioontology.org/ontology/OGMS, http://purl.obolibrary.org/obo/ogms.owl | SCR_010384 | Clinical Phenotype Ontology | 2026-09-12 01:00:34 | 0 | |||||||
|
Menelas Project Top-Level Ontology Resource Report Resource Website |
Menelas Project Top-Level Ontology (RRID:SCR_010356) | TOP-MENELAS | controlled vocabulary, data or information resource, ontology | Ontology to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realization of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes. This ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain. | owl | is listed by: BioPortal | nlx_157473 | SCR_010356 | 2026-09-12 01:00:33 | 0 | |||||||||
|
MicroRNA Ontology Resource Report Resource Website |
MicroRNA Ontology (RRID:SCR_010360) | MIRNAO | controlled vocabulary, data or information resource, ontology | An application ontology for microRNAs. | owl | is listed by: BioPortal | nlx_157477 | https://code.google.com/p/mirna-ontology/ | SCR_010360 | 2026-09-12 01:00:33 | 0 | ||||||||
|
Microbial Typing Ontology Resource Report Resource Website |
Microbial Typing Ontology (RRID:SCR_010362) | TYPON | controlled vocabulary, data or information resource, ontology | Ontology that provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field. | owl | is listed by: BioPortal | nlx_157479 | SCR_010362 | 2026-09-12 01:00:33 | 0 | |||||||||
|
RNA Ontology Resource Report Resource Website 1+ mentions |
RNA Ontology (RRID:SCR_003470) | RNAO | controlled vocabulary, data or information resource, ontology | An ontology to capture all aspects of RNA - from primary sequence to alignments, secondary and tertiary structure from base pairing and base stacking to sophisticated motifs. | owl, obo, molecular structure, molecular, rna, sequence, alignment, structure, base pairing, base stacking, motif |
is listed by: BioPortal is listed by: OBO is listed by: Google Code |
Free, Available for download, Freely available | nlx_157566 | http://purl.bioontology.org/ontology/RNAO, http://rnao.googlecode.com/svn/trunk/rnao.obo | SCR_003470 | 2026-09-12 01:00:09 | 1 | |||||||
|
Influenza Ontology Resource Report Resource Website |
Influenza Ontology (RRID:SCR_003346) | FLU | controlled vocabulary, data or information resource, ontology | An application ontology established by a collaborative group of influenza researchers that includes consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS) | owl, health, pathological, organismal, cellular, sequence, surveillance |
is listed by: BioPortal is listed by: OBO is related to: Information Artifact Ontology has parent organization: University of Maryland; Maryland; USA |
Influenza | Free, Freely available | nlx_157440 | http://purl.obolibrary.org/obo/flu.owl, http://influenzaontologywiki.igs.umaryland.edu/ | http://purl.bioontology.org/ontology/FLU | SCR_003346 | 2026-09-12 01:00:09 | 0 | |||||
|
Mouse Experimental Design Ontology Resource Report Resource Website |
Mouse Experimental Design Ontology (RRID:SCR_003879) | MEDO | controlled vocabulary, data or information resource, ontology | Ontology of experimental design for high-throughput mouse analysis pipelines. | owl | is listed by: BioPortal | nlx_157487 | SCR_003879 | 2026-09-12 01:00:09 | 0 | |||||||||
|
Cell Type Ontology Resource Report Resource Website 10+ mentions |
Cell Type Ontology (RRID:SCR_004251) | CL | controlled vocabulary, data or information resource, ontology | Ontology designed as a structured controlled vocabulary for cell types. It was constructed for use by the model organism and other bioinformatics databases. It includes cell types from prokaryotes, mammals, and fungi. The ontology is available in the formats adopted by the Open Biological Ontologies umbrella and is designed to be used in the context of model organism genome and other biological databases. | cell ontology, ontology repository |
is listed by: BioPortal is listed by: Ontology Lookup Service is related to: CELDA Ontology is related to: OBO is related to: Cell Line Knowledge Base |
BBSRC ; MRC ; NIH ; NSF DBI-9978564; NSF PGRP-0321666 |
PMID:15693950 | Free, Freely available | nlx_26501 | http://purl.bioontology.org/ontology/CL | http://cellontology.org, http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell, | SCR_004251 | cellontology.org, Obo-cell-type, Cell Ontology | 2026-09-12 01:00:10 | 10 | |||
|
MedlinePlus Resource Report Resource Website 50+ mentions |
MedlinePlus (RRID:SCR_006512) | MedlinePlus | data or information resource, database, video resource | Database of authoritative health information about diseases, conditions, and wellness issues that offers reliable, up-to-date health information for free. It contains the latest treatments, information on drugs and supplements, the meanings of words, and medical videos and illustrations. Links to the latest topic or disease specific medical research or clinical trials are also offered. * MedlinePlus pages contain carefully selected links to Web resources with health information on over 900 topics. ** The MedlinePlus health topic pages include links to current news on the topic and related information. You can also find preformulated searches of the MEDLINE/PubMed database, which allow you to find references to latest health professional articles on your topic. * The A.D.A.M. medical encyclopedia brings health consumers an extensive library of medical images and videos, as well as over 4,000 articles about diseases, tests, symptoms, injuries, and surgeries. * The Merriam-Webster medical dictionary allows you to look up definitions and spellings of medical words. * Drug and supplement information is available from the American Society of Health-System Pharmacists (ASHP) via AHFS Consumer Medication Information, and Natural Medicines Comprehensive Database Consumer Version. ** AHFS Consumer Medication Information provides extensive information about more than 1,000 brand name and generic prescription and over-the-counter drugs, including side effects, precautions and storage for each drug. ** Natural Medicines Comprehensive Database Consumer Version is an evidence-based collection of information on alternative treatments. MedlinePlus has 100 monographs on herbs and supplements. * Interactive tutorials from the Patient Education Institute explain over 165 procedures and conditions in easy-to-read language. An XML File for the MedlinePlus Health Topics is available, http://www.nlm.nih.gov/medlineplus/xmldescription.html. The ontology is available through Bioportal, http://bioportal.bioontology.org/ontologies/MEDLINEPLUS | drug, herb, medication, over-the-counter, prescription, supplement, health, clinical trial, disease, condition, image, test, symptom, injury, surgery, generic drug, umls, ontology, gold standard |
is listed by: BioPortal is related to: EBIMed is related to: MalaCards has parent organization: National Library of Medicine |
Free | nif-0000-10315 | SCR_006512 | MedlinePlus Health Topics, MedlinePlus - Drugs, Supplements and Herbal Information | 2026-09-12 01:01:43 | 99 |
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