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http://www.scienceexchange.com/facilities/4904

A contract research organization based in India that provides services including Clinical Development, Contract Manufacturing and Informatics.

Proper citation: GVK Biosciences Labs and Facilities (RRID:SCR_001044) Copy   

•   Source: SciCrunch Registry
  

http://purl.bioontology.org/ontology/BHO

An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.

Proper citation: Bleeding History Phenotype Ontology (RRID:SCR_001165) Copy   

•   Source: SciCrunch Registry
  

http://www.essentialtremor.org

The IETF is an international nonprofit organization whose mission is to provide global educational information, services and support to those affected by essential tremor (ET) and to health care providers, while promoting and funding ET research. Services provided by the IETF include mailing or emailing a free information packet about ET upon request, maintaining an up-to-date listing of physicians specializing in ET, and assisting in forming and maintaining ET support groups. In addition, the IETF conducts several free educational events in cities across the United States every year, and an annual awareness campaign that runs in conjunction with the organization's largest fundraising activity, Tulips for Tremors. Every year, the IETF also funds basic research into the cause(s) of ET. Small grants are awarded to established scientists whose primary interest is tremor disorders. The IETF funds this program in the hope that these scientists will collect sufficient published data to help them qualify for future federal funding that will lead to better treatments and a cure. IETF members receive two copies a year of the member magazine, Tremor Talk and three copies of the research newsletter, The Scoop on Tremor. Articles in both publications are written for the non-medically trained person and discuss recent advances in research, coping techniques and topics of general interest to those with ET. Medical and research articles are written by physicians and researchers who work with patients with ET and/or study ET in laboratories. The International Essential Tremor Foundation is based in Lenexa, Kansas.

Proper citation: International Essential Tremor Foundation (RRID:SCR_001163) Copy   

•   Source: SciCrunch Registry
  

http://www.cs.ucr.edu/~tanaseio/metaphyl.htm

Software implementing a supervised classification method for metagenomic samples that takes advantage of the natural structure of microbial community data encoded by phylogenetic trees.

Proper citation: MetaPhyl (RRID:SCR_001169) Copy   

•   Source: SciCrunch Registry
  

http://www.ohri.ca/FacilitiesAndServices/

Portal to research facilities and services within the Ottawa Hospital Research Institute. Facilities and services include access to their bioinformatics facility, flow cytometry facility, human pluripotent stem cell facility, and their clinical research lab.

Proper citation: Ottawa Hospital Research Institute Labs and Facilities (RRID:SCR_001045) Copy   

•   Source: SciCrunch Registry
  

http://download.cnet.com/icyou-Health-Video/3000-2129_4-75046330.html

THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. icyou is an internet resource of health-related video clips submitted by users. Health topics covered in videos can range anywhere from infectious diseases to fitness and exercise, with videos generally being shorter than 10 minutes in length. Videos also contain information on treatment and procedures, medical fields, and health politics and policy. These videos may or may not be authored by licensed medical personnel. All videos are searchable, and users can also choose to upload their own healthcare-related videos. In addition to gathering healthcare video from the best sources on the Web and beyond, icyou.com can call on its own award-winning health reporting team to cover the latest issues and trends. Through its parent company Benefitfocus, icyou.com has full access to the Benefitfocus Media Studio, a state-of-the-art HD facility located in Charleston, South Carolina. This studio is the only one of its kind devoted solely to creating healthcare-oriented video content. In it, the Benefitfocus Media team creates up-to-the-minute reports, tutorials, features and more that help illuminate its users about the complexities of the many facets of healthcare.

Proper citation: icyou Health Videos (RRID:SCR_001167) Copy   

•   Source: SciCrunch Registry
  

https://www.bioconductor.org/packages//2.10/bioc/html/beadarraySNP.html

Software package for importing data from Illumina SNP experiments and performing copy number calculations and reports.

Proper citation: beadarraySNP (RRID:SCR_001281) Copy   

•   Source: SciCrunch Registry
  

https://github.com/akiomiyao/tif

A search program to detect insertions of transposable element from short reads of next generation sequencer.

Proper citation: Transposon Insertion Finder (RRID:SCR_001159) Copy   

•   Source: SciCrunch Registry
  

http://josephryan.github.io/baa.pl/

Software tool to evaluate de novo genome assemblies with RNA transcripts.

Proper citation: Baa.pl (RRID:SCR_001197) Copy   

•   Source: SciCrunch Registry
  

http://www.mcw.edu/

Private and freestanding medical school and graduate school of sciences in Milwaukee, Wisconsin. The institution offers medical degrees as well as masters and PhD-level studies in areas such as biochemistry, cell biology, and community and public health.

Proper citation: Medical College of Wisconsin; Wisconsin; USA (RRID:SCR_001077) Copy   

•   Source: SciCrunch Registry
  

http://pathology.wustl.edu/VirusHunter/

A fully automated and modular software package for mining sequence data to identify sequences of microbial origin. The pipeline was optimized for analysis of data generated by the Roche/454 next-generation sequencing platform but can be applied to longer sequences (Sanger sequencing data or assembled contigs) as well. Microbial sequences are identified on the basis of BLAST alignments and the taxonomic classification of the reference sequence(s) to which a read is aligned. Viruses are the focal point of VirusHunter as released, but it can be easily modified to generate parallel outputs for bacterial or parasitic species. To date, VirusHunter has been applied to thousands of specimens, including human, animal and environmental samples, resulting in the detection of many known and novel viruses.

Proper citation: VirusHunter (RRID:SCR_001198) Copy   

•   Source: SciCrunch Registry
  

http://www.ou.edu/

A coeducational public research university located in Oklahoma, USA. The institution confers undergraduate and graduate degrees in fields such as law, medicine, aviation, energy management, history of science, and Native American studies.

Proper citation: University of Oklahoma; Oklahoma; USA (RRID:SCR_001074) Copy   

•   Source: SciCrunch Registry
  

http://www.adelaide.edu.au/

Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research.

Proper citation: University of Adelaide; Adelaide; Australia (RRID:SCR_001075) Copy   

•   Source: SciCrunch Registry
  

https://www.athensresearch.com/

Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits.

Proper citation: Athens Research and Technology (RRID:SCR_001079) Copy   

•   Source: SciCrunch Registry
  

http://www.bioconductor.org/packages/2.13/bioc/html/bsseq.html

R package with tools for analyzing and visualizing bisulfite sequencing data.

Proper citation: bsseq (RRID:SCR_001072) Copy   

•   Source: SciCrunch Registry
  

http://www.bioconductor.org/packages/release/bioc/html/MmPalateMiRNA.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software R package written for analysis of murine palate miRNA two-color expression data.

Proper citation: MmPalateMiRNA (RRID:SCR_001070) Copy   

•   Source: SciCrunch Registry
  

http://autosome.ru/ChIPMunk/

DNA motif discovery software adapted for ChIP-Seq data. It is an iterative algorithm that combines greedy optimization with bootstrapping and uses coverage profiles as motif positional preferences. It does not require truncation of long DNA segments and it is practical for processing up to tens of thousands of data sequences

Proper citation: ChIPMunk (RRID:SCR_001191) Copy   

•   Source: SciCrunch Registry
  

http://www.broadinstitute.org/science/programs/genome-biology/computational-rd/vaal-manual

A polymorphism discovery algorithm for short reads. To run it, you provide reads (and quality scores) from a "sample genome" as input, along with a vector sequence to trim from the reads, and a reference sequence for a related genome to compare to. VAAL produces as output a an assembly for the sample genome, together with a mask showing which bases are "trusted". It then deduces from that a list of differences between the sample and related genomes. Alternatively, it can be provided as input read data for two sample genomes, together with a reference sequence for a related genome. In this case, VAAL produces assemblies for each of the sample genomes, and compares them to each other, thereby deducing a list of differences between them. VAAL has been tested on bacteria, using single lanes of 36 bp unpaired reads from the Illumina platform. Note: This software package is no longer supported and information on this page is provided for archival purposes only.

Proper citation: VAAL (RRID:SCR_001184) Copy   

•   Source: SciCrunch Registry
  

http://www.bioconductor.org/packages/release/bioc/html/RmiR.html

R package that contains functions to merge microRNA and respective targets using different databases.

Proper citation: RmiR (RRID:SCR_001069) Copy   

•   Source: SciCrunch Registry
  

http://bionimbus.opensciencedatacloud.org/

A cloud-based infrastructure for managing, analyzing and sharing genomics datasets.

Proper citation: Bionimbus (RRID:SCR_001189) Copy   

•   Source: SciCrunch Registry