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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Academy Biomedical Company Resource Report Resource Website |
Academy Biomedical Company (RRID:SCR_001108) | commercial organization | Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis. | antibody, cardiovascular, athersclerosis, antibody supplier | nlx_152249 | SCR_001108 | Academy Bio-Medical Company, Academy Biomedical Company Inc. | 2026-08-08 11:57:38 | 0 | ||||||||||
|
BreakFusion Resource Report Resource Website 1+ mentions |
BreakFusion (RRID:SCR_001102) | BreakFusion | software resource | Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data. | computational pipeline, gene fusions, rna, sequence, data, perl, c++ |
is listed by: OMICtools has parent organization: University of Texas MD Anderson Cancer Center |
PMID:22563071 DOI:10.1093/bioinformatics/bts272 |
Free, Available for download, Freely available | OMICS_01342 | SCR_001102 | 2026-08-08 11:57:38 | 3 | |||||||
|
Virginia Commonwealth University School of Medicine; Virginia; USA Resource Report Resource Website |
Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) | VCU SOM | university | Medical school division of Virginia Commonwealth University. | virginia, medical, medicine, commonwealth, medical school, continuing medical education, residency | has parent organization: Virginia Commonwealth University; Virginia; USA | nlx_64661 | SCR_001061 | VCU School of Medicine | 2026-08-08 11:57:25 | 0 | ||||||||
|
U.S. Department of Education Resource Report Resource Website 1+ mentions |
U.S. Department of Education (RRID:SCR_001060) | ED | institution | The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education. | education, federal, financial aid, fafsa, government department | is parent organization of: National Institute on Disability and Rehabilitation Research | Available to groups within the United States of America | grid.419881.d, Crossref funder ID: 100000138, Wikidata: Q861556, nlx_143871, ISNI: 0000 0001 2176 2483 | https://ror.org/021adze67 | SCR_001060 | ED.gov, United States Department of Education | 2026-08-08 11:57:36 | 2 | ||||||
|
NPEBseq Resource Report Resource Website 1+ mentions |
NPEBseq (RRID:SCR_001014) | NPEBseq | software resource | A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data. | rna, rna sequence, seq, empirical, Bayesian, nonparametric | is listed by: OMICtools | PMID:23981227 | OMICS_01312 | http://bioinformatics.wistar.upenn.edu/NPEBseq | SCR_001014 | 2026-08-08 11:57:35 | 1 | |||||||
|
Hytest Resource Report Resource Website 1+ mentions |
Hytest (RRID:SCR_001133) | commercial organization | A commercial antibody supplier that specializes in high-quality monoclonal antibodies and antigens for the diagnostic industry. | antibody, monoclonal, antigen, diagnostic, research and development, r and d | nlx_152378, grid.417767.4, Wikidata: Q5952196 | https://ror.org/031cpdm45 | SCR_001133 | HyTest Ltd. | 2026-08-08 11:57:26 | 5 | |||||||||
|
ASC Resource Report Resource Website 1+ mentions |
ASC (RRID:SCR_001013) | ASC | software resource | Borrows information across sequences to establish prior distribution of sample variation, so that biological variation can be accounted for even when replicates are not available. | sample variation, rna, dna, biology, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Brown University; Rhode Island; USA |
biotools:sqn, OMICS_01298 | https://bio.tools/sqn | SCR_001013 | 2026-08-08 11:57:21 | 1 | ||||||||
|
BioLegend Resource Report Resource Website 5000+ mentions |
BioLegend (RRID:SCR_001134) | commercial organization | Commercial antibody supplier and developer for biomedical research. These products are compatible with use in flow cytometry and mass cytometry, immunoprecipitation and chip, western blotting, immunofluorescence microscopy, and quantitative multiplexing. | commercial, antibody, reagent, biomedical, research, san diego | nlx_152302 | SCR_001134 | 2026-08-08 11:57:23 | 6621 | |||||||||||
|
NewEast Biosciences Resource Report Resource Website |
NewEast Biosciences (RRID:SCR_001129) | commercial organization | Commercial supplier which provides antibodies, assay kits, biomarkers, and proteins. | antibody, pennsylvania, commercial, assay kit, oncogene | nlx_152421 | SCR_001129 | 2026-08-08 11:57:26 | 0 | |||||||||||
|
University of Utah; Utah; USA Resource Report Resource Website |
University of Utah; Utah; USA (RRID:SCR_001003) | university | Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs. | public, university, graduate, post graduate, undergraduate, master's |
is related to: International AMD Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is parent organization of: University of Utah School of Medicine; Utah; USA is parent organization of: ShapeWorks is parent organization of: Pathline is parent organization of: Yandell Lab Portal is parent organization of: University of Utah Labs and Facilities is parent organization of: SLOPE is parent organization of: University of Utah Genetic Science Learning Center - Learn Genetics is parent organization of: Center for Integrative Biomedical Computing is parent organization of: SCIRun is parent organization of: Seg3D is parent organization of: TumorSim is parent organization of: SSU rRNA Modification Database is parent organization of: MMAPPR is parent organization of: MAKER is parent organization of: MAKER Web Annotation Service is parent organization of: Viking Viewer for Connectomics is parent organization of: VisTrails is parent organization of: Mouse Party is parent organization of: Atlases of the Brain is parent organization of: Schmidtea mediterranea Genome Database is parent organization of: Medical Biochemistry Resource is parent organization of: Georgie Project is parent organization of: BioMesh3D is parent organization of: ImageVis3D is parent organization of: map3d is parent organization of: MizBee is parent organization of: GNomEx is parent organization of: University of Utah Microarray and Genomic Analysis Core Facility is parent organization of: University of Utah Flow Cytometry Core Facility is parent organization of: BioPSE is parent organization of: RNA Modification Database is parent organization of: Nornir is parent organization of: ABC (Atlas Based Classification) is parent organization of: DTIProcess ToolKit is parent organization of: SCORE is parent organization of: Neoseg is parent organization of: FluoRender is parent organization of: Ir-tweak is parent organization of: GEMINI is parent organization of: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core is parent organization of: peddy is parent organization of: ITK-SNAP is parent organization of: University of Utah Cell Imaging Core Facility |
nlx_26775, Wikidata:Q168515, grid.223827.e, ISNI:0000 0001 2193 0096, Crossref funder ID:100007747 | https://ror.org/03r0ha626 | SCR_001003 | University of Utah | 2026-08-08 11:57:21 | 0 | ||||||||
|
Howard University; Washington D.C. Resource Report Resource Website |
Howard University; Washington D.C. (RRID:SCR_001084) | HU | university | A federally chartered, private, coeducational, nonsectarian, historically black university in Washington, D.C. Howard University has graduate schools in many fields, including business, nursing, engineering, and medicine. | undergraduate, graduate, master's, doctoral, phD, institution, university, nonsectarian |
is related to: Clinical and Translational Science Awards Consortium is parent organization of: Howard Flow Cytometry Core is parent organization of: Howard Imaging Core Facility: Molecular Imaging Laboratory is parent organization of: Howard Biobehavioral Core Laboratory is parent organization of: Howard Biostatistics Core is parent organization of: Howard University Center for Computational Biology and Bioinformatics Core Facility is parent organization of: Howard Molecular Genetics Core is parent organization of: Howard Nanoscale Science and Engineering Facility is parent organization of: Howard RCMI Proteomics Facility |
nlx_152178 | SCR_001084 | Howard, Howard University, Howard U | 2026-08-08 11:57:25 | 0 | ||||||||
|
jmzML Resource Report Resource Website 1+ mentions |
jmzML (RRID:SCR_001119) | software resource | A Java application programming interface (API) for the Proteomics Standards Initiative mzML data standard. | standalone software, mac os x, unix/linux, windows, java, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Google Code |
PMID:20127693 | Free, Available for download, Freely available | biotools:jmzml, OMICS_03340 | https://bio.tools/jmzml | SCR_001119 | 2026-08-08 11:57:26 | 1 | |||||||
|
massiR Resource Report Resource Website |
massiR (RRID:SCR_001157) | software resource | Software that predicts the sex of samples in gene expression microarray datasets. | standalone software, mac os x, unix/linux, windows, r, classification, clustering, gene expression, microarray, quality control, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:24659105 | Free, Available for download, Freely available | biotools:massir, OMICS_03638 | https://bio.tools/massir | SCR_001157 | massiR: MicroArray Sample Sex Identifier, MicroArray Sample Sex Identifier | 2026-08-08 11:57:38 | 0 | ||||||
|
Phoenix Pharmaceuticals Resource Report Resource Website 1000+ mentions |
Phoenix Pharmaceuticals (RRID:SCR_001141) | commercial organization | Commercial antibody supplier that specializes in peptide-related products for research in obesity, cardiovascular disease, and diabetes. | antibody, peptide, obesity, cardiovascular, diabetes, commercial, biomaterial supply resource | nlx_152429 | SCR_001141 | Phoenix Pharmaceuticals Inc. | 2026-08-08 11:57:26 | 1136 | ||||||||||
|
Reaper - Demultiplexing trimming and filtering sequencing data Resource Report Resource Website 1+ mentions |
Reaper - Demultiplexing trimming and filtering sequencing data (RRID:SCR_001144) | Reaper | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. Software program for demultiplexing, trimming and filtering short read sequencing data. | c, alignment, sequence, demultiplex, trim, filter, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: European Bioinformatics Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:reaper, OMICS_02157 | https://bio.tools/reaper | SCR_001144 | 2026-08-08 11:57:38 | 1 | |||||||
|
Proteome Resources Resource Report Resource Website |
Proteome Resources (RRID:SCR_006468) | commercial organization | THIS RESOURCE IS NO LONGER IN SERVCE, documented on August, 19, 2021. Antibody supplier. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152439 | SCR_006468 | 2026-08-08 11:58:58 | 0 | |||||||||||
|
Jalview Resource Report Resource Website 1000+ mentions |
Jalview (RRID:SCR_006459) | Jalview | software resource | A free program for multiple sequence alignment editing, visualisation and analysis that is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation. Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities. It uses Jmol to view 3D structures, and VARNA to display RNA secondary structure. | edit, analysis, annotation, multiple sequence alignment, wysiwyg, bio.tools, FASEB list |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: University of Dundee; Scotland; United Kingdom |
BBSRC BBSB16542 | PMID:19151095 DOI:10.1093/bioinformatics/btp033 |
GNU General Public License, v3, Acknowledgement requested | OMICS_00885, biotools:Jalview | https://bio.tools/Jalview, https://sources.debian.org/src/jalview/ | SCR_006459 | 2026-08-08 11:58:58 | 4136 | |||||
|
Science Podcast Resource Report Resource Website |
Science Podcast (RRID:SCR_006453) | Science Podcast | data or information resource, narrative resource, podcast | The Science Podcast takes you on a tour of some interesting stories in the journal and online. * MP3 of this show * Transcript of this show * Subscribe to the Science Podcast RSS Feed |
is used by: NIF Data Federation is related to: Integrated Podcasts |
nlx_36122 | SCR_006453 | Science Podcasts | 2026-08-08 11:58:44 | 0 | |||||||||
|
Yeungnam University; North Gyeongsang; South Korea Resource Report Resource Website 1+ mentions |
Yeungnam University; North Gyeongsang; South Korea (RRID:SCR_006575) | university | Private research university located in Gyeongsan, North Gyeongsang, South Korea. University includes colleges of Law and Medicine and teaching hospital. | is parent organization of: Death Domain database | nlx_149484 | http://www.yu.ac.kr/_under/index.html | SCR_006575 | Yeungnam University | 2026-08-08 11:58:59 | 1 | |||||||||
|
SRAdb Resource Report Resource Website 10+ mentions |
SRAdb (RRID:SCR_006524) | SRAdb | software resource | Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: NCBI Sequence Read Archive (SRA) has parent organization: Bioconductor |
PMID:23323543 | Artistic License, v2 | biotools:sradb, OMICS_01032 | https://bio.tools/sradb | SCR_006524 | SRAdb - A compilation of metadata from NCBI SRA and tools | 2026-08-08 11:58:39 | 18 |
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