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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Functional Dyspepsia Treatment Trial Resource Report Resource Website |
Functional Dyspepsia Treatment Trial (RRID:SCR_006691) | FDTT | clinical trial, resource | Multi-center, randomized, placebo-controlled trial evaluating the tricyclic antidepressant, amitriptyline and the selective serotonin reuptake inhibitor (SSRI), escitalopram to placebo in patients with functional dyspepsia. The purpose of this study is to determine whether amitriptyline and escitalopram are more efficacious than placebo in relief of the symptoms of functional dyspepsia, adjusting for psychological and psychiatric co-morbidities. | antidepressant, amitriptyline, selective serotonin reuptake inhibitor, escitalopram, placebo |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: ClinicalTrials.gov |
Functional dyspepsia | NIDDK | PMID:22343090 | nlx_152830 | SCR_006691 | SciCrunch Registry | Antidepressant Therapy for Functional Dyspepsia, Functional Dyspepsia Treatment Trial (FDTT) | 2026-09-26 02:19:49 | 0 | |||||
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Segtools Resource Report Resource Website 1+ mentions |
Segtools (RRID:SCR_004394) | software resource, source code | Segtools is a Python package designed to put genomic segmentations back in the context of the genome! Using R for graphics, Segtools provides a number of modules to analyze a segmentation in various ways and help you interpret its biological relevance. Segmentations should be in BED4+ or GFF format, with the ''name'' field of each line used specifying the segment label of that line. The Segtools commands allow you to compare the properties of the segment labels with one another. | has parent organization: University of Washington; Seattle; USA | PMID:22029426 | nlx_40271 | SCR_004394 | SciCrunch Registry | 2026-09-26 02:19:47 | 5 | ||||||||||
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Ben-Gurion University of the Negev; Beer-Sheva; Israel Resource Report Resource Website |
Ben-Gurion University of the Negev; Beer-Sheva; Israel (RRID:SCR_004031) | BGU | institution, university | Public research university in Beersheba, Israel. Ben-Gurion University of the Negev has five campuses: the Marcus Family Campus, Beer Sheva; the David Bergmann Campus, Beer Sheva; the David Tuviyahu Campus, Beer Sheva; the Sede Boqer Campus, and Eilat Campus. |
is parent organization of: TissueNet - The Database of Human Tissue Protein-Protein Interactions is parent organization of: ResponseNet is parent organization of: NetAge Database is parent organization of: LMAS |
nlx_156770 | SCR_004031 | SciCrunch Registry | Ben-Gurion University of the Negev, Ben Gurion University, Ben-Gurion University of the Negev; Beersheva; Israel | 2026-09-26 02:19:47 | 0 | |||||||||
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National Yang-Ming University; Taipei; Taiwan Resource Report Resource Website |
National Yang-Ming University; Taipei; Taiwan (RRID:SCR_004826) | institution, university |
is parent organization of: SET is parent organization of: YM500 is parent organization of: DriverDB is parent organization of: SCAdb: A CANDIDATE GENE DATABASE FOR SPINOCEREBELLAR ATAXIAS |
SCR_004826 | SciCrunch Registry | 2026-09-26 02:19:48 | 0 | |||||||||||||
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ABIDE Resource Report Resource Website 100+ mentions |
ABIDE (RRID:SCR_003612) | ABIDE | data or information resource, data set | Resting state functional magnetic resonance imaging (R-fMRI) datasets from 539 individuals with autism spectrum disorder (ASD) and 573 typical controls. This initiative involved 16 international sites, sharing 20 samples yielding 1112 datasets composed of both MRI data and an extensive array of phenotypic information common across nearly all sites. This effort is expected to facilitate discovery science and comparisons across samples. All datasets are anonymous, with no protected health information included. | phenotype, resting state functional magnetic resonance imaging, mri, image, fmri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: 1000 Functional Connectomes Project has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Autism spectrum disorder, Normal | Leon Levy Foundation ; Joseph P. Healy ; Stavros Niarchos Foundation ; NIMH K23MH087770; NIMH R03MH096321 |
Account required, Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | nlx_157761 | SCR_003612 | SciCrunch Registry | Autism Brain Imaging Data Exchange | 2026-09-26 02:19:46 | 227 | |||||
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GSE13168 Resource Report Resource Website 1+ mentions |
GSE13168 (RRID:SCR_003651) | GSE13168 | data or information resource, data set | Curated data set from a study that assessed the effects of epidermal growth factor and interleukin 1-beta stimulation, and the modulatory effects of glucocorticoids treatment and protein kinase A inhibition, on the airway smooth muscle transcriptome by microarray analysis. The samples from 4 donors were subjected to different stimulations by Il-1b and EGF (or both) with or without pre-treatment with fluticasone, and data was collected at different timepoints. | epidermal growth factor, interleukin 1-beta, glucocorticoid, protein kinase a, airway, smooth muscle, microarray, fluticasone |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Asthma | Free, Public | nlx_157803 | SCR_003651 | SciCrunch Registry | 2026-09-26 02:19:47 | 2 | |||||||
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FSSP - Families of Structurally Similar Proteins Resource Report Resource Website |
FSSP - Families of Structurally Similar Proteins (RRID:SCR_003534) | FSSP | data or information resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented September 6, 2016. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. The database currently contains an extended structural family for each of 330 representative protein chains. Each data set contains structural alignments of one search structure with all other structurally significantly similar proteins in the representative set (remote homologs, below 30%% sequence identity), as well as all structures in the Protein Data Bank with 70-30%% sequence identity relative to the search structure (medium homologs). Very close homologs (above 70 % sequence identity) are excluded as they rarely have marked structural differences. The alignments of remote homologs are the result of pairwise all-against-all structural comparisons in the set of 330 representative protein chains. All such comparisons are based purely on the 3D co-ordinates of the proteins and are derived by automatic (objective) structure comparison programs. The significance of structural similarity is estimated based on statistical criteria. The FSSP database is available electronically and by anonymous ftp (file transfer protocol). | computer algorithm, modular protein design, protein folding, protein structure alignment, protein structure, gold standard | has parent organization: European Bioinformatics Institute | Commission of the European Communities and Human Frontiers Science Program ; EMBO |
PMID:1304898 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_10193 | http://www.sander.ebi.ac.uk/dali/fssp/ | SCR_003534 | SciCrunch Registry | families of structurally similar proteins | 2026-09-26 02:19:46 | 0 | ||||
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Speech Language Disorders Database Resource Report Resource Website |
Speech Language Disorders Database (RRID:SCR_003655) | SLDB | data or information resource, data set | Curated lists of genes associated to speech / language phenotypes and structural or functional abnormalities observed in patient populations. Entrez ID gene information, as well as gene expression profiles from the Allen Brain Atlas are available. You can also download expression data for a given gene in JSON or XML format. | gene, speech, language, phenotype, locus, structure, function, gene expression |
is related to: Allen Human Brain Atlas has parent organization: Boston University; Massachusetts; USA |
Speech disorder, Language disorder | nlx_157808 | SCR_003655 | SciCrunch Registry | Speech/Language Disorders Database, Speech / Language Disorders Database | 2026-09-26 02:19:47 | 0 | |||||||
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Florida State University Program in Neuroscience Resource Report Resource Website |
Florida State University Program in Neuroscience (RRID:SCR_007451) | FSU Neuroscience | graduate program resource, postdoctoral program resource, training resource | The Program in Neuroscience is an independent research and graduate training program at Florida State University, which is a Carnegie Research I university. The Program includes faculty from the departments of Biological Science, Biomedical Science, Mathematics, and Psychology. Its objective is to promote interdisciplinary basic research into neural processes, including the biological mechanisms underlying behavior, and to provide advanced graduate training leading to the Ph.D. degree in Neuroscience. The program maintains specialized research support services and personnel, and provides special courses and symposia on contemporary neuroscience issues. Each semester the program brings to Florida State prominent neuroscientists who give colloquia and hold informal discussions with graduate students and faculty. Neuroscience, the study of brain and nervous system function, encompasses many of the unanswered questions about the nature of humans and other species. It stakes out a territory along the frontier of human knowledge where research can make a real difference to understanding. Traditionally, the primary emphasis of the FSU program has been on sensory processes. This focus is now supplemented by research and instruction in the biophysics and electrophysiology of excitable cells, neurotransmitter and hormone action, neural development and plasticity, circadian rhythms, feeding and regulatory processes, and the genetic bases of neurobiology and behavior. Broad interdisciplinary training is emphasized in the early years so that students develop skills in approaching research problems with multiple levels of analysis, from molecular to behavioral. | has parent organization: Florida State University; Florida; USA | nif-0000-01948 | SCR_007451 | SciCrunch Registry | FSU Program in Neuroscience | 2026-09-26 02:19:49 | 0 | |||||||||
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Omicsoft Sequence Aligner Resource Report Resource Website 1+ mentions |
Omicsoft Sequence Aligner (RRID:SCR_005270) | OSA | commercial organization, software resource | A fast and accurate alignment tool for RNA-Seq data. | alignment, rna-seq | is listed by: OMICtools | Free for academic use, Commercial use requires license | OMICS_01262 | SCR_005270 | SciCrunch Registry | OSA: a super-fast and accurate alignment tool for RNA-Seq data | 2026-09-26 02:19:48 | 4 | |||||||
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GSE8650 Resource Report Resource Website 1+ mentions |
GSE8650 (RRID:SCR_003647) | data or information resource, data set | Curated data set from analyzed gene expression profiles in 19 pediatric patients with SoJIA during the systemic phase of the disease (fever and/or arthritis), 25 SoJIA patients with no systemic symptoms (arthritis only or no symptoms), 39 healthy controls, 94 pediatric patients with acute viral and bacterial infections (available under GSE6269), 38 pediatric patients with Systemic Lupus Erythematosus (SLE), and 6 patients with a second IL-1 mediated disease known as PAPA syndrome. | gene expression profile, gene expression, pediatric, young human |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Inflammatory disease, Systemic-onset Juvenile Idiopathic Arthritis, Healthy control | Free, Public | nlx_157799 | SCR_003647 | SciCrunch Registry | 2026-09-26 02:19:47 | 4 | ||||||||
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Hunter College; New York; USA Resource Report Resource Website |
Hunter College; New York; USA (RRID:SCR_005707) | Hunter | institution, university |
is related to: Clinical and Translational Science Awards Consortium has parent organization: City University of New York; New York; USA is parent organization of: Hunter NMR Spectroscopy Facility is parent organization of: Hunter Genomic Facility is parent organization of: Hunter Nanoscale Analytical Facility is parent organization of: Hunter Bio-Imaging Facility is parent organization of: Hunter Flow Cytometry Facility is parent organization of: Hunter X-ray Diffraction Facility |
SCR_005707 | SciCrunch Registry | Hunter College | 2026-09-26 02:19:48 | 0 | |||||||||||
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University of Sherbrooke; Quebec; Canada Resource Report Resource Website |
University of Sherbrooke; Quebec; Canada (RRID:SCR_003887) | institution, university |
is parent organization of: Universite de Sherbrooke Labs and Facilities is parent organization of: MtbRegList is parent organization of: University of Sherbrooke Hospital Centre; Quebec; Canada is parent organization of: Universite de Sherbrooke Najmanovich Research Group Core Facility |
SCR_003887 | SciCrunch Registry | University of Sherbrooke, Université de Sherbrooke, Universite de Sherbrooke | 2026-09-26 02:19:47 | 0 | ||||||||||||
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University of Connecticut; Connecticut; USA Resource Report Resource Website 1+ mentions |
University of Connecticut; Connecticut; USA (RRID:SCR_003764) | UConn | university | University of Connecticut is a public land-grant research university system with its main campus in Storrs, Connecticut, United States. It was founded in 1881 as the Storrs Agricultural School, named after two benefactors. In 1893, the school became a public land grant college, then took its current name in 1939. |
is related to: Track-A-Worm is parent organization of: SVseq is parent organization of: Research Tissue Repository - University of Connecticut is parent organization of: NRCAM is parent organization of: Minimotif Miner is parent organization of: IsoEM is parent organization of: LASAGNA-Search is parent organization of: University of Connecticut School of Pharmacy is parent organization of: University of Connecticut Labs and Facilities is parent organization of: UConn Analytical Ultracentrifugation Facility is parent organization of: University of Connecticut Flow Cytometry Core Facility is parent organization of: UConn High-Throughput Screening Facility is parent organization of: UConn Microcalorimetry Facility is parent organization of: UConn Nanofabrication Facility is parent organization of: UConn Nuclear Magnetic Resonance Facility is parent organization of: UConn Protein X-Ray Crystallography Facility is parent organization of: Center for Cell Analysis and Modeling is parent organization of: HeteroAnalysis is parent organization of: In vivo - In silico Metabolite Database is parent organization of: pLogo is parent organization of: BioSimulations is parent organization of: EnTAP is parent organization of: University of Connecticut Health Center for Cell Analysis and Modeling Microscopy Core Facility is parent organization of: University of Connecticut Advanced Light Microscopy Core Facility |
, ISNI 0000 0001 0860 4915, GRID grid.63054.34, Wikidata Q49206, Crossref Funder ID 100009073 | https://ror.org/02der9h97 | SCR_003764 | SciCrunch Registry | University of Connecticut | 2026-09-26 02:19:47 | 4 | ||||||||
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VelociMapper Resource Report Resource Website |
VelociMapper (RRID:SCR_005262) | VelociMapper???? | commercial organization, software resource | Accelerated alignment tool for mapping data from next-generation DNA sequencing systems. It runs on TimeLogic''s newest FPGA-based DeCypher J-Series Similarity Search Engine Accelerator to provide fast and reliable results that significantly outperform software-only or GPU-accelerated alternatives. | next-generation sequencing | is listed by: OMICtools | Commercial license | OMICS_00696 | SCR_005262 | SciCrunch Registry | VelociMapper - Accelerated Reference Alignment Mapping Tool | 2026-09-26 02:19:48 | 0 | |||||||
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Resources for Enhancing Alzheimers Caregiver Health Resource Report Resource Website |
Resources for Enhancing Alzheimers Caregiver Health (RRID:SCR_003638) | REACH | data or information resource, data set | Data set from six research sites that examined the feasibility and outcomes of the most promising home and community-based intervention approaches for enhancing family caregiving for Alzheimers Disease (AD) and related disorders (ADRD). A unique feature is the examination of AD burdens and interventions in three ethnic groups (Caucasians, Hispanics, and African Americans). Caregiver/care recipient dyads are entered into the study using standardized eligibility criteria. The dyads are randomized at each intervention site using site-specific procedures. Standardized assessment batteries are administered at baseline, 6, 12, and 18 months. The five general types of REACH interventions are: Individual Information and Support strategies that increase caregivers' understanding of dementia and their particular caregiving situation; Group Support and Family Systems efforts that provide caregivers with multiple forms of social support; Psychoeducational and Skill-Based Training approaches that teach caregivers coping and behavioral management strategies; Home-Based Environmental interventions that modify the home environment's effect on the care recipient and support the caregiver; and Enhanced Technology Systems such as home-centered computer/telephone networks that are designed to reduce caregiver distress and isolation. REACH II was funded in 2001 to test a single multi-component intervention among family caregivers of persons with ADRD, building upon the findings of REACH. Recruitment for REACH II was completed in January 2004 with 642 participants entering the study across 5 participating sites. | longitudinal, minority, caucasian, hispanic, african american, intervention, caregiver, caregiver burden, emotional state, family, health services utilization, health status, home health care, mental disorder, mental health, late adult human, outreach program, psychological wellbeing, questionnaire, anxiety, caregiver health, health behavior, sociodemographic, medication |
is listed by: Inter-university Consortium for Political and Social Research (ICPSR) has parent organization: University of Pittsburgh; Pennsylvania; USA |
Aging, Alzheimer's disease, Alzheimer's related disorder, Dementia, Stress | NIA ; NINR |
nlx_157789 | http://www.edc.pitt/REACH | SCR_003638 | SciCrunch Registry | Resources for Enhancing Alzheimer's Caregiver Health (REACH), Resources for Enhancing Alzheimer's Caregiver Health | 2026-09-26 02:19:46 | 0 | |||||
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Virtual NeuroMorphology Electronic Database Resource Report Resource Website 1+ mentions |
Virtual NeuroMorphology Electronic Database (RRID:SCR_007118) | data or information resource, data set | A database of virtually generated anatomically plausible neurons for several morphological classes, including cerebellar Purkinje cells, hippocampal pyramidal and granule cells, and spinal cord motoneurons. It presently contains 542 cells. In the trade neurons collection the database contains an amaral cell archive, neuron morpho reconstructions, and mouse alpha motoneurons. Their collection of generated neurons include motoneurons, Purkinje cells, and hippocampal pyramidal cells. | neuron, morphology, computational neuroanatomy, neuroanatomy, neuronal reconstruction, neuron model, purkinje cell, motor neuron, ca1, ca3, hippocampal pyramidal cell, axon, hippocampus, triceps surae | has parent organization: George Mason University; Virginia; USA | Human Brain Project ; NINDS R01-NS39600-01 |
Acknowledgement requested | nif-0000-10546 | http://krasnow.gmu.edu/cn3/L-Neuron/database/ http://krasnow1.gmu.edu/L-Neuron/L-Neuron/database/ | SCR_007118 | SciCrunch Registry | LN Database, L-Neuron Database | 2026-09-26 02:19:49 | 1 | ||||||
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OWL API Resource Report Resource Website 10+ mentions |
OWL API (RRID:SCR_005734) | OWL API | software resource, source code | The OWL API is a Java API and reference implementation for creating, manipulating and serializing OWL Ontologies. The latest version of the API is focused towards OWL 2. The OWLAPI underpins ontology browsing and editing tools and platforms such as SWOOP and Protege4. Note that this API, or any other OWL-based API, can be used without an integrated OWL parser if you download a pre-converted OWL file generated from OBO. See OBO Ontologies List for all OBO ontologies converted to OWL (we do not list the full complement of OWL-based APIs here, only those of direct relevance to GO). The OWL API includes the following components: * An API for OWL 2 and an efficient in-memory reference implementation * RDF/XML parser and writer * OWL/XML parser and writer * OWL Functional Syntax parser and writer * Turtle parser and writer * KRSS parser * OBO Flat file format parser * Reasoner interfaces for working with reasoners such as FaCT++, HermiT, Pellet and Racer Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | ontology, owl, api, java, software library, parser, writer |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: University of Manchester; Manchester; United Kingdom has parent organization: SourceForge |
Open unspecified license - Free for academic use; available under either the LGPL or Apache Licenses | nlx_149195 | SCR_005734 | SciCrunch Registry | The OWL API, OWLAPI | 2026-09-26 02:19:48 | 15 | |||||||
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National Gene Vector Biorepository Resource Report Resource Website 10+ mentions |
National Gene Vector Biorepository (RRID:SCR_004760) | NGVB | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Archiving services, insertional site analysis, pharmacology and toxicology resources, and reagent repository for academic investigators and others conducting gene therapy research. Databases and educational resources are open to everyone. Other services are limited to gene therapy investigators working in academic or other non-profit organizations. Stores reserve or back-up clinical grade vector and master cell banks. Maintains samples from any gene therapy related Pharmacology or Toxicology study that has been submitted to FDA by U.S. academic investigator that require storage under Good Laboratory Practices. For certain gene therapy clinical trials, FDA has required post-trial monitoring of patients, evaluating clinical samples for evidence of clonal expansion of cells. To help academic investigators comply with this FDA recommendation, the NGVB offers assistance with clonal analysis using LAM-PCR and LM-PCR technology. | gene therapy, clinical trial, testing, insertion site, gene, clinical, vector, cell line, pharmacology, toxicology, clonal analysis, FASEB list |
is related to: NIDDK Information Network (dkNET) is related to: Phoenix has parent organization: Indiana University School of Medicine; Indiana; USA is parent organization of: NGVB SeqMap Database is parent organization of: NGVB Toxicology Database |
NCRR ; NHLBI |
PMID:31910049 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_76398 | http://www.ngvl.org/, https://www.ngvbcc.org/Home.action | SCR_004760 | SciCrunch Registry | 2026-09-26 02:19:48 | 33 | |||||
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SpliceDB Resource Report Resource Website 1+ mentions |
SpliceDB (RRID:SCR_006262) | SpliceDB | data or information resource, data set | Database of canonical and non-canonical mammalian splice sites. The information about verified splice site sequences for canonical and non-canonical sites is presented with the supporting evidence. Weight matrices were built for the major splice groups, which can be incorporated into gene prediction programs. | gene, expressed sequence tag, splice, canonical, non-canonical, splice site, sequence, data set, splice site sequence |
is listed by: OMICtools is listed by: 3DVC is related to: GenBank has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11125105 PMID:11058137 |
nlx_151853, OMICS_01892 | http://linux1.softberry.com/berry.phtml?topic=splicedb | http://genomic.sanger.ac.uk/spldb/SpliceDB.htm | SCR_006262 | SciCrunch Registry | SpliceDB: canonical and non-canonical splice site sequences in mammalian genes | 2026-09-26 02:19:48 | 2 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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