Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://lifesciences.tecan.com/products/liquid_handling_and_automation/tecan_d300e_digital_dispenser
This instrument is precision liquid handling instrument that enables non-contact, nanoliter-to-microliter scale dispensing of small molecules, biologics, or other reagents directly into assay plates for high-throughput drug screening and dose-response studies.
Proper citation: Tecan: D300e Digital Dispenser (RRID:SCR_027242) Copy
Thermocycler with gradient function used in PCR (Polymerase Chain Reaction) experiments. It allows for creation of temperature gradient across the sample block, enabling users to optimize annealing temperatures for different reactions simultaneously. Labcycler Gradient with 96 Wells (0.2 ml) Silver Block (± 20 °C).
Proper citation: MBI Montreal Biotech: SensoQuest Labcycler Gradient (RRID:SCR_027199) Copy
https://lifecanvastech.com/wp-content/uploads/2023/02/SmartSPIM-Brochure.pdf
High-speed, high-resolution light sheet microscope designed for imaging large, cleared tissue samples. Utilizes patented axially-swept light sheet technology to achieve uniform axial resolution across the entire sample, enabling rapid volumetric imaging. System is particularly well-suited for imaging cleared tissues, including whole organs and even entire juvenile mice, with options for both aqueous and organic clearing methods. Light sheet imaging for rapid volumetric acquisition of intact samples.
Proper citation: Life Canvas Technologies: SmartSPIM (RRID:SCR_027239) Copy
https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027238.pdf
Light sheet fluorescence microscope designed for high-resolution, three-dimensional imaging of large, cleared, and fluorescently labeled biological samples. It excels at visualizing entire biological systems like organs, embryos, or even small animals with cellular resolution, making it suitable for studying complex biological structures and processes.
Proper citation: LaVision: BioTec UltraMicroscope II (RRID:SCR_027238) Copy
https://www.gehealthcare.com/products/bone-and-metabolic-health/prodigy
System offers dual energy X-ray absorptiometry assessment. Bone densitometry scan with enCORE v18 software platform. Meets International Society for Clinical Densitometry testing guidelines. Used to take measurements to work out the strength of bones in advanced bone and metabolic health clinical applications.
Proper citation: GE: Healthcare: Lunar Prodigy Advance system (RRID:SCR_025004) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/baycest
Software tool for Bayesian analysis for chemical exchange saturation transfer z-spectra.
Proper citation: BayCEST (RRID:SCR_024951) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlasquery
Software tool designed to allow command line interrogation of atlas images supplied with FSL. It takes as input the name of one of FSL atlases together with either coordinate of interest or mask.
Proper citation: Atlasquery (RRID:SCR_024944) Copy
https://github.com/BlankenbergLab/gmxtras/tree/main
Software tool as set of Python scripts to modify GROMACS topology files, by adding content from different topology files and other GROMACS input files. Useful, particularly when system components are assembled outside of GROMACS, or in different steps within GROMACS. This helps prevent users from having to copy and paste significantly large blocks of text within topology files.
Proper citation: GROMACS topology editors (RRID:SCR_025013) Copy
State university in Oslo and Kjeller in Norway. It is the result of the merger of many former vocational colleges in the Greater Oslo Region.
Proper citation: Oslo Metropolitan University (RRID:SCR_024957) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST
Software tool to segment 3D image of brain into different tissue types like Grey Matter, White Matter, CSF, etc., whilst also correcting for spatial intensity variations also known as bias field or RF inhomogeneities. Used to perform tissue type segmentation and bias field correction.
Proper citation: FMRIB's Automated Segmentation Tool (RRID:SCR_024920) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FNIRT
Software tool to perform linear registration, meaning that it will translate, rotate, zoom and shear one image to match it with another.
Proper citation: FNIRT (RRID:SCR_024923) Copy
https://support.qmenta.com/knowledge/sienax-2.6-/-fsl-6.0
Software tool to estimate total brain tissue volume, from single image, normalized for skull size.
Proper citation: SIENAX (RRID:SCR_024926) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Cluster
Software application used to form clusters, report information about clusters and/or perform cluster based inference.
Proper citation: fsl-cluster (RRID:SCR_024938) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/XTRACT
Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain.
Proper citation: XTRACT (RRID:SCR_024933) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Randomise
Software tool for nonparametric permutation inference on neuroimaging data.
Proper citation: randomise (RRID:SCR_024937) Copy
https://www.hurondigitalpathology.com/tissuescope-le-3-2/
Scanner for versatility, throughput, and ease of use. Scan up to twelve 1” x 3” brightfield slides, up to six 2” x 3” slides, or any size slide up to 6”x 8”.
Proper citation: Huron Technologies: TissueScope LE Slide Scanner (RRID:SCR_024995) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MELODIC
Software tool to use at both the subject and group level to decompose FMRI data into time courses and spatial maps using Independent Component Analysis. Used to decompose single or multiple 4D data sets into different spatial and temporal components.
Proper citation: Multivariate Exploratory Linear Optimized Decomposition into Independent Components (RRID:SCR_024916) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FABBER
Software command-line tool for approximate Bayesian inference using generative signal models.
Proper citation: FABBER (RRID:SCR_024917) Copy
https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/verbena
Software tool for quantification of perfusion and other haemodynamic parameters from Dynamic Susceptibility Contrast perfusion MRI of the brain.
Proper citation: VERBENA (RRID:SCR_024919) Copy
https://www.3ds.com/products/simulia/abaqus
Software suite for finite element analysis and computer aided engineering.
Proper citation: Abaqus FEA (RRID:SCR_024997) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within dkNET that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
