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Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis.
Proper citation: Academy Biomedical Company (RRID:SCR_001108) Copy
http://bioinformatics.mdanderson.org/main/BreakFusion
Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data.
Proper citation: BreakFusion (RRID:SCR_001102) Copy
Medical school division of Virginia Commonwealth University.
Proper citation: Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) Copy
The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education.
Proper citation: U.S. Department of Education (RRID:SCR_001060) Copy
https://omictools.com/npebseq-tool
A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data.
Proper citation: NPEBseq (RRID:SCR_001014) Copy
A commercial antibody supplier that specializes in high-quality monoclonal antibodies and antigens for the diagnostic industry.
Proper citation: Hytest (RRID:SCR_001133) Copy
http://www.stat.brown.edu/ZWU/research.aspx
Borrows information across sequences to establish prior distribution of sample variation, so that biological variation can be accounted for even when replicates are not available.
Proper citation: ASC (RRID:SCR_001013) Copy
Commercial antibody supplier and developer for biomedical research. These products are compatible with use in flow cytometry and mass cytometry, immunoprecipitation and chip, western blotting, immunofluorescence microscopy, and quantitative multiplexing.
Proper citation: BioLegend (RRID:SCR_001134) Copy
Commercial supplier which provides antibodies, assay kits, biomarkers, and proteins.
Proper citation: NewEast Biosciences (RRID:SCR_001129) Copy
Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs.
Proper citation: University of Utah; Utah; USA (RRID:SCR_001003) Copy
A federally chartered, private, coeducational, nonsectarian, historically black university in Washington, D.C. Howard University has graduate schools in many fields, including business, nursing, engineering, and medicine.
Proper citation: Howard University; Washington D.C. (RRID:SCR_001084) Copy
https://code.google.com/p/jmzml/
A Java application programming interface (API) for the Proteomics Standards Initiative mzML data standard.
Proper citation: jmzML (RRID:SCR_001119) Copy
http://bioconductor.org/packages/devel/bioc/html/massiR.html
Software that predicts the sex of samples in gene expression microarray datasets.
Proper citation: massiR (RRID:SCR_001157) Copy
https://www.phoenixpeptide.com/
Commercial antibody supplier that specializes in peptide-related products for research in obesity, cardiovascular disease, and diabetes.
Proper citation: Phoenix Pharmaceuticals (RRID:SCR_001141) Copy
http://www.ebi.ac.uk/~stijn/reaper/reaper.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. Software program for demultiplexing, trimming and filtering short read sequencing data.
Proper citation: Reaper - Demultiplexing trimming and filtering sequencing data (RRID:SCR_001144) Copy
http://www.proteomeresources.com/
THIS RESOURCE IS NO LONGER IN SERVCE, documented on August, 19, 2021. Antibody supplier.
Proper citation: Proteome Resources (RRID:SCR_006468) Copy
A free program for multiple sequence alignment editing, visualisation and analysis that is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation. Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities. It uses Jmol to view 3D structures, and VARNA to display RNA secondary structure.
Proper citation: Jalview (RRID:SCR_006459) Copy
http://www.sciencemag.org/site/multimedia/podcast/index.xhtml
The Science Podcast takes you on a tour of some interesting stories in the journal and online. * MP3 of this show * Transcript of this show * Subscribe to the Science Podcast RSS Feed
Proper citation: Science Podcast (RRID:SCR_006453) Copy
Private research university located in Gyeongsan, North Gyeongsang, South Korea. University includes colleges of Law and Medicine and teaching hospital.
Proper citation: Yeungnam University; North Gyeongsang; South Korea (RRID:SCR_006575) Copy
http://www.bioconductor.org/packages/release/bioc/html/SRAdb.html
Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata.
Proper citation: SRAdb (RRID:SCR_006524) Copy
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