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https://mix-n-match.toolforge.org/#/

Software tool for importing data sets into Wikidata. Can list entries of some external databases, and allows users to match them against Wikidata items.

Proper citation: Mix n Match (RRID:SCR_021302) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/

Software package includes combination of four cell references for umbilical cord blood deconvolution using IlluminaHumanMethylation arrays 450K and EPIC.

Proper citation: FlowSorted.CordBloodCombined.450k (RRID:SCR_022849) Copy   

•   Source: SciCrunch Registry

https://www.birdlife.org/

Registered charity and company limited by guarantee with mission to conserve birds, their habitats and global biodiversity, working with people toward sustainability in the use of natural resources. Registered in England. Provides bird species range map.

Proper citation: BirdLife International (RRID:SCR_026243) Copy   

•   Source: SciCrunch Registry

https://cores.research.asu.edu/materials/equipment/raman-spectrometer-custom-built-multi-wavelengths

Micro-Raman Spectrometer uses a fingerprint technique to identify materials based on vibrations. Its sensitivity can give information on composition and strain. Capabilities: 4 lasers: 355nm, 532 nm, 633nm and 785 nm. Spatial resolution: ~ 0.5 microns. Spectral resolution: < 1 cm-1. 2 spectrometers: depending on applications: 750 mm visible. 328 mm visible and Near IR optimized Si detector. (New 2025) Can collect down to 5 cm-1 with 532nm laser. Polarization control (both incident laser (including circularly polarized incident laser and signal). Raman mapping capabilities (New high-resolution stage installed in 2017). Photoluminescence from 400nm to ~1000nm. No or minimal sample preparation: Nondestructive. Works for most liquid, gas or solid. Pure phase, multi-phases, glasses, single crystals and even artwork, such as paintings. Some applications: Phase identification (compare to a published spectrum/ standard) investigate small chemical/structural. Strain/defects in some material. Sample mapping. In situ characterization at high pressure and or temperature or within a medium.

Proper citation: Arizona State University Knowledge Enterprise Eyring Materials Center: Raman Spectrometer (RRID:SCR_028603) Copy   

•   Source: SciCrunch Registry

http://wordpress.org/extend/plugins/

Plugins can extend WordPress to do almost anything you can imagine. In the directory you can find, download, rate, and comment on all the best plugins the WordPress community has to offer. Search for res-comms for Beyond the pdf related plugins. WordPress can host your plugin and give it some exposure. You'll be able to: # Keep track of how many people have downloaded it. # Let people leave comments about your plugin. # Get your plugin rated against all the other cool WordPress plugins. # Give your plugin lots of exposure in this centralized repository.

Proper citation: WordPress Plugin Directory (RRID:SCR_006332) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/

A hosting site for the distributed version control systems (DVCS) Git and Mercurial. The service offering includes an issue tracker and wiki, as well as integration with a number of popular services such as Basecamp, Flowdock, and Twitter.

Proper citation: Bitbucket (RRID:SCR_000502) Copy   

•   Source: SciCrunch Registry

http://code.google.com/

Developer tools, APIs and resources. Search developers.google.com and code.google.com.

Proper citation: Google Code (RRID:SCR_005786) Copy   

•   Source: SciCrunch Registry

http://www.openbioinformatics.org/

An open bioinformatis software repository with no tie to any organization or institution. Contact them to host your software.

Proper citation: OpenBioinformatics.org (RRID:SCR_002229) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/

Repository of open source tools for behavioral neuroscience research. OpenBehavior features hardware (tools, devices, apparatuses), as well as software for data acquisition and analysis and for the investigation of animal behavior and cognition. Dedicated to accelerating research through promotion of collaboration and open source projects.

Proper citation: OpenBehavior (RRID:SCR_015938) Copy   

•   Source: SciCrunch Registry

https://code.gov/

Code repository for all government funded software. Designed to support reuse and public access to custom developed Federal source code. It requires new custom developed source code developed specifically by or for Federal Government to be made available for sharing and re-use across all Federal agencies. Provides tools to help government and public collaborate on open source projects.

Proper citation: code.gov (RRID:SCR_017601) Copy   

•   Source: SciCrunch Registry

https://pypi.org/

Software repository for Python programming language.Used to find and install software developed and shared by Python community.

Proper citation: PyPI (RRID:SCR_023145) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/sfmproject/

Structure from motion algorithms repository. Common interface for various sfm algorithms.

Proper citation: SFMProject (RRID:SCR_014166) Copy   

•   Source: SciCrunch Registry

http://mloss.org/software/

A software repository which provides open source software for machine learning. Software entries include information such as author, license, data format, and programming language. The ultimate goal of mloss.org is to create a comprehensive open source machine learning environment where open source machine learning software can compete with comercial closed source solutions.

Proper citation: machine learning open source software (RRID:SCR_013990) Copy   

•   Source: SciCrunch Registry

http://ubbmc.buffalo.edu/research/ibsos.php

Multi-center placebo-controlled randomized clinical trial to assess the short-term and long-term efficacy of cognitive behavior therapy (CBT) for irritable bowel syndrome (IBS) using two treatment delivery systems: self administered CBT and therapist administered CBT. Long term project goals are to develop an effective self-administered behavioral treatment program that can enhance the quality of patient care, improve clinical outcomes, and decrease the economic and personal costs of one of the most prevalent and intractable gastrointestinal disorders.

Proper citation: Irritable Bowel Syndrome Outcome Study (RRID:SCR_001504) Copy   

•   Source: SciCrunch Registry

https://www.clinicaltrials.gov/study/NCT00064753

Multi-center, randomized, double blind controlled clinical trial to determine whether treatment with a standard multivitamin augmented with high doses of folic acid, vitamin B6 and vitamin B12 reduces the rate of cardiovascular disease outcomes in renal transplant recipients relative to participants receiving a similar multivitamin that contains no folic acid. This study hopes to show that by reducing the level of homocysteine in the body, the risk of heart disease is also reduced among kidney transplant patients.

Proper citation: Folic Acid for Vascular Outcome Reduction in Transplantation (RRID:SCR_001505) Copy   

•   Source: SciCrunch Registry

https://github.com/lapphe/raspberry_rat

Software Python platform for recording, converting, and uploading videos to cloud and for performing scheduled video recordings. Repository also includes wiki section with comprehensive guide to setting up Raspberry Pis for this purpose. Raspberry Pis are often cheaper than camcorder and can produce HD video. They are also equipped with infrared camera, making them ideal for recordings of animals that are active in low light conditions.

Proper citation: Rasberry rat (RRID:SCR_023467) Copy   

•   Source: SciCrunch Registry

https://github.com/PIEFoundry/Microfabrication/wiki/Parylene-MEA-Fabrication

Parylene MEA Fabrication is related to SPARC. Repository for standard fabrication procedure for Parylene C microelectrode arrays and similar devices.

Proper citation: HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS (RRID:SCR_023681) Copy   

•   Source: SciCrunch Registry

https://clinicaltrials.gov/study/NCT00342927?term=AREA%5BBasicSearch%5D(NIDDK%20endocrine%20and%20diabetes)%20AND%20AREA%5BSponsorSearch%5D(NIDDK)%20AND%20AREA%5BOverallStatus%5D(NOT_YET_RECRUITING%20OR%20RECRUITING%20OR%20ACTIVE_NOT_RECRUITING)&rank=1

Multicenter observational study designed to identify genetic determinants of diabetic nephropathy. It is conducted in eleven U.S. clinical centers and a coordinating center, and with four ethnic groups (European Americans, African Americans, Mexican Americans, and American Indians). Two strategies are used to localize susceptibility genes: a family-based linkage study and a case-control study using mapping by admixture linkage disequilibrium (MALD). In the family-based study, probands with diabetic nephropathy are recruited with their parents and selected siblings. Linkage analyses will be conducted to identify chromosomal regions containing genes that influence the development of diabetic nephropathy or related quantitative traits such as serum creatinine concentration, urinary albumin excretion, and plasma glucose concentrations. Regions showing evidence of linkage will be examined further with both genetic linkage and association studies to identify genes that influence diabetic nephropathy or related traits. Two types of MALD studies are being done. One is a case-control study of unrelated individuals of Mexican American heritage in which both cases and controls have diabetes, but only the case has nephropathy. The other is a case-control study of African American patients with nephropathy (cases) and their spouses (controls) unaffected by diabetes and nephropathy; offspring are genotyped when available to provide haplotype data. The specific goals of this program: * Delineate genomic regions associated with the development and progression of renal disease(s) * Evaluate whether there is a genetic link between diabetic nephropathy and diabetic retinopathy * Improve outcomes * Provide protection for people at risk and slow the progression of renal disease * Help establish a resource for genetic studies of kidney disease and diabetic complications by creating a repository of genetic samples and a database * Encourage studies of the genetics of progressive renal disease

Proper citation: Family Investigation of Nephropathy of Diabetes (RRID:SCR_001525) Copy   

•   Source: SciCrunch Registry

https://clinicaltrials.gov/study/NCT01885559

Consortium established to design and implement clinical trials of treatments that might slow the progressive loss of renal function in Polycystic Kidney Disease (PKD). Two multicenter randomized, double-blind, placebo controlled clinical trials are running concurrently to study the efficacy of renin-angiotensin-aldosterone system blockade on the progression of cystic disease (kidney volume) and on the decline in renal function in autosomal dominant polycystic kidney disease (ADPKD). Study A is to study whether intensive ACE-I/ARB blockade decrease the progression of cystic disease compared to ACE-I monotherapy patients with early disease, relatively preserved renal function, and high-normal BP or hypertension. Study B is to study whether intensive ACE-I/ARB blockade as compared to ACE-I monotherapy slow the decline in kidney function, end-stage of renal disease, or death in the setting of standard blood pressure control in hypertensive patients with moderately advanced disease.

Proper citation: HALT PKD (RRID:SCR_001529) Copy   

•   Source: SciCrunch Registry

http://www.isletstudy.org/

Network of centers to conduct studies of islet transplantation in patients with type 1 diabetes to improve the safety and long-term success of methods for transplanting islets. It is the aim of this trial to improve methods of isolating islets, to improve techniques for the administering those transplanted islets; and to develop approaches to minimize the toxic effects of immunosuppressive drugs required for transplantation.

Proper citation: Clinical Islet Transplantation Study (RRID:SCR_001515) Copy   

•   Source: SciCrunch Registry