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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Bruker: timsTOF Pro 2 mass spectrometer Resource Report Resource Website 1+ mentions |
Bruker: timsTOF Pro 2 mass spectrometer (RRID:SCR_026545) | instrument resource | Mass spectrometer used for research, particularly in proteomics and metabolomics, leveraging Trapped Ion Mobility Spectrometry (TIMS) and Parallel Accumulation Serial Fragmentation (PASEF) technologies for enhanced 4D-omics capabilities. | Trapped Ion Mobility Spectrometry, Parallel Accumulation Serial Fragmentation, proteomics, metabolomics, enhanced 4D-omics, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026545.pdf | Model_Number_timsTOF_Pro_2 | SCR_026545 | Bruker timsTOF Pro 2 | 2026-08-01 12:13:42 | 1 | |||||||||
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Nikon: AXR NSPARC super resolution inverted microscope Resource Report Resource Website 10+ mentions |
Nikon: AXR NSPARC super resolution inverted microscope (RRID:SCR_026538) | instrument resource | Confocal microscope provides enables collection of more data over wide area and down to deep regions in tissues. Its high sensitivity and high-speed scanning reduce phototoxicity to specimen and minimize damage. Equipped with image acquisition/analysis functions utilizing Artificial Intelligence (AI), the AX/AX R can efficiently acquire highly reliable data. Nikon Spatial Array Confocal (NSPARC) detector utilizes detector array to collect two-dimensional image at each scanned point. It adds additional potential to imaging by providing new level of ultra-low noise sensitive spatial detection, enabling improved lateral resolution of 1 airy unit/~230 nm and improved signal-to-noise ratio. | Nikon Spatial Array Confocal detector, NSPARC detector, confocal microscope, reduce phototoxicity to specimen, minimize damage, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026538.pdf | Model_Number_AXR_NSPARC | SCR_026538 | 2026-08-01 12:13:42 | 11 | ||||||||||
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modeltest Resource Report Resource Website 100+ mentions |
modeltest (RRID:SCR_026633) | software resource, software application | Software tool for selecting the best-fit model of evolution for DNA and protein alignments. Used for selection of DNA and Protein evolutionary models. | selecting the best-fit model of evolution, DNA and protein alignments, selection of DNA and Protein evolutionary models, | Ministry of Economy and Competitiveness of Spain ; FEDER funds of the EU ; Galician Government ; Klaus Tschira Foundation |
PMID:31432070 | Free, Available for download, Freely available | SCR_026633 | ModelTest-NG | 2026-08-01 12:13:57 | 145 | ||||||||
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Roche: cobas e 602 analytical unit Resource Report Resource Website 1+ mentions |
Roche: cobas e 602 analytical unit (RRID:SCR_026640) | instrument resource | Immunochemistry analyzer as mid-volume throughput immunochemistry module that performs broad range of heterogeneous immunoassay tests using ElectroChemiLuminescence (ECL) technology. Offers Heterogeneous immunoassays, Throughput of up to 170 tests/hour, 25 reagent positions, Reagent cassette loading/unloading during standby, Carryover-free disposable tips, Clot and air bubble detection. | Immunochemistry analyzer, mid-volume throughput immunochemistry module, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026640.pdf | Model_Number_cobas_e_602 | https://diagnostics.roche.com/us/en/products/systems/cobas-8000-analyzer-series-sys-128.html | SCR_026640 | , cobas e 602 analytical unit, cobas e 602 analytical modul | 2026-08-01 12:13:57 | 1 | ||||||||
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Abbott: ARCHITECT i2000SR immunoassay analyzer Resource Report Resource Website 10+ mentions |
Abbott: ARCHITECT i2000SR immunoassay analyzer (RRID:SCR_026638) | instrument resource | Analyzer offers maximum throughput of up to 200 tests per hour. Featuring load-up capacity of 135 samples with 35 priority and 100 routine areas. Has 25 refrigerated reagent positions. Designed for efficient and accurate analysis of various biological samples, including serum, plasma, and other bodily fluids. | serum, plasma, bodily fluids, immunoassay analyzer, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026638.pdf | Model_Number_Architect_i2000SR | SCR_026638 | Architect i2000SR | 2026-08-01 12:13:44 | 13 | |||||||||
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Agilent: Seahorse XF Pro Analyzer Resource Report Resource Website 1+ mentions |
Agilent: Seahorse XF Pro Analyzer (RRID:SCR_026694) | instrument resource | Agilent Seahorse XF Pro analyzer measures and reports the oxygen consumption rate (OCR), proton efflux rate (PER) or extracellular acidification rate (ECAR), as well as ATP production rates of live cells in a 96-well format. This analyzer features excellent OCR precision at low rates, verified performance, optimized temperature control, and is automation enabled. The XF Pro analyzer is also equipped with advanced software, standardized workflows, and advanced data analytics available in the Agilent Seahorse Analytics software. These features greatly simplify the entire XF assay experience, from assay design to data QC and interpretation. | oxygen consumption rate, proton efflux rate, extracellular acidification rate, ATP production rates, live cells, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026694.pdf | Model_Number_Seahorse_XF_Pro | SCR_026694 | Seahorse XF Pro Analyzer | 2026-08-01 12:13:47 | 1 | |||||||||
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Mutect2 Resource Report Resource Website 1000+ mentions |
Mutect2 (RRID:SCR_026692) | software resource, software application | Software tool to call somatic short mutations via local assembly of haplotypes. Somatic variant caller that uses local assembly and realignment to detect SNVs and indels. | Somatic variant caller, call somatic short mutations, detect SNVs and indels, | DOI:10.1101/861054 | SCR_026692 | 2026-08-01 12:13:46 | 1110 | |||||||||||
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Leica: DMi8 Inverted Microscope Resource Report Resource Website 1+ mentions |
Leica: DMi8 Inverted Microscope (RRID:SCR_026672) | instrument resource | Leica DMi8 microscope is an inverted light microscope, intended as a general microscope for routine examinations of biological specimens. | inverted light microscope, microscope, | is used by: Icahn School of Medicine at Mount Sinai Microscopy and Advanced Bioimaging Core Facility | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026672.pdf | Model_Number_Leica_DMi8 | SCR_026672 | Leica DMi8, Leica DMi8 microscope | 2026-08-01 12:13:46 | 4 | ||||||||
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Azure Biosystems: Chemiluminescent Western Blot Imager Azure 300 Resource Report Resource Website 1+ mentions |
Azure Biosystems: Chemiluminescent Western Blot Imager Azure 300 (RRID:SCR_026671) | instrument resource | Multichannel, multimodal imager, with visible fluorescence, visible light, and UV excitation channels. The system is fully upgradeable to fluorescent Western Blot Imaging System. | Imager, visible fluorescence, visible light, UV excitation channels | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026671.pdf | Model_Number_Azure_300 | SCR_026671 | 2026-08-01 12:13:58 | 1 | ||||||||||
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Singular Genomics: G4X Spatial Sequencer Resource Report Resource Website |
Singular Genomics: G4X Spatial Sequencer (RRID:SCR_026684) | instrument resource | Ultra high-throughput, spatial sequencing platform, for integrated multiomic analysis of FFPE samples at subcellular resolution. Spatial sequencing platform capable of simultaneous direct RNA. | spatial sequencing platform, integrated multiomic analysis, FFPE samples, subcellular resolution, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026684.pdf | Model_Number_G4X | SCR_026684 | G4X Spatial Sequencer | 2026-08-01 12:13:58 | 0 | |||||||||
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RWD Life Science: Standard Stereotaxic Holder Resource Report Resource Website 1+ mentions |
RWD Life Science: Standard Stereotaxic Holder (RRID:SCR_026656) | instrument resource | Compact stereotaxic instrument designed for use with knock-out and transgenic mice. Instrument includes 100 micron, 3-axes left-hand manipulator arm, mouse snout clamp and tooth bar, dual-sided ear bars, and corner clamp probe holder. Stoelting’s Motorized Stereotaxic Manipulator Arms are designed for fast, accurate positioning during stereotaxic surgery. Motorized manipulator arms employ touchscreen display for easy-to-control movement of each axis. Manual movement is available anytime. Optional Drill feature available. | stereotaxic instrument, accurate positioning, stereotaxic surgery, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026656.pdf | SCR_026656 | , Standard Stereotaxic Instruments, Standard Stereotaxic Holder | 2026-08-01 12:13:45 | 1 | ||||||||||
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3D-Hub-O platform Resource Report Resource Website 1+ mentions |
3D-Hub-O platform (RRID:SCR_026655) | service resource | 3D-Hub-O specializes in production, manipulation and analysis of organoids from normal and tumor tissues. Physiological platform for research on living pathological tissues. Platform participates in knowledge transfer through customized training of specific organoid culture carried out by platform staff. | organoids production, organoids manipulation, organoids analysis, normal tissues, tumor tissues, | Open | SCR_026655 | 3D-Hub-O, , 3D Hub-O organoid platform | 2026-08-01 12:13:57 | 1 | ||||||||||
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Thermo Fisher: Varioskan LUX Multi-Mode Microplate Reader Resource Report Resource Website 1+ mentions |
Thermo Fisher: Varioskan LUX Multi-Mode Microplate Reader (RRID:SCR_026792) | instrument resource | Varioskan LUX is modular, upgradable instrument that offers usability for range of applications. Reader for absorbance, fluorescence intensity, chemiluminescence, AlphaScreen, and time-resolved fluorescence. | absorbance, fluorescence intensity, chemiluminescence, AlphaScreen, time-resolved fluorescence | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_026792.pdf | Model_Number_Varioskan_LUX | SCR_026792 | 2026-08-01 12:14:01 | 7 | ||||||||||
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Stanford SCG Bioinformatics Cluster Resource Report Resource Website |
Stanford SCG Bioinformatics Cluster (RRID:SCR_026876) | SCG | computational service resource | High-performance computing facility. Its resources have been designed to support labs engaged in genetics and bioinformatics research, but are open to anyone on campus. The Stanford SCG Bioinformatics Cluster is optimized to support large memory, single-node threaded applications as well as applications and workflows that require many small files. | high-performance computing, support large memory, single-node threaded applications |
uses: Globus has parent organization: Stanford University Research Computing is provided by: Stanford University School of Medicine Genetics Bioinformatics Service Center Core Facility |
Restricted | https://scg.stanford.edu, https://med.stanford.edu/gbsc/services/scg-cluster/scg-cluster.html | SCR_026876 | SCG Cluster, Stanford University SCG Cluster, Stanford Genomics cluster, Stanford SCG Informatics Cluster | 2026-08-01 12:13:55 | 0 | |||||||
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Sanofi-Aventis Resource Report Resource Website 1+ mentions |
Sanofi-Aventis (RRID:SCR_026909) | commercial organization | Sanofi-Aventis was the former name of the French multinational pharmaceutical and healthcare company Sanofi, now headquartered in Paris, France. Sanofi S.A. is global healthcare company focused on discovering, developing, and delivering medicines and vaccines. | France, pharmaceutical and healthcare company, medicines and vaccines, | Crossref Funder ID 100014588, Wikidata Q158205, GRID grid.417924.d | https://ror.org/02n6c9837 | SCR_026909 | Sanofi S.A., Sanofi | 2026-08-01 12:13:57 | 1 | |||||||||
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Xstrahl: Small Animal Radiation Research Platform (SARRP) system Resource Report Resource Website 1+ mentions |
Xstrahl: Small Animal Radiation Research Platform (SARRP) system (RRID:SCR_026901) | instrument resource | System used for in vivo radiation therapy and imaging of in vivo radiation therapy and imaging, like mice and rats, in order to study tumor and normal tissue responses to radiation. It combines micro-CT imaging with conformal radiation delivery, allowing researchers to image small tumors and organs, then precisely deliver radiation therapy with sub-millimeter accuracy. | in vivo radiation therapy and imaging, small animals, mice, rats, study tumor and normal tissue, responses to radiation, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_026901.pdf | SCR_026901 | Small Animal Radiation Research Platform (SARRP) system | 2026-08-01 12:13:56 | 1 | ||||||||||
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Leica: BOND-MAX Fully Automated IHC and ISH Staining System Resource Report Resource Website 1+ mentions |
Leica: BOND-MAX Fully Automated IHC and ISH Staining System (RRID:SCR_026887) | instrument resource | Bench-standing IHC/ISH stainer with three-tray system, with 3.5hour run times. Each tray functions independently, allowing on-demand access and enabling you to load slides as they become available. System accommodates up to 29 antibodies (with detection loaded) and allows for easy swapping of antibodies without interrupting ongoing staining processes. | IHC/ISH stainer, slides staining, three-tray system, immunohistochemistry, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_026887.pdf | SCR_026887 | , BOND-MAX Fully Automated IHC and ISH Staining System, BOND-MAX | 2026-08-01 12:13:56 | 1 | ||||||||||
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Cleveland Clinic Resource Report Resource Website |
Cleveland Clinic (RRID:SCR_026850) | institution | Cleveland Clinic is renowned for its advancements in cardiac care, including pioneering coronary artery bypass surgery, and its focus on research and education. It's also known for its strong performance in numerous other specialties, including neurosurgery, gastroenterology, and oncology |
is parent organization of: Cleveland Clinic Lerner Research Institute BioRobotics and Mechanical Testing Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Glassware Core Facility is parent organization of: Cleveland Clinic Research Flow Cytometry Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Media Preparation Core Facility is parent organization of: Cleveland Clinic Molecular Biotechnology Core Facility is parent organization of: Cleveland Clinic Genomic Medicine Biorepository is parent organization of: Cleveland Clinic Lerner Research Institute Proteomics and Metabolomics Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Microbial Sequencing and Analytics Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Cell Culture Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Hybridoma Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Mechanical Prototyping Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Engineering Core Facility is parent organization of: Cleveland Digestive Diseases Research Core Facilities is parent organization of: Cleveland Clinic Lerner Research Institute Electronics Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Polymer Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Genomics Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Laboratory Diagnostic Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Electron Microscopy Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Center for Therapeutics Discovery Core Facility is parent organization of: Cleveland Clinic Bioinformatics and Protein Engineering Core Facility is parent organization of: Cleveland Clinic Lerner Research Institute Light Microscopy Core Facility |
ISNI 0000 0001 0675 4725, GRID grid.239578.2, Wikidata Q4117596, Crossref Funder ID 100007311 | https://ror.org/03xjacd83 | SCR_026850 | 2026-08-01 12:13:53 | 0 | ||||||||||
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ZenCELL owl: live cell imaging and analysis system Resource Report Resource Website |
ZenCELL owl: live cell imaging and analysis system (RRID:SCR_026851) | instrument resource | 24 channels microscope for incubator with automated remote monitoring of cell cultures. 24 independent cameras are used to acquire brightfield or darkfield scans and perform image analysis of up to 24 wells of cell culture in parallel automatically. Culture quality and data can be checked from PC. It enables real-time, non-invasive, label-free monitoring of cell growth directly inside standard incubators. The system captures time-lapse images and performs automated quantitative analysis, generating dynamic growth curves and detailed cellular behavior profiles. | innoME GmbH, 24 channels microscope, microscope for incubator, automated remote monitoring, cell culture, acquire brightfield or darkfield scans, perform image analysis, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_026851.pdf | Model_Number_ZenCELL_owl | SCR_026851 | , zenCELL owl, innoME GmbH zenCELL owl, innoME GmbH ZenCELL owl live cell imaging and analysis system | 2026-08-01 12:13:53 | 0 | |||||||||
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Rush University Medical Center Resource Report Resource Website |
Rush University Medical Center (RRID:SCR_026857) | institution | Rush University Medical Center is academic medical center for basic and clinical research, with physicians and scientists involved in hundreds of research projects developing and testing the effectiveness and safety of new therapies and medical devices. Offers residency and fellowship programs in medical and surgical specialties and subspecialties. | is parent organization of: Rush University Medical Center Genomics and Microbiome Core Facility | Wikidata Q1535116, , GRID grid.240684.c, ISNI 0000 0001 0705 3621 | https://ror.org/01j7c0b24 | SCR_026857 | 2026-08-01 12:14:02 | 0 |
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