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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Fly Taxonomy Resource Report Resource Website |
Fly Taxonomy (RRID:SCR_003317) | FB-SP, FBsp | controlled vocabulary, data or information resource | The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase. | obo, taxonomy, organismal |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge has parent organization: FlyBase |
Free, Available for download, Freely available | nlx_157407 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo | SCR_003317 | FlyBase Taxa | 2026-09-12 12:55:56 | 0 | ||||||
|
Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | controlled vocabulary, data or information resource, ontology | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-09-12 12:55:38 | 9 | ||||||
|
EnvO Resource Report Resource Website 10+ mentions |
EnvO (RRID:SCR_000182) | EnvO | controlled vocabulary, data or information resource, ontology | Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material. | biome, environmental feature, environmental material, environment, habitat |
is listed by: BioPortal is related to: Gramene |
The community can contribute to this resource | nlx_153832 | SCR_000182 | Environment Ontology | 2026-09-12 12:55:04 | 20 | |||||||
|
Epoch Clinical Trial Ontology Resource Report Resource Website |
Epoch Clinical Trial Ontology (RRID:SCR_000366) | CTONT | controlled vocabulary, data or information resource, ontology | Ontology of clinical trial terminology. | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157400 | SCR_000366 | 2026-09-12 12:55:08 | 0 | ||||||||
|
Vertebrate Skeletal Anatomy Ontology Resource Report Resource Website |
Vertebrate Skeletal Anatomy Ontology (RRID:SCR_000313) | VSAO | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system. | obo |
is used by: Teleost Anatomy Ontology is listed by: BioPortal |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157624 | SCR_000313 | 2026-09-12 12:55:07 | 0 | ||||||||
|
Research Network and Patient Registry Inventory Ontology Resource Report Resource Website |
Research Network and Patient Registry Inventory Ontology (RRID:SCR_000308) | RNPRIO | controlled vocabulary, data or information resource, ontology | Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries | owl | is listed by: BioPortal | nlx_157575 | SCR_000308 | 2026-09-12 12:55:06 | 0 | |||||||||
|
Information Artifact Ontology Resource Report Resource Website 1+ mentions |
Information Artifact Ontology (RRID:SCR_000477) | IAO | controlled vocabulary, data or information resource, ontology | An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies. | owl, information, ontology |
uses: Ontology for Biomedical Investigations is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Porifera Ontology is related to: Mental Functioning Ontology is related to: Beta Cell Genomics Ontology is related to: Biological Collections Ontology is related to: Chemical Methods Ontology is related to: Influenza Ontology is related to: Ontology for Genetic Interval is related to: Ontology for Parasite LifeCycle is related to: Ontology of Adverse Events is related to: Ontology of Medically Related Social Entities is related to: Population and Community Ontology is related to: Software Ontology is related to: Adverse Event Reporting Ontology is related to: Ontology for Biomedical Investigations |
Free, Available for download, Freely available | nlx_157441 | https://code.google.com/p/information-artifact-ontology/, http://purl.bioontology.org/ontology/IAO, http://purl.obolibrary.org/obo/iao.owl | http://purl.obolibrary.org/obo/iao | SCR_000477 | 2026-09-12 12:55:10 | 2 | ||||||
|
Nursing Interventions Classification Resource Report Resource Website |
Nursing Interventions Classification (RRID:SCR_000911) | NIC | controlled vocabulary, data or information resource, ontology | Ontology of nursing interventions classification. | umls | is listed by: BioPortal | nlx_157512 | SCR_000911 | 2026-09-12 12:55:16 | 0 | |||||||||
|
International Classification of Primary Care - 2 PLUS Resource Report Resource Website |
International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) | ICPC2P | controlled vocabulary, data or information resource, ontology | Ontology of the international classification of primary care -2 PLUS | umls | is listed by: BioPortal | nlx_157454 | SCR_000909 | 2026-09-12 12:55:16 | 0 | |||||||||
|
MeGO Resource Report Resource Website |
MeGO (RRID:SCR_000110) | MeGO | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Gene Ontology dedicated to the functions of mobile genetic elements. The terms defined are used to annotate phage and plasmid protein families in ACLAME. Note: The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up. | phage, plasmid, protein family, mobile genetic element, obo |
is listed by: BioPortal is related to: OBO is related to: AmiGO is related to: Gene Ontology has parent organization: A Classification of Mobile genetic Elements |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156939 | SCR_000110 | Mobile Genetic Element Ontology | 2026-09-12 12:55:03 | 0 | |||||||
|
CHEBI Resource Report Resource Website 100+ mentions |
CHEBI (RRID:SCR_002088) | ChEBI | data or information resource, database | Collection of chemical compounds and other small molecular entities that incorporates an ontological classification of chemical compounds of biological relevance, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms. | complex, conformer, ion, ion pair, isotope, molecular entity, molecule, radical, radical ion, small molecule, obo, gold standard, biochemistry, metabolomics, bio.tools |
uses: IUPAC uses: Nomenclature Committee of IUBMB is used by: Open PHACTS is used by: Ultimate Rough Aggregation of Metabolic Map is used by: RHEA is used by: GEROprotectors is used by: SwissLipids is listed by: OBO is listed by: BioPortal is listed by: NIF Data Federation is listed by: SourceForge is listed by: bio.tools is listed by: Debian is related to: Pathway Commons is related to: Integrated Manually Extracted Annotation has parent organization: European Bioinformatics Institute is parent organization of: Physico-Chemical Process is parent organization of: Physico-Chemical Methods and Properties works with: MiMeDB |
BBSRC BB/G022747/1 | PMID:19854951 PMID:19496059 PMID:17932057 |
Freely available | nif-0000-02655, biotools:chebi, r3d100012626 | http://bioportal.bioontology.org/ontologies/1007, http://www.obofoundry.org/cgi-bin/detail.cgi?id=chebi, ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo, http://chebi.wiki.sourceforge.net/, https://bio.tools/chebi | http://www.ebi.ac.uk/chebi/ | SCR_002088 | CHEBI, Chemical Entities of Biological Interest | 2026-09-12 01:01:24 | 129 | |||
|
Skin Physiology Ontology Resource Report Resource Website |
Skin Physiology Ontology (RRID:SCR_006253) | SPO | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available. | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157589 | SCR_006253 | 2026-09-12 01:00:12 | 0 | ||||||||
|
Physician Data Query Resource Report Resource Website 1+ mentions |
Physician Data Query (RRID:SCR_006833) | PDQ | clinical trial, controlled vocabulary, data or information resource, database, ontology, people resource, registry | NCI''s comprehensive cancer database that contains summaries on a wide range of cancer topics; a registry of 8,000+ open and 19,000+ closed cancer clinical trials from around the world; a directory of professionals who provide genetics services; the NCI Dictionary of Cancer Terms, with definitions for 6,800+ cancer and medical terms; and the NCI Drug Dictionary, which has information on 2,300+ agents used in the treatment of cancer or cancer-related conditions. The PDQ cancer information summaries are peer reviewed and updated monthly by six editorial boards comprised of specialists in adult treatment, pediatric treatment, supportive care, screening and prevention, genetics, and complementary and alternative medicine. The Boards review current literature from more than 70 biomedical journals, evaluate its relevance, and synthesize it into clear summaries. Many of the summaries are also available in Spanish. | adult, pediatric, child, alternative, breast, clinical trial, colorectal, hypercalcemia, legal, lung, medicine, medullary, nausea, ovarian, pain, pathophysiology, pediatric, pharmaceutical, physician, prevention, prognosis, prostate, psychosocial, query, risk factor, screening, social, syndrome, thyroid, treatment, umls, genetics, medical, drug, peer review |
is listed by: BioPortal has parent organization: National Cancer Institute |
Cancer, Cancer-related condition | NCI | nif-0000-21318 | SCR_006833 | PDQ - NCI''s Comprehensive Cancer Database | 2026-09-12 01:00:12 | 2 | ||||||
|
suicideonto Resource Report Resource Website |
suicideonto (RRID:SCR_010452) | suicideo | controlled vocabulary, data or information resource, ontology | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157633 | SCR_010452 | 2026-09-12 01:00:14 | 0 | |||||||||
|
Human Developmental Anatomy Ontology abstract version 2 Resource Report Resource Website |
Human Developmental Anatomy Ontology abstract version 2 (RRID:SCR_010337) | EHDAA2 | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release. | obo | is listed by: BioPortal | nlx_157430 | SCR_010337 | 2026-09-12 01:00:14 | 0 | |||||||||
|
Ontology of Data Mining Investigations Resource Report Resource Website |
Ontology of Data Mining Investigations (RRID:SCR_010394) | ONTODM-KDD | controlled vocabulary, data or information resource, ontology | Ontology for representing data mining investigations. Its goal is to allow the representation of knowledge discovery processes and be general enough to represent the data mining investigations. The ontology is based on the CRISP-DM process methodology. | owl | is listed by: BioPortal | nlx_157527 | SCR_010394 | 2026-09-12 01:00:14 | 0 | |||||||||
|
Traditional Medicine Meridian Value Sets Resource Report Resource Website |
Traditional Medicine Meridian Value Sets (RRID:SCR_010436) | TM-MER | controlled vocabulary, data or information resource, ontology | Ontology of the meridian value set used in the International Classification of Traditional Medicine. | owl | is listed by: BioPortal | nlx_157613 | SCR_010436 | 2026-09-12 01:00:14 | 0 | |||||||||
|
Cell Line Ontology by Mahadevan Resource Report Resource Website |
Cell Line Ontology by Mahadevan (RRID:SCR_010281) | MCCL | controlled vocabulary, data or information resource, ontology | A comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format. | owl, cell line | is listed by: BioPortal | Normal, Pathologic | nlx_157356 | SCR_010281 | Cell Line Ontology (by Mahadevan) | 2026-09-12 01:00:14 | 0 | |||||||
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National Drug File - Reference Terminology Resource Report Resource Website |
National Drug File - Reference Terminology (RRID:SCR_010372) | NDFRT | controlled vocabulary, data or information resource, ontology | Ontology of National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11 | umls | is listed by: BioPortal | nlx_157500 | SCR_010372 | 2026-09-12 01:00:14 | 0 | |||||||||
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Clinical Signs and Symptoms Ontology Resource Report Resource Website |
Clinical Signs and Symptoms Ontology (RRID:SCR_007226) | CSSO | controlled vocabulary, data or information resource, ontology | An ontology for describing clinical signs and symptoms. | owl | is listed by: BioPortal | nlx_157365 | http://mdb.bio.titech.ac.jp/csso | SCR_007226 | 2026-09-12 01:00:13 | 0 |
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