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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Proteomics Data and Process Provenance Ontology Resource Report Resource Website |
Proteomics Data and Process Provenance Ontology (RRID:SCR_010414) | PROPREO | controlled vocabulary, data or information resource, ontology | A comprehensive proteomics data and process provenance ontology. | owl | is listed by: BioPortal | nlx_157562 | SCR_010414 | 2026-09-12 12:57:19 | 0 | |||||||||
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Provenance Ontology Resource Report Resource Website 10+ mentions |
Provenance Ontology (RRID:SCR_010415) | PROVO | controlled vocabulary, data or information resource, ontology | Ontology that expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2) providing a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains. | owl | is listed by: BioPortal | nlx_157563 | SCR_010415 | PROV-O | 2026-09-12 12:57:19 | 10 | ||||||||
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Quantitative Imaging Biomarker Ontology Resource Report Resource Website |
Quantitative Imaging Biomarker Ontology (RRID:SCR_010417) | QIBO | controlled vocabulary, data or information resource, ontology | An ontology that describes various concepts in quantitative imaging biomarkers. | owl | is listed by: BioPortal | nlx_157565 | SCR_010417 | 2026-09-12 12:57:19 | 0 | |||||||||
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Non-Randomized Controlled Trials Ontology Resource Report Resource Website |
Non-Randomized Controlled Trials Ontology (RRID:SCR_010380) | NONRCTO | controlled vocabulary, data or information resource, ontology | Ontology to help the systematic review and meta-analysis process of non randomized clinical trials. | owl | is listed by: BioPortal | nlx_157510 | SCR_010380 | 2026-09-12 12:57:18 | 0 | |||||||||
|
Nursing Care Coordination Ontology Resource Report Resource Website |
Nursing Care Coordination Ontology (RRID:SCR_010381) | NCCO | controlled vocabulary, data or information resource, ontology | Ontology that contains activities that nurses use while coordinating care among patients. | owl | is listed by: BioPortal | nlx_157511 | SCR_010381 | 2026-09-12 12:57:18 | 0 | |||||||||
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Ontological Knowledge Base Model for Cystic Fibrosis Resource Report Resource Website |
Ontological Knowledge Base Model for Cystic Fibrosis (RRID:SCR_010382) | ONTOKBCF | controlled vocabulary, data or information resource, ontology | An ontological knowledge base model for cystic fibrosis. There are molecular genetic information (i.e. gene mutations) and health information included in OntoKBCF. The purposes of OntoKBCF include management of molecular genetic information and health information and embedding OntoKBCF into EHR settings. | owl | is listed by: BioPortal | Cystic fibrosis | nlx_157513 | SCR_010382 | 2026-09-12 12:57:18 | 0 | ||||||||
|
Ontology for Genetic Disease Investigations Resource Report Resource Website |
Ontology for Genetic Disease Investigations (RRID:SCR_010385) | OGDI | controlled vocabulary, data or information resource, ontology | Ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) . | owl | is listed by: BioPortal | nlx_157516 | SCR_010385 | 2026-09-12 12:57:18 | 0 | |||||||||
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Immune Disorder Ontology Resource Report Resource Website |
Immune Disorder Ontology (RRID:SCR_010344) | IMMDIS | controlled vocabulary, data or information resource, ontology | Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc. | obo, health, immunology | is listed by: BioPortal | NIAID ; Division of Allergy Immunology and Transplantation |
nlx_157438 | SCR_010344 | 2026-09-12 12:57:17 | 0 | ||||||||
|
InterNano Nanomanufacturing Taxonomy Resource Report Resource Website 1+ mentions |
InterNano Nanomanufacturing Taxonomy (RRID:SCR_010346) | InterNano | controlled vocabulary, data or information resource, ontology | A custom-built terminology to describe the nanomanufacturing enterprise. | owl | is listed by: BioPortal | NSF CMMI-1025020 | nlx_157442 | SCR_010346 | 2026-09-12 12:57:17 | 1 | ||||||||
|
Interaction Network Ontology Resource Report Resource Website 1+ mentions |
Interaction Network Ontology (RRID:SCR_010347) | INO | controlled vocabulary, data or information resource, ontology | An ontology in the domain of interaction network that aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It is aimed to represent general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO was initiated by supporting literature mining related to interactions and interaction networks. INO aligns with BFO. INO is a community-based ontology, and its development follows the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157443 | SCR_010347 | 2026-09-12 12:57:17 | 2 | |||||||||
|
International Classification of Diseases Version 10 Resource Report Resource Website 1+ mentions |
International Classification of Diseases Version 10 (RRID:SCR_010349) | ICD10 | controlled vocabulary, data or information resource, ontology | Ontology of the International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva, a medical classification list by the World Health Organization (WHO). | umls | is listed by: BioPortal | nlx_157448 | SCR_010349 | 2026-09-12 12:57:17 | 3 | |||||||||
|
International Classification of Diseases Version 10 - Procedure Coding System Resource Report Resource Website 1+ mentions |
International Classification of Diseases Version 10 - Procedure Coding System (RRID:SCR_010351) | ICD10PCS | controlled vocabulary, data or information resource, ontology | Ontology of the International Classification of Diseases Version 10, ICD-10-PCS (Procedure Coding System), 2009. | umls | is listed by: BioPortal | nlx_157450 | SCR_010351 | 2026-09-12 12:57:17 | 4 | |||||||||
|
MR dataset acquisition Resource Report Resource Website |
MR dataset acquisition (RRID:SCR_010352) | ONL-MR-DA | controlled vocabulary, data or information resource, ontology | Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeneous resources in neuroimaging. In particular, it includes a multi-axial classification of MR sequences. | owl neuroimaging, mri, data acquisition, mri protocol, mri sequence parameter | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157461 | SCR_010352 | 2026-09-12 12:57:17 | 0 | ||||||||
|
Metagenome and Microbes Environmental Ontology Resource Report Resource Website |
Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) | MEO | controlled vocabulary, data or information resource, ontology | Ontology for organismal habitats (especially focused on microbes) | owl | is listed by: BioPortal | nlx_157476 | SCR_010359 | 2026-09-12 12:57:18 | 0 | |||||||||
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Minimal Information about any Sequence Controlled Vocabularies Resource Report Resource Website |
Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) | MIXSCV | controlled vocabulary, data or information resource, ontology | Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists. | obo | is listed by: BioPortal | nlx_157481 | SCR_010363 | Minimal Information about any Sequence (MIxS) Controlled Vocabularies, MIxS Controlled Vocabularies | 2026-09-12 12:57:18 | 0 | ||||||||
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Gene Regulation Ontology Resource Report Resource Website |
Gene Regulation Ontology (RRID:SCR_010590) | GRO, BOOTStrep | controlled vocabulary, data or information resource, ontology | Ontology that is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of). | owl, genomic, proteomic, biological process, gene regulation, gene expression, gene, transcription factor, process, molecule, biological_process |
is listed by: BioPortal is listed by: OBO has parent organization: European Bioinformatics Institute |
nlx_157415, nlx_46399 | http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html, http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO_latest | SCR_010590 | Gene Regulation Ontology - Ontological resource from the BOOTStrep project for the representation of gene regulation events | 2026-09-12 12:57:21 | 0 | |||||||
|
Plant Trait Ontology Resource Report Resource Website |
Plant Trait Ontology (RRID:SCR_003461) | PTO, TO | controlled vocabulary, data or information resource, ontology | A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part. | obo, phenotype, trait |
is listed by: BioPortal is listed by: OBO has parent organization: Gramene |
nlx_157556 | http://purl.bioontology.org/ontology/PTO, http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=co, http://www.gramene.org/plant_ontology/index.html#to, http://www.gramene.org/plant_ontology/ | SCR_003461 | 2026-09-12 12:55:58 | 0 | ||||||||
|
Suggested Ontology for Pharmacogenomics Resource Report Resource Website |
Suggested Ontology for Pharmacogenomics (RRID:SCR_003497) | SOPHARM, SO-Pharm | controlled vocabulary, data or information resource, ontology | A domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. It articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables the representation of pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables the representation of a patient and more largely a panel included in trials, and populations. SO-Pharm enables the representation of measured items on patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains. | owl, pharmacogenomics, health, pathological, molecular, cellular, organismal, multi-organismal, drug, genomic variation, phenotype, trait, hypothesis, case study, investigation |
is listed by: BioPortal is listed by: OBO has parent organization: University of Lorraine; Lorraine; France |
nlx_157597 | http://purl.bioontology.org/ontology/SOPHARM, SO-Pharm, http://purl.oclc.org/NET/loria/sopharm/owl/sopharm | SCR_003497 | 2026-09-12 12:55:59 | 0 | ||||||||
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Physico-Chemical Process Resource Report Resource Website |
Physico-Chemical Process (RRID:SCR_003530) | REX | controlled vocabulary, data or information resource, ontology | An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. It includes both microscopic processes (involving molecular entities or subatomic particles) and macroscopic processes. Some biochemical processes from Gene Ontology (GO Biological process) can be described as instances of REX. | obo, physico-chemical process, physico-chemical, microscopic process, molecular entity, subatomic particle, macroscopic process, biochemical process |
is listed by: BioPortal is listed by: OBO is related to: Gene Ontology has parent organization: CHEBI |
nlx_157639 | http://purl.bioontology.org/ontology/MO, ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/rex.obo, http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=REX | http://www.ebi.ac.uk/~kirill/REX/ | SCR_003530 | Physico-Chemical Process (REX) | 2026-09-12 12:55:59 | 0 | ||||||
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Software Ontology Resource Report Resource Website 1+ mentions |
Software Ontology (RRID:SCR_003493) | SWO | controlled vocabulary, data or information resource, ontology | An ontology for describing software tools, their types, tasks, versions, provenance and data associated (the input and output data types and the uses the software can be put to). | owl, software, provenance, version, ontology |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge is related to: Information Artifact Ontology has parent organization: European Bioinformatics Institute has parent organization: University of Manchester; Manchester; United Kingdom |
JISC | The community can contribute to this resource | nlx_157591 | http://www.ebi.ac.uk/efo/swo, http://purl.bioontology.org/ontology/SWO, http://theswo.svn.sourceforge.net/viewvc/theswo/trunk/src/release/swoinowl/swo_merged/swo_merged.owl | SCR_003493 | 2026-09-12 12:55:59 | 2 |
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