Tools   Select Another Resource Report Type

https://genome.sph.umich.edu/wiki/EMMAX

Software statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only a small fraction of complex traits, which allows us to avoid repetitive variance component estimation procedure, resulting in a significant amount of increase in computational time of association mapping using mixed model.

Proper citation: EMMAX (RRID:SCR_024012) Copy   

•   Source: SciCrunch Registry

https://www.leicabiosystems.com/en-be/histology-equipment/he-slide-stainers-special-stainers-coverslippers/leica-st5010/

Leica ST5010 Autostainer XL provides reproducible, consistent high quality staining, and increased workload throughput compared to manual staining.

Proper citation: Leica: Autostainer ST5010 XL (RRID:SCR_023957) Copy   

•   Source: SciCrunch Registry

http://www.dicompyler.com/

Software extensible open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform DICOM RT viewer.

Proper citation: dicompyler (RRID:SCR_024006) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/foreign/index.html

Software tool for reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files.

Proper citation: foreign (RRID:SCR_024025) Copy   

•   Source: SciCrunch Registry

https://www.nrel.gov/grid/wind-toolkit.html

United States national wind dataset. Provides high spatial and temporal resolution wind power, wind power forecast, and meteorological data for 7-year period at over 126,000 locations throughout continental United States. The largest publicly available wind power data set in the world. Used for wind energy integration studies. It is accessible through Web-based API.

Proper citation: Wind Integration National Dataset Toolkit (RRID:SCR_023782) Copy   

•   Source: SciCrunch Registry

https://mass-spec.stanford.edu/instruments

Agilent 6495C triple quadrupole LC/MS system increases capacity and sensitivity for targeted quantitation applications. Used to investigate more diverse and biologically relevant groups of targeted peptides, small molecules and metabolites in single experiment without compromising sensitivity, quantitative accuracy, or linearity.

Proper citation: Agilent: 6495 Triple Quadrupole LC/MS (RRID:SCR_023937) Copy   

•   Source: SciCrunch Registry

https://github.com/rrwick/Deepbinner

Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads.

Proper citation: Deepbinner (RRID:SCR_024001) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/thunder-imaging-systems/p/thunder-imager-3d-live-cell/

Advanced widefield microscope enabling use of 3D specimens with camera based fluorescence microscopes. System ensures low phototoxicity and photobleaching, i.e., higher throughput with optimal conditions.

Proper citation: Leica: Thunder Imager Live Cell system (RRID:SCR_023794) Copy   

•   Source: SciCrunch Registry

https://www.ulethbridge.ca/

University of Lethbridge with campuses in Lethbridge and Calgary, is one of Canada"s leading research institutions.

Proper citation: University of Lethbridge; Alberta; Canada (RRID:SCR_023792) Copy   

•   Source: SciCrunch Registry

https://www.eneuro.org/content/9/5/ENEURO.0099-22.2022

Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed.

Proper citation: Customized Guide Cannulas (RRID:SCR_023941) Copy   

•   Source: SciCrunch Registry

https://github.com/Nexusger/AllenMouseBrainImageLoader

Respository contains two small software tools which render annotation and images of the Allen Mouse Brain Atlas. Both tools generate 1304 images of the Mouse Brain (456 sagital, 528 coronal and 320 axial).

Proper citation: Allen Mouse Brain ImageLoader (RRID:SCR_023827) Copy   

•   Source: SciCrunch Registry

https://www.ambulatory-monitoring.com/pvt-192-psychomotor-vigilance-monitor

System includes PVT-192 monitor and REACT software. Used for reaction time testing for long-term, large-scale testing of vigilance, effects of sleep deprivation, and drug effects. Used for PVT test wherever measures of performance or sleepiness effects are needed.

Proper citation: Ambulatory Monitoring: Psychomotor Vigilance Task system (RRID:SCR_024213) Copy   

•   Source: SciCrunch Registry

https://codemeta.github.io/codemeta-generator/

Web application that creates CodeMeta files.

Proper citation: CodeMeta Generator (RRID:SCR_024601) Copy   

•   Source: SciCrunch Registry

https://www.softwareheritage.org/

Software Heritage provides service for archiving and referencing historical and contemporary software with focus on human readable source code. The site was unveiled in 2016 by Inria and is supported by UNESCO. The project itself is structured as non‑profit multi‑stakeholder initiative.

Proper citation: Software Heritage (RRID:SCR_024602) Copy   

•   Source: SciCrunch Registry

https://ebrc.org/

Non-profit, public-private partnership dedicated to bringing together inclusive community committed to advancing engineering biology to address national and global needs. We showcase cutting-edge research in engineering biology, identify pressing challenges and opportunities in research and application, articulate compelling research roadmaps and programs to address them, and provide timely access to other key developments in engineering biology.

Proper citation: Engineering Biology Research Consortium (RRID:SCR_024578) Copy   

•   Source: SciCrunch Registry

https://www.eneuro.org/content/10/8/ENEURO.0212-23.2023

Simple, lightweight, and low cost customizable multielectrode array for Local Field Potential recordings. Used to collect LFP data from different brain regions simultaneously in rats. Can be modified to record single unit and multiunit activity in addition to LFP activity using both wired and wireless neural data acquisition systems.

Proper citation: Customizable Multielectrode Array (RRID:SCR_024551) Copy   

•   Source: SciCrunch Registry

https://xdd.wisc.edu/

Software digital library and cyberinfrastructure facilitating discovery and utilization of data and knowledge in published documents.

Proper citation: XDD (RRID:SCR_024434) Copy   

•   Source: SciCrunch Registry

https://de.caeonline.com/buy/lab-equipment-and-accessories/tecan-infinite-m200/9076657

TECAN Infinite M200 is laboratory device and accessory for multiplex luminescence and fluorescence applications. Device features automated robotic arm for dispensing samples or reagents onto cuvettes or microplates, as well as range of high speed and throughput sample injection capabilities. Infinite M200 is integrated with TECAN's proven laser-based multi-channel detection technology, to measure multiple biological responses simultaneously. System features graphical user interface to configure instrument for single or multiple sample injection processes. Accommodates range of different cuvette and microplate vessels, suitable for both 1.5ml and 0.2ml tubes as well as plates up to 384 wells. Multichannel optical detector can detect up to four different signals in parallel, with wide range of detection wavelengths. Designed for high-throughput applications with sensitive fluorescence and luminescence. Features automated sample injection unit that enables hands-free operation of 96 or 1,536 up to eight-channel multipoint experiments, providing maximum flexibility. Comes with range of software, including intuitive data collection and analysis interface. Designed with automated calibration settings, providing reliable, accurate and reproducible results.

Proper citation: Tecan: Infinite M200 (RRID:SCR_024560) Copy   

•   Source: SciCrunch Registry

https://www.tecan.com/customer-news/tecan-granted-patent-for-revolutionary-nanoquant-plate-2117

Device designed for simultaneous measurement of multiple low volume samples. Consists of 16 precision manufactured quartz optics in user friendly format, offering precise, straightforward absorbance and fluorescence based measurements from sample volumes as low as 2 µl. Combined with Tecan’s Infinite series readers – the Infinite 200 PRO, Infinite F500 and Infinite M1000 PRO – the NanoQuant Plate provides solution for DNA or RNA quantification, allowing detection of concentrations down to 1 ng/µl for wide variety of applications.

Proper citation: Tecan: NanoQuantPlate (RRID:SCR_024561) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/confocal-microscopes/p/leica-tcs-sp8-dls/

Digital LightSheet full confocal with gentle single plane illumination microscope for easy light sheet imaging. TwinFlect mirror deflects illuminating light sheet at 90° angle, which allows integration of illumination and detection beam path into vertical axis of every inverted, Leica TCS SP8 confocal.

Proper citation: Leica: TCS SP8 DLS LightSheet microscope (RRID:SCR_024563) Copy   

•   Source: SciCrunch Registry