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https://cellarium.ai

Software platform to annotate cell types.

Proper citation: Cellarium (RRID:SCR_025438) Copy   

•   Source: SciCrunch Registry

https://www.prisma-statement.org/protocols

Reporting guideline published in 2015 and aiming to facilitate the development and reporting of systematic review protocols.

Proper citation: PRISMA-P (RRID:SCR_025439) Copy   

•   Source: SciCrunch Registry

https://www.leicabiosystems.com/ihc-ish/ihc-ish-instruments/bond-rx/

Fully automated research stainer that automates staining step which ensures that microscope slides are produced with consistent, reproducible, and efficient way. Utilizes biological assay called immunohistochemistry.BOND RX model expands on the capabilities of IHC by including other assays.

Proper citation: Leica: BOND RX Stainer (RRID:SCR_025548) Copy   

•   Source: SciCrunch Registry

https://www.bio-rad.com/en-pt/product/tc20-automated-cell-counter?ID=M7FBG34VY

Automated cell counter accurately counts cells in one simple step using auto-focus technology and cell-counting algorithm. Enables accurate cell counting in less than 30 seconds.

Proper citation: Bio-Rad: TC20 Automated Cell Counter (RRID:SCR_025462) Copy   

•   Source: SciCrunch Registry

https://www.techno-path.com/product/biologs-omnilog-pm-system/

Instrument that runs Biolog's microplate metabolic arrays. Incubates and monitors 50 microplates, or 1,920 phenotypic assays simultaneously to measure physiological responses in diverse microbial cells. OmniLog PM system includes software for analysis of Biolog Phenotype MicroArray panels.

Proper citation: Technopath: Biolog OmniLog PM System (RRID:SCR_025463) Copy   

•   Source: SciCrunch Registry

https://nwbinspector.readthedocs.io/en/dev/

Software Python-based package designed to asses quality of Neurodata Without Borders files and based on compliance with Best Practice. Meant as companion to PyNWB validator, which checks for strict schema compliance. Attempts to apply some commonsense rules and heuristics to find data components of file that pass validation, but are probably incorrect, or suboptimal, or deviate from best practices. In other words, while PyNWB validator focuses on compliance of structure of file with the schema, the inspector focuses on compliance of actual data with best practices. Meant as data review aid. It does not catch all best practice violations, and any warnings it does produce should be checked by knowledgeable reviewer.

Proper citation: NWB Inspector (RRID:SCR_025465) Copy   

•   Source: SciCrunch Registry

https://www.versiti.org/versiti-blood-research-institute?utm_source=google&utm_medium=organic&utm_campaign=google-my-business&utm_content=Yext

Versiti Blood Research Institute is national leader in innovative blood health solutions. Provides blood and blood products to hospitals and collects blood annually. Investigators study blood disorders like hemophilia, blood cancers like leukemia, and other blood diseases.

Proper citation: Versiti Blood Research Institute (RRID:SCR_025504) Copy   

•   Source: SciCrunch Registry

https://www.bio-rad.com/es-es/product/bio-plex-magpix-multiplex-reader?ID=M3VE8D15

Compact reader for analysis of up to 50 analytes in single sample.Designed to read assays developed on magnetic xMap (MagPlex) beads and comes with Bio-Plex Manager analysis software. Bio-Plex MAGPIX Multiplex Reader is now discontinued. Bio-Rad will continue to provide premium Luminex instrumentation: the Bio-Plex® 200 System and Bio-Plex® 3D Suspension Array System and service, support, accessories, and software for customers with the Bio-Plex MAGPIX Multiplex Reader.

Proper citation: Bio-Rad: Bio-Plex MAGPIX Multiplex Reader (RRID:SCR_025645) Copy   

•   Source: SciCrunch Registry

https://stoeltingco.com/Neuroscience/Touch-Test-Sensory-Probes~9834

Semmes-Weinstein Von Frey Aesthesiometer for touch assessment. The Semmes-Weinstein monofilaments provide an approximate logarithmic scale of actual force, and a linear scale of perceived intensity. They have a long history of effective use in clinical settings, and can be used to diagnose pathologies of hyper- or hypo-aesthesia. Subsets within the set of 20 probes distinguish pathologies on different parts of the body (foot, hand, lip, cheek,etc.).

Proper citation: Stoelting: Touch Test Sensory Probes (RRID:SCR_025646) Copy   

•   Source: SciCrunch Registry

https://www.cytivalifesciences.com/en/us/shop/protein-analysis/spr-label-free-analysis/spr-systems/biacore-x100-p-05730

Automated system for comprehensive, label-free analysis and characterization of biomolecular interactions in real-time. Can be used for applications, including structure function studies, pathway analysis, biomarker discovery and validation, drug target identification and validation, and assay development.

Proper citation: Cytiva: Biacore X100 (RRID:SCR_025586) Copy   

•   Source: SciCrunch Registry

https://academic.oup.com/biostatistics/article/23/4/1200/6561796

Software for multi-omic data integration. Used to jointly decompose multiple biologically related experimental data sets with biological and technological relationships that can be structured into the decomposition.

Proper citation: 2s-LCA (RRID:SCR_025613) Copy   

•   Source: SciCrunch Registry

https://academic.oup.com/bioinformatics/article/35/12/2159/5184284

Algorithm for regulatory network inference using gradient boosting, based on GENIE3 architecture. Used for inference of gene regulatory networks.

Proper citation: GRNBoost2 (RRID:SCR_025614) Copy   

•   Source: SciCrunch Registry

https://github.com/Cloud-SPAN

Cloud-based high performance computing for specialised analyses on environmental omics.

Proper citation: Cloud-SPAN (RRID:SCR_025594) Copy   

•   Source: SciCrunch Registry

https://www.boisestate.edu/

Public research university in Boise, Idaho. Founded in 1932 by the Episcopal Church, it became independent junior college in 1934 and has been awarding baccalaureate and masters degrees since 1965. It became public institution in 1969.

Proper citation: Boise State University; Idaho; USA (RRID:SCR_024730) Copy   

•   Source: SciCrunch Registry

https://www.ika.com/en/Products-LabEq/Shakers-pg179/MTS-24-digital-microtiter-shaker-3208000/

Special orbital shaker for shaking two or four microtiter plates.

Proper citation: IKA: MTS 2/4 digital microtiter shaker (RRID:SCR_024726) Copy   

•   Source: SciCrunch Registry

https://scikit-learn.org/stable/modules/generated/sklearn.svm.LinearSVC.html

Software application for linear support vector classification. Used in classification problems.

Proper citation: LinearSVC (RRID:SCR_024741) Copy   

•   Source: SciCrunch Registry

https://github.com/CahanLab/singleCellNet

Software tool to classify single cell RNA-Seq data across platforms and across species.

Proper citation: SingleCellNet (RRID:SCR_024742) Copy   

•   Source: SciCrunch Registry

https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MCFLIRT

Software intra-modal motion correction tool designed for use on fMRI time series for linear (affine) inter- and inter-modal brain image registration.

Proper citation: MCFLIRT (RRID:SCR_024792) Copy   

•   Source: SciCrunch Registry

https://www.une.edu/

Private research university in Maine with campuses in Portland and Biddeford, as well as study abroad campus in Tangier, Morocco.

Proper citation: University of New England; Biddeford; USA (RRID:SCR_024794) Copy   

•   Source: SciCrunch Registry

https://github.com/liufan-creat/bulkGAN

Software tool for scRNA and spatial transcriptomics.Used to generate RNA data close to real bulk RNA-seq with constraints of scRNA-seq data, based on keras and tensflow framework.

Proper citation: bulkGAN (RRID:SCR_024798) Copy   

•   Source: SciCrunch Registry