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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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OpBox Resource Report Resource Website 1+ mentions |
OpBox (RRID:SCR_023269) | software resource, software toolkit | Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects. | OpenBehavior, electrophysiology, simultaneous EEG and EMG acquisition, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0212-20.2020 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=OpBoxPhys | SCR_023269 | 2026-09-12 01:03:04 | 1 | ||||||||
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Open Face Homecage Running Wheel Resource Report Resource Website |
Open Face Homecage Running Wheel (RRID:SCR_023642) | instrument resource, software resource | Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components. | Running wheels for mice, OpenBehavior, instrument, running wheels, 3D printed wheel, | is listed by: OpenBehavior | PMID:36241420 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/running-wheel/ | SCR_023642 | 2026-09-12 01:03:05 | 0 | ||||||||
|
B-CALM Resource Report Resource Website 1+ mentions |
B-CALM (RRID:SCR_023884) | instrument resource, software resource | Open source system for behavioral control based on Arduino Mega microcontroller and MATLAB based graphical interface and analysis code. Behavior controller optimized and customized for associative learning and memory tasks. Provided software should be able to control many different types of hardware for different task configurations. | OpenBehavior, instrument, behavioral controller, associative learning and memory, | is listed by: OpenBehavior | NIAAA R01AA029661; NIMH R00MH118422; NIMH R01MH129582; Scott Alan Myers Endowed Professorship |
PMID:37464151 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/b-calm/ | SCR_023884 | 2026-09-12 01:03:06 | 1 | |||||||
|
RatInABox Resource Report Resource Website 1+ mentions |
RatInABox (RRID:SCR_023682) | software resource, software toolkit | Software Python toolkit for modelling locomotion and neuronal activity in continuous environments. Used to model realistic rodent locomotion and generate synthetic electrophysiological data from spatially modulated cell types. | OpenBehavior, modelling locomotion and neuronal activity, continuous environments, model realistic rodent locomotion, generate synthetic electrophysiological data, spatially modulated cell types, | is listed by: OpenBehavior | DOI:10.1101/2022.08.10.503541 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ratinabox/ | SCR_023682 | 2026-09-12 01:03:05 | 1 | ||||||||
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LabNet Resource Report Resource Website |
LabNet (RRID:SCR_023712) | software application, software resource | Open source software for parallel control over multiple behavioral systems.C++ optimized control layer software to give access to Raspberry Pi connected hardware. Suitable for time critical operations, and to be simple to expand. Used for general automation in experimental laboratories with its control PC located at some distance. | OpenBehavior, parallel control over multiple behavioral systems, C++ optimized control layer, access to Raspberry Pi connected hardware, | is listed by: OpenBehavior | German Research Foundation | PMID:36583654 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/labnet/ | SCR_023712 | 2026-09-12 01:03:05 | 0 | |||||||
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DREAM implant Resource Report Resource Website |
DREAM implant (RRID:SCR_026305) | instrument resource, software resource, source code | Design for chronic electrophysiology implant. Light-weight, can be used in head-fixed or freely moving mice, and is capable of probe recovery for multiple reuses of probes. Includes 3D print designs and step by step instructions for surgery, experimental sessions, and explantation. System includes micro drive, 3D printable Faraday cage, and miniaturized head-fixation system. | OpenBehavior, in-vivo electrophysiology in mice, chronic electrophysiology implant, 3D print design, | is listed by: OpenBehavior | Dutch Research Council ; European Union Seventh Framework Program ; Max Planck Society |
PMID:39141557 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dream-implant/ | SCR_026305 | , Dynamic, Economical, Adaptable, and Modular implant, Recoverable | 2026-09-12 01:05:01 | 0 | ||||||
|
High-Precision Optical Fiber-Based Lickometer Resource Report Resource Website |
High-Precision Optical Fiber-Based Lickometer (RRID:SCR_026392) | instrument resource, software resource, source code | Low-cost open-source lickometer that combines restricted infrared beam defined by optical fibers, with poke design that allows easy access to the tongue while limiting access of other body parts and external light sources. This device also includes features for detecting nose pokes and presenting visual cues during behavioral tasks. Used to study lick microstructure in combination with other techniques, such as imaging of neural activity, in freely moving mice. | OpenBehavior, licking behavior, device, detecting nose pokes, presenting visual cues during behavioral tasks, study lick microstructure, imaging of neural activity, freely moving mice, | is listed by: OpenBehavior | PMID:39025674 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/optical-fiber-based-lickometer/ | SCR_026392 | 2026-09-12 01:05:03 | 0 | ||||||||
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Bell Jar Resource Report Resource Website |
Bell Jar (RRID:SCR_026912) | software application, software resource, source code | Software mouse brain histology tool for neuroscientists. Semiautomated registration and cell counting tool for mouse neurohistology analysis. | neurohistology analysis, mouse brain, mouse brain histology, | is listed by: OpenBehavior | PMID:39909716 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/bell-jar/, https://github.com/asoronow/belljar/blob/main/docs/belljar_guide.pdf, | SCR_026912 | 2026-09-12 01:05:14 | 0 | ||||||||
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Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats Resource Report Resource Website |
Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) | instrument resource | Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant. | OpenBehavior, low-cost implant, diaphragm EMG implant, diaphragm EMG recordings, awake, behaving rats, electromyography, | is listed by: OpenBehavior | PMID:39890457 | https://edspace.american.edu/openbehavior/project/an-implant-for-diaphragm-emg-recordings-in-awake-rats/ | SCR_026968 | 2026-09-12 01:05:16 | 0 | |||||||||
|
Autonomous Training of a Forelimb Motor Task Resource Report Resource Website |
Autonomous Training of a Forelimb Motor Task (RRID:SCR_021603) | software resource, source code | Software Python tool running on Raspberry Pi computer. Used for trial timing and data logging. Part of Autonomous Training of Forelimb Motor Task system. | Custom Python tool, task difficulty, trial timing, data logging, OpenBehavior |
is listed by: OpenBehavior is related to: Autonomous Training of a Forelimb Motor Task project |
DOI:10.1152/jn.00115.2017 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autonomous-training-forelimb-motor-task/ | SCR_021603 | 2026-09-12 01:04:12 | 0 | ||||||||
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Operant Box for Auditory Tasks Resource Report Resource Website |
Operant Box for Auditory Tasks (RRID:SCR_021604) | software resource, source code | Software tool as part of Operant Box for Auditory Tasks system. | Operant Box, Auditory Tasks, OpenBehavior |
is listed by: OpenBehavior is related to: Operant Box for Auditory Tasks project |
DOI:10.3758/s13428-017-0906-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/operant-box-auditory-tasks-obat/ | SCR_021604 | 2026-09-12 01:04:12 | 0 | ||||||||
|
GoFish Ajuwon etal 2022 Resource Report Resource Website 1+ mentions |
GoFish Ajuwon etal 2022 (RRID:SCR_022511) | software resource, source code | Bonsai code for running GOFish platform for behavioural experiments in fish. | Bonsai code, running GOFish platform, behavioural experiments in fish, OpenBehavior | is listed by: OpenBehavior | DOI:10.1101/2022.04.04.486957 | Free, Available for download, Freely available | SCR_022511 | GoFish_Ajuwon_etal_2022 | 2026-09-12 01:04:18 | 2 | ||||||||
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One-rat Turnstile Resource Report Resource Website |
One-rat Turnstile (RRID:SCR_025570) | ORT | instrument resource | Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data. | OpenBehavior, apparatus, continuous individual monitoring, training, testing, rat, without removing from social environment, | is listed by: OpenBehavior | PMID:38557586 | SCR_025570 | One-rat Turnstile (ORT) | 2026-09-12 01:04:47 | 0 | ||||||||
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TD_Drive Resource Report Resource Website |
TD_Drive (RRID:SCR_025672) | instrument resource, software resource, source code | Parametric, open-source implant for multi-area electrophysiological recordings in behaving and sleeping rats. 3D-printable implant for rats, capable of symmetric, bilateral wire electrode recordings, currently in up to six distributed brain areas simultaneously. | OpenBehavior, 3D-printable implant, implant, device, multi-area electrophysiological recordings, behaving and sleeping rats, | is listed by: OpenBehavior | Dutch Research Council | PMID:38738884 | https://edspace.american.edu/openbehavior/project/tddrive/ | SCR_025672 | TD Drive, The TD Drive | 2026-09-12 01:04:49 | 0 | |||||||
|
Holeboard Resource Report Resource Website |
Holeboard (RRID:SCR_025988) | instrument resource, software resource, source code | Open-source holeboard for studying rodent behavior. Used in neuroscience for assessing exploration, anxiety, and spatial memory in rodents. The project provides a cost-effective solution, offering detailed instructions on sensor integration, circuit assembly, and Arduino programming for conducting experiments. Design files and other details are available on GitHub. | holeboard, infrared sensors, detect behavioral patterns in rodents, assessing exploration, anxiety, spatial memory, | is listed by: OpenBehavior | https://edspace.american.edu/openbehavior/project/holeboard/ | SCR_025988 | 2026-09-12 01:04:55 | 0 | ||||||||||
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HSSM Resource Report Resource Website 1+ mentions |
HSSM (RRID:SCR_026356) | software resource, software toolkit, source code | Software Python toolbox for fitting Hierarchical Sequential Sampling Models using Bayesian methods. | OpenBehavior, fitting Hierarchical Sequential Sampling Models, Hierarchical Sequential Sampling Models, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/hssm/ | SCR_026356 | Hierarchical Sequential Sampling Models | 2026-09-12 01:05:02 | 1 | ||||||||
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Synaptic Vesicles Detection Resource Report Resource Website 10+ mentions |
Synaptic Vesicles Detection (RRID:SCR_024910) | data processing software, image analysis software, software application, software resource, source code | Software tool as Python based synaptic vesicle classifier algorithm to identify neurotransmitter vesicles in electron microscopy images using Pytorch. | OpenBehavior, synaptic vesicle classifier algorithm, identify neurotransmitter vesicles, electron microscopy images |
uses: PyTorch is listed by: OpenBehavior |
PMID:34983830 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/synaptic-vesicles-detection-and-localization/ | SCR_024910 | 2026-09-12 01:04:33 | 12 | ||||||||
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3DP Gustometer Resource Report Resource Website |
3DP Gustometer (RRID:SCR_025010) | instrument resource, software resource, source code | 3D printed pacifier shaped mouthpiece for fMRI compatible gustometers to deliver up to eight liquids during fMRI task. Can be utilized to study flavor, taste reactivity, reward or punishment with food, conditioning, and neurodegenerative conditions such as Alzheimers and Parkinsons, since taste and smell senses diminish early into disease acquisition. | OpenBehavior, pacifier shaped mouthpiece, 3D printed mouthpiece, mouthpiece, 3D mouthpiece with fMRI-compatible gustometer, | is listed by: OpenBehavior | PMID:34551958 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/3dp-gustometer/ | SCR_025010 | 3D Printed Gustometer | 2026-09-12 01:04:35 | 0 | |||||||
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Pipette Finding CNN Resource Report Resource Website |
Pipette Finding CNN (RRID:SCR_024992) | software resource, source code | Software application for convolutional neural network that assesses pipette positioning before patch clamp is begun to minimize patch clamping errors in electrophysiology experiments. Used for detecting pipette positioning and making patch clamping procedures. | OpenBehavior, convolutional neural network, pipette positioning assessement, minimize patch clamping errors, electrophysiology experiments, detecting pipette positioning, making patch clamping procedures, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pipette-finding-cnn/ | SCR_024992 | Pipette Finding Convolutional Neural Network | 2026-09-12 01:04:35 | 0 | ||||||||
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SEB3R Resource Report Resource Website |
SEB3R (RRID:SCR_025161) | SEB3R | software application, software resource, source code | Software tool to automate and standardize ethologically driven observation of freely moving mice. Identifies different postures of mice and associates them with emotions, offering detailed analysis of their movements frame by frame. Used for tracking mouse body language and studying emotional behaviors. | OpenBehavior, rodents behavioral tracking in 3D, automate and standardize ethologically driven observation, freely moving mice, tracking mouse body language, emotional behavior, |
is listed by: OpenBehavior has parent organization: University of Trento; Trento; Italy |
PMID:37648448 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/seb3r/ | SCR_025161 | Stimulus Evoked Behavioral tracking in 3D for Rodents | 2026-09-12 01:04:38 | 0 |
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