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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Center for Gamma Ray Imaging Resource Report Resource Website |
Center for Gamma Ray Imaging (RRID:SCR_001384) | Center for Gamma-Ray Imaging | instrument manufacture, material service resource, production service resource, service resource | Biomedical technology resource center that develops new gamma-ray imaging instruments and techniques that yield substantially improved spatial and temporal resolutions. The Center makes its imagers and expertise available to a wide community of biomedical and clinical researchers through collaborative and service-oriented interactions. The collaborative research applies these new imaging tools to basic research in functional genomics, proteomics, cancer, cardiovascular disease and cognitive neuroscience, and to clinical research in tumor detection and other selected topics. There are five core research projects: * Detector technology research and development * Reconstruction algorithms and system modeling * Data acquisition, signal processing, and system development * Image-quality assessment and system optimization * Techniques for molecular imaging | spect, ct, imaging, clinical, gamma-ray, imaging instrument, basic research, functional genomics, cardiovascular disease, cognitive neuroscience, breast cancer, tumor detection, proteomics, cancer | has parent organization: University of Arizona; Arizona; USA | NIBIB EB002035-14 | nlx_152567 | SCR_001384 | SciCrunch Registry | 2026-09-26 02:12:59 | 0 | ||||||||
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Semantic Measures Library Resource Report Resource Website |
Semantic Measures Library (RRID:SCR_001383) | SML | software library, software resource, software toolkit | Open source Java library dedicated to semantic measures computation and analysis. Tools based on the SML are also provided through the SML-Toolkit, a command line software giving access to some of the functionalities of the library. The SML and the toolkit can be used to compute semantic similarity and semantic relatedness between semantic elements (e.g. concepts, terms) or entities semantically characterized (e.g. entities defined in a semantic graph, documents annotated by concepts defined in an ontology). | semantic measure, semantic similarity, semantic relatedness, functional similarity, gene ontology, annotation, parse, gene, disease ontology, mesh, rdf, owl, umls, snomed-ct, java, semantic, command line |
is listed by: FORCE11 is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Ecole des Mines d'Ales; Ales; France |
Ecole des Mines d'Ales; Ales; France ; LGI2P Research Center |
PMID:24108186 | Free, Available for download, Freely available | nlx_152555 | http://www.semantic-measures-library.org | SCR_001383 | SciCrunch Registry | SML-Toolkit, Semantic Measures Library and ToolKit, Semantic Measures Library & ToolKit | 2026-09-26 02:12:59 | 0 | ||||
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CODR: C PATH On Line Data Repository Resource Report Resource Website 1+ mentions |
CODR: C PATH On Line Data Repository (RRID:SCR_001388) | CODR | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | A repository of de-identified control arm data of patients from clinical studies of Alzheimer's disease and Mild Cognitive Impairment. It provides the ability to analyze the data online with the R statistical analysis program, create and download standard reports, run complex queries, or download data to a desktop for further analysis. Additional data will be added to the database over time. Critical Path Institute consortia members and qualified researchers may upload and work on scientific data relevant to biomarkers of drug toxicity, neurodegenerative diseases, and patient-reported outcomes. | clinical data, alzheimer's disease, camd, biomarker, drug toxicity, neurodegenerative disease, patient-reported outcome, patient outcome, metadata standard, data repository | has parent organization: CAMD | Neurodegenerative disease, Drug toxicity, Alzheimer's disease, Mild Cognitive Impairment | Free, Freely Available | nlx_152562 | SCR_001388 | SciCrunch Registry | C-Path Online Data Repository (CODR), CPATH online data repository, C-PATH Online Data Repository, C PATH On Line Data Repository | 2026-09-26 02:12:59 | 2 | ||||||
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CAMD Resource Report Resource Website 1+ mentions |
CAMD (RRID:SCR_001389) | CAMD | consortium, data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 8, 2022. Consortium developing new technologies and methods to accelerate the development and review of medical products for neurodegenerative diseases. It is focused on accelerating drug development for patients with chronic neurodegenerative disease, namely, Alzheimer's disease (AD) and Parkinson's disease (PD), by advancing drug development tools for evaluating drug efficacy, conducting clinical trials, and streamlining the process of regulatory review. The consortium focuses on sharing precompetitive patient-level data from the control arms of legacy clinical trials, developing new tools to be submitted to the regulatory agencies, and developing consensus data standards. CAMD has the following areas of focus: (1) qualification of biomarkers, (2) development of common data standards, (3) creation of integrated databases for clinical trials data, and (4) development of quantitative model-based tools for drug development. Regulatory milestones include a qualification opinion with EMA for the use of low baseline hippocampal volume for patient enrichment in pre-dementia trials, and most recently, positive regulatory decisions from the FDA and EMA for the use of a clinical trial simulation tool to aid in trials for mild to moderate stages of AD., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | data set, clinical trial, mild cognitive impairment, clinical, biomarker, metadata standard, disease progression model, consortium, drug, data sharing, disease modeling, drug development, disease model, imaging, cerebral spinal fluid |
is listed by: Consortia-pedia has parent organization: Critical Path Institute; Arizona; USA is parent organization of: CODR: C PATH On Line Data Repository |
Publicly funded | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152563 | SCR_001389 | SciCrunch Registry | Coalition Against Major Diseases | 2026-09-26 02:12:59 | 6 | ||||||
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Salk Institute for Biological Studies - Slesinger Lab Resource Report Resource Website |
Salk Institute for Biological Studies - Slesinger Lab (RRID:SCR_001850) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This lab is investigating the molecular details of how potassium ion channels open and close (i.e. gating), the cellular regulation of potassium channels in nerve cells, and more recently, their role in drug addiction and mental disorders. There are currently two related areas of focus in the lab. One main area of research is investigating the G protein regulation of GIRK channels, utilizing structural, biochemical and electrophysiological strategies. The other area extends from the G protein regulation experiments to studies that examine the role of GIRK channels in the neural response to drugs of abuse, utilizing biochemical, electrophysiological and behavioral strategies. | drug, electrophysiological, gating, abuse, addiction, behavioral, biochemical, cell, cellular, channel, disorder, girk channel, g protein, ion, mental, molecular, nerve, neural, potassium, regulation, structural | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10413 | SCR_001850 | SciCrunch Registry | Salk Institute (Slesinger) | 2026-09-26 02:13:05 | 0 | |||||||||
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Farsight Toolkit Resource Report Resource Website 1+ mentions |
Farsight Toolkit (RRID:SCR_001728) | FARSIGHT | data processing software, image analysis software, image processing software, software application, software resource, software toolkit | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. A collection of software modules for image data handling, pre-processing, segmentation, inspection, editing, post-processing, and secondary analysis. These modules can be scripted to accomplish a variety of automated image analysis tasks. All of the modules are written in accordance with software practices of the Insight Toolkit Community. Importantly, all modules are accessible through the Python scripting language which allows users to create scripts to accomplish sophisticated associative image analysis tasks over multi-dimensional microscopy image data. This language works on most computing platforms, providing a high degree of platform independence. Another important design principle is the use of standardized XML file formats for data interchange between modules. | editing, 2d, 3d, algorithm, analysis, bio-format, computational, data, graphical, inspection, metadata, microscopy, morphological, morphology, pixel, processing, segmentation, taxonomy, image | has parent organization: University of Houston; Texas; USA | NIBIB R01-EB005157; NSF EEC-9986821; NIBIB R01EB005157 |
PMID:24808857 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10227 | SCR_001728 | SciCrunch Registry | FARSIGHTWiki | 2026-09-26 02:13:03 | 2 | |||||
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CCAT Resource Report Resource Website 50+ mentions |
CCAT (RRID:SCR_001843) | CCAT | software resource | THIS RESOURCE IS OUT OF SERVICE, documented on April 5, 2017, A software package for the analysis of ChIP-seq data with negative control., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Genome Institute of Singapore; Singapore; Singapore |
PMID:20371496 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00428, biotools:ccat | https://bio.tools/ccat | SCR_001843 | SciCrunch Registry | Control based ChIP-Seq Analysis Tools | 2026-09-26 02:13:05 | 76 | |||||
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CNVrd2 Resource Report Resource Website 1+ mentions |
CNVrd2 (RRID:SCR_001723) | software resource | A software package that uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions. | standalone software, illumina, unix/linux, mac os x, windows, r, clustering., copy number variation, coverage, linkage disequilibrium, snp, sequencing |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23646200 | Free, Available for download, Freely available | OMICS_03924 | http://www.bioconductor.org/packages/release/bioc/html/CNVrd2.html, https://github.com/hoangtn/CNVrd2 | SCR_001723 | SciCrunch Registry | CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data | 2026-09-26 02:13:03 | 5 | ||||||
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GenABEL Resource Report Resource Website 500+ mentions |
GenABEL (RRID:SCR_001842) | software library, software resource, software toolkit | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. R software library for genome-wide association analysis for quantitative, binary and time-till-event traits. | r, genome-wide association, single nucleotide polymorphism |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: Debian is listed by: SoftCite |
Centre for Medical Systems Biology; Netherlands ; Netherlands Genomics Initiative ; Netherlands Organisation for Scientific Research ; Russian Foundation for Basic Research |
PMID:17384015 DOI:10.1186/1471-2105-11-134 DOI:10.1093/bioinformatics/btm108 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154328, OMICS_00234 | http://mga.bionet.nsc.ru/~yurii/ABEL/GenABEL/, https://cran.r-project.org/web/packages/GenABEL/index.html, https://sources.debian.org/src/probabel/ | SCR_001842 | SciCrunch Registry | GenABEL package, R/GENABEL | 2026-09-26 02:13:05 | 506 | |||||
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TaLasso Resource Report Resource Website 1+ mentions |
TaLasso (RRID:SCR_001726) | TaLasso | analysis service resource, data analysis service, production service resource, service resource, software resource | Tool for quantification of human miRNA-mRNA Interactions. TaLasso is also available as Matlab or R code. | mirna, mrna, matlab, r, gene expression, gene |
is listed by: OMICtools has parent organization: Autonomous University of Madrid; Madrid; Spain |
PMID:22348024 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00417 | SCR_001726 | SciCrunch Registry | 2026-09-26 02:13:03 | 1 | |||||||
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FreeSurfer Resource Report Resource Website 10000+ mentions |
FreeSurfer (RRID:SCR_001847) | FreeSurfer | data processing software, data visualization software, image analysis software, software application, software resource | Open source software suite for processing and analyzing human brain MRI images. Used for reconstruction of brain cortical surface from structural MRI data, and overlay of functional MRI data onto reconstructed surface. Contains automatic structural imaging stream for processing cross sectional and longitudinal data. Provides anatomical analysis tools, including: representation of cortical surface between white and gray matter, representation of the pial surface, segmentation of white matter from rest of brain, skull stripping, B1 bias field correction, nonlinear registration of cortical surface of individual with stereotaxic atlas, labeling of regions of cortical surface, statistical analysis of group morphometry differences, and labeling of subcortical brain structures.Operating System: Linux, macOS. | processing, analysis, human, brain, MRI, image, reconstruction, cortical, surface, fMRI, data |
is used by: Wisconsin Cortical Thickness Analysis (CTA) Toolbox is used by: freesurfR is used by: Automatic Analysis is used by: NHP Freesurfer is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: Debian is listed by: SoftCite is related to: PySurfer is related to: RFT FDR is related to: FMRLAB is related to: TRACULA is related to: BASH4RfMRI has parent organization: Harvard University; Cambridge; United States has plug in: JOSA works with: NIAG Addiction Data |
NCRR RR014075; NCRR U24 RR021382; NINDS R01 NS052585 |
PMID:22248573 | Free, Available for download, Freely available | nif-0000-00304 | https://sources.debian.org/src/freesurfer/, http://www.nitrc.org/projects/freesurfer, http://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall | SCR_001847 | SciCrunch Registry | 2026-09-26 02:13:05 | 12664 | |||||
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Alt Event Finder Resource Report Resource Website |
Alt Event Finder (RRID:SCR_001846) | Alt Event Finder | software resource | Software tool for deriving data-driven alternative splicing (AS) events from RNA-seq data. It analyses the transcripts built by Cufflinks or Scripture and outputs AS event annotations which is compatible with MISO. It can be used for annotating novel AS events from a well-annotated species such as human. It can also be used for species of which known AS event annotation is not available. The current release (v0.1) supports skipped exon events only. | alternative splicing, rna-seq, alternative splicing event, transcript, annotation, splicing regulation |
is listed by: OMICtools is related to: Cufflinks is related to: Scripture has parent organization: Indiana University; Indiana; USA |
PMID:23281921 | Free, Freely available | OMICS_01941 | SCR_001846 | SciCrunch Registry | Alt Event Finder: A tool for extracting alternative splicing events from RNA-seq data | 2026-09-26 02:13:05 | 0 | ||||||
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sSeq Resource Report Resource Website 10+ mentions |
sSeq (RRID:SCR_001719) | sSeq | software resource | Software package to discover the genes that are differentially expressed between two conditions in RNA-seq experiments. Gene expression is measured in counts of transcripts and modeled with the Negative Binomial (NB) distribution using a shrinkage approach for dispersion estimation. The method of moment (MM) estimates for dispersion are shrunk towards an estimated target, which minimizes the average squared difference between the shrinkage estimates and the initial estimates. The exact per-gene probability under the NB model is calculated, and used to test the hypothesis that the expected expression of a gene in two conditions identically follow a NB distribution. | rna-seq, differential expression |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23589650 | Free, Available for download, Freely available | OMICS_01962 | SCR_001719 | SciCrunch Registry | sSeq - Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size | 2026-09-26 02:13:03 | 49 | ||||||
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Duke University Medical Center: Duke Image Analysis Laboratory Resource Report Resource Website 10+ mentions |
Duke University Medical Center: Duke Image Analysis Laboratory (RRID:SCR_001716) | data or information resource, database, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. The Duke Image Analysis Laboratory (DIAL) is committed to providing comprehensive imaging support in research studies and clinical trials to various agencies. The capabilities of the lab include protocol development, site training and certification, and image archival and analysis for a variety of modalities including magnetic resonance imaging, magnetic resonance spectroscopy, computed tomography and nuclear medicine. DIAL uses the latest technologies to analyze Magnetic Resonance Imaging (MRI) data sets of the brain. Currently the lab is engaged in measurement of the hippocampus, amygdala, caudate, ventricular system, and other brain regional volumes. Each of these techniques have undergone a rigorous validation process. The measurements of brain structures provide a useful means of non-invasively testing for changes in the brain of the patient. Changes over time in the brain can be detected, and evaluated with respect to the treatment that the patient is receiving. Magnetic Resonance Spectroscopy (MRS) allows DIAL to obtain an accurate profile of the chemical content of the brain. This sensitive technique can detect small changes in the metabolic state of the brain; changes that vary in response to administration of therapeutic agents. The ability to detect these subtle shifts in brain chemistry allows DIAL to identify changes in the brain with more sensitivity than allowed by image analysis. In this respect, NMR spectroscopy can provide early detection of changes in the brain, and serves to compliment the data obtained from image analysis. Additionally, DIAL also contains SQUID (Scalable Query Utility and Image Database). It is an image management system developed to facilitate image management in research and clinical trials: SQUID offers secure, redundant image storage and organizational functions for sorting and searching digital images for a variety of modalities including MRI, MRS, CAT Scan, X-Ray and Nuclear Medicine. SQUID can access images directly from DUMC scanners. Data can also be loaded via DICOM CDs, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | academic, amygdala, analysis, biotechnology, brain, cat scan, caudate, chemical, clinical, computed, development, digital, hippocampus, imaging, lab, laboratory, magnetic resonance imaging, magnetic resonance spectroscopy, medical, medicine, metabolic, mri, mrs, nmr, nuclear, nuclear medicine, pharmaceutical, research, spectroscopy, structure, technology, therapeutic, tomography, treatment, trial, ventricular, ventricular system, volume, x-ray, FASEB list | has parent organization: Duke University; North Carolina; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10213 | SCR_001716 | SciCrunch Registry | DMC DIAL | 2026-09-26 02:13:03 | 33 | ||||||||
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Stable Isotope Labeling with Amino Acids in Cell Culture Resource Report Resource Website 500+ mentions |
Stable Isotope Labeling with Amino Acids in Cell Culture (RRID:SCR_001873) | data or information resource, portal, topical portal | Stable isotope labeling with amino acids in cell culture (SILAC) is a simple and straightforward approach for in vivo incorporation of a label into proteins for mass spectrometry (MS)-based quantitative proteomics. SILAC relies on metabolic incorporation of a given "light" or "heavy" form of the amino acid into the proteins. The method relies on the incorporation of amino acids with substituted stable isotopic nuclei (e.g. deuterium, 13C, 15N). In an experiment, two cell populations are grown in culture media that are identical except that one of them contains a "light" and the other a "heavy" form of a particular amino acid (e.g. 12C and 13C labeled L-lysine, respectively). When the labeled analog of an amino acid is supplied to cells in culture instead of the natural amino acid, it is incorporated into all newly synthesized proteins. After a number of cell divisions, each instance of this particular amino acid will be replaced by its isotope labeled analog. Since there is hardly any chemical difference between the labeled amino acid and the natural amino acid isotopes, the cells behave exactly like the control cell population grown in the presence of normal amino acid. It is efficient and reproducible as the incorporation of the isotope label is 100%. SILAC Applications: - Differential expression of proteins and identification of disease biomarkers - Cell signaling dynamics - Analysis of yeast pheromone signaling pathway - Identification of methylation sites - Identification of protease substrates - Study of protein complexes/protein interactions - Analysis of signaling pathways and effect of pharmacological inhibitors - Subcellular proteomics Sponsors: Supported in part by an NIH Roadmap grant Technology Center for Networks & Pathways of Lysine Modification. | amino acid, analog, biomarker, cell culture, cell division, cell signal, chemical, deuterium, disease, inhibitor, in vivo, isotope, labeling, lysine, mass spectrometry, media, metabolic, methylation site, nucleus, pharmacological, protease, protein, protein complex, protein interaction, proteomics, signaling pathway, subcellular, substrate, yeast pheromone | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10435 | SCR_001873 | SciCrunch Registry | SILAC | 2026-09-26 02:13:05 | 673 | |||||||||
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King's College London; London; United Kingdom Resource Report Resource Website 1+ mentions |
King's College London; London; United Kingdom (RRID:SCR_001744) | KCL | university | Public research university located in London, United Kingdom that offers undergraduate, graduate, and professional degree programs in medicine, economics, social sciences, etc. | public, research, london, medical school, undergraduate, graduate |
uses: ReadCube is related to: AddNeuroMed is related to: EU-AIMS is related to: NEWMEDS is related to: ONE Study is related to: EMIF is parent organization of: Pliny is parent organization of: TRANSFoRm is parent organization of: Kings College London Infectious Diseases BioBank is parent organization of: Major depressive disorder neuroimaging database is parent organization of: Bipolar Disorder Neuroimaging Database is parent organization of: Marker And Gene Interpolation and Correlation is parent organization of: Brain Segmentation Testing Protocol is parent organization of: MSbind is parent organization of: Pharmacological Imaging and Pattern Recognition toolbox is parent organization of: Neuromuscular disease outcome measures is parent organization of: Haemophilia B Mutation Database is parent organization of: Brain and Body Genetic Resource Exchange is parent organization of: LIGand Attachment SITE Database is parent organization of: Rodent Brain Extraction Tool is parent organization of: AddNeuroMed is parent organization of: NEWMEDS is parent organization of: MRC London Neurodegenerative Diseases Brain Bank is parent organization of: Kings College London Microscopy Innovation Centre Core Facility |
Free, Freely Available | grid.13097.3c, nlx_60659, Crossref funder ID:100009360, ISNI:0000 0001 2322 6764, Wikidata:Q245247 | https://ror.org/0220mzb33 | SCR_001744 | SciCrunch Registry | King's College | 2026-09-26 02:13:03 | 2 | ||||||
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Dendritica: Software Tools for Studying Dendritic Signaling Resource Report Resource Website 1+ mentions |
Dendritica: Software Tools for Studying Dendritic Signaling (RRID:SCR_001865) | simulation software, software application, software resource | Dendritica is a program package for relating dendritic geometry and signal propagation. The programs are based on those used for the simulations described in the following paper: Vetter, P., Roth, A. & Husser, M. (2001). Action potential propagation in dendrites depends on dendritic morphology. Journal of Neurophysiology, 85: 926-937. Dendritica can functionally be divided into three main parts: - Interactive morphological analysis and electrophysiological simulation of single cells - Automated batch simulations across a set of morphologies using the same simulation parameters - Automated analysis of batch simulation runs Dendritica requires NEURON 4.1.1 with some modifications described in Appendix 1. It was tested for NEURON 4.1.1 on Linux and SGI IRIX. Some modifications to the Dendritica code may be necessary in order to run it on older or newer versions of NEURON. Sponsors: This work was supported by the Wellcome Trust, the European Community, the Max-Planck-Gesellschaft, the Wellcome Trust 4-year PhD Programme in Neuroscience. | electrophysiological simulation, dendritic geometry, interactive, morphological, morphology, neuron, sigle cell, signal propagation | Free | http://www.dendrite.org/software.html | SCR_001865 | SciCrunch Registry | Dendritica | 2026-09-26 02:13:05 | 1 | |||||||||
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Internet Atlas of Histology Resource Report Resource Website |
Internet Atlas of Histology (RRID:SCR_001745) | curriculum material, data or information resource, narrative resource, portal, slide, topical portal, training material | This portal leads to the Internet Atlas of Histology. This atlas allows you to explore the complete set of histological specimens that features many excellent plastic sections prepared by Aulikki Kokko-Cunningham, M.D. Also called University of Illnois at Urbana-Champaign, the College of Medicine: Internet Atlas of Histology Over 1000 labeled histological features are labeled and have accompanying functional descriptions. All of this information is accessible though an alphabetical index and a search engine. This resource has images categorized in: - Slides: Links to all of the specimens - Objects:Index of histological features Sponsors: This resource is supported by UIUC. | electron micrograph, electron microscopy, endocrine, epithelium, female reproductive system, blood, bone, bone marrow, cell, circulatory system, connective tissue, cross section, digestive tract, histology, immune system, light microscopy, male reproductive system, muscle, nervous system, object, respiratory system, scanning electron microscopy (sem), sense organ, skin, specimen, tissue, transmission electron microscopy (tem), urinary system, image | has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA | Free, Freely Available | nif-0000-10251 | https://histo.life.illinois.edu/histo/atlas/index.php | SCR_001745 | SciCrunch Registry | UICU Histology Atlas | 2026-09-26 02:13:03 | 0 | |||||||
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Stony Brook University Medical Center: Neuropathology Primer Resource Report Resource Website |
Stony Brook University Medical Center: Neuropathology Primer (RRID:SCR_001866) | book, data or information resource, narrative resource | This is a primer of basic neuropathology- The Central Nervous System and Skeletal Muscle. It is organized in chapters by category of disease with a separate chapter for skeletal muscle. Many of the diseases could be included in more than one chapter because of overlapping pathophysiology; in each case the disorder is included in a single section in the interest of convenience. In order to recognize pathology one must have a basic foundation in normal structure, so the first chapter is an overview of basic regional central nervous system structure and anatomy. It includes an introduction to neurohistology. Other chapters address the pathophysiology of different categories of disease and provide examples of gross and microscopic pathology when they are available. | anatomy, central nervous system, disease, gross pathology, microscopic pathology, neurohistology, neuropathology, pathology, pathophysioogy, skeletal muscle, structure | Free, Freely available | nif-0000-10438 | http://www.stonybrookmedicalcenter.org/body.cfm?id=1176 | SCR_001866 | SciCrunch Registry | Neuropathology Primer | 2026-09-26 02:13:05 | 0 | ||||||||
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Animal QTLdb Resource Report Resource Website 50+ mentions |
Animal QTLdb (RRID:SCR_001748) | Animal QTLdb | data or information resource, data repository, database, service resource, storage service resource | Database of trait mapping data, i.e. QTL (phenotype / expression, eQTL), candidate gene and association data (GWAS) and copy number variations (CNV) mapped to livestock animal genomes, to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features, such as annotated genes. QTLdb is open to house QTL/association date from other animal species where feasible. Most scientific journals require that any original QTL/association data be deposited into public databases before paper may be accepted for publication. User curator accounts are provided for direct data deposit. Users can download QTLdb data from each species or individual chromosome. | chromosome, comparative genomics, dna sequence, genome, livestock, quantitative trait locus, non-human animal, structural genomics, single-nucleotide polymorphism, gene association, genomics, trait, copy number variation, trait, phenotype, expression, eqtl, genome wide association study, candidate gene, genotype |
uses: Entrez Gene uses: Ensembl is used by: NIF Data Federation is used by: MONARCH Initiative is listed by: re3data.org is related to: Ensembl Variation is related to: Vertebrate Trait Ontology has parent organization: Iowa State University; Iowa; USA has parent organization: NAGRP Bioinformatics Coordination Program |
USDA 2007-04187; USDA NRSP-8 |
PMID:23180796 PMID:17245610 |
Free, Freely available | nif-0000-02550, r3d100010744 | http://www.animalgenome.org/QTLdb/ | SCR_001748 | SciCrunch Registry | Animal QTL database, Animal Quantitative Trait Loci database, AnimalQTLdb, Animal Quantitative Trait Loci (QTL) database | 2026-09-26 02:13:03 | 56 |
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