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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.news-medical.net/iScan-Coreo-Slide-Scanner-from-Ventana
Slide scanner provides automation for small-to medium-volume labs looking to make the transition to digital pathology. Scanner offers walk-away scanning of up to 160 slides, and produces high-quality images and offers advanced slide handling.
Proper citation: Roche: Ventana iScan Coreo Slide Scanner (RRID:SCR_026036) Copy
https://assets.thermofisher.com/TFS-Assets/LSG/manuals/evos_fl_auto_qr.pdf
High-performance, fully-automated, inverted, multi-channel fluorescence and transmitted light imaging system controlled by the integrated EVOS FL Auto software.
Proper citation: Thermo Fisher: EVOS FL Auto Imaging System (RRID:SCR_026039) Copy
https://www.radiometer.com/en/products/blood-gas-testing/abl90-flex-plus-blood-gas-analyzer
Cassette-based ABL90 FLEX analyzer can deliver 17 parameters from sample as small as 65 μL. ABL90 measures blood gas, electrolytes, metabolites and co-oximetry. The ABL90 analyzer can measure sample from syringe, capillary tube or test tube. Portable, automated analyzer that measures pH, blood gases, electrolytes, glucose, lactate, bilirubin, creatinine.
Proper citation: RADIOMETER: ABL90 FLEX PLUS blood gas analyser (RRID:SCR_025872) Copy
https://pythonvideoannotator.readthedocs.io/en/master/index.html
Software graphical application written in Python, to analyze videos and create notes for events in the video. Used to identify animals’ behaviors based on information extracted from video.
Proper citation: PythonVideoAnnotator (RRID:SCR_025868) Copy
https://www.anton-paar.com/?eID=documentsDownload&document=66294&L=0
Laboratory based X-ray beamline instrument. It performs Small-Angle X-ray Scattering (SAXS) and Wide-Angle X-ray Scattering (WAXS) to analyze the nanostructure of materials without requiring synchrotron facilities. SAXS system resolves nanostructures up to 620 nm. Offers flexible analysis of almost any material under ambient and non-ambient conditions. Number of additional optional features equip SAXSpoint 5.0 for future applications up to the micrometer range (USAXS).
Proper citation: Anton Paar: SAXSpoint 5.0 (RRID:SCR_025989) Copy
https://strexcell.com/cell-stretching-system/#stb100
System for evaluative purposes applies cell stretching and compression force and is operated manually. Has two versions available: 4 cm2 or 10 cm2 stretch chambers. Can mechanically stimulate monolayer and cultured cells and tissue to increase cell growth and shape.
Proper citation: Strex: Manual Cell Stretching System STB-10 (RRID:SCR_025869) Copy
https://www.covaris.com/products-services/instruments/cryoprep
Covaris cryoPREP Dry Pulverizer enables dry, non-contact cryopulverization of tissue samples in a closed system without the risk of carryover or cross-contamination. The cryoPREP system provides a simple and robust tissue processing method for low and high mass inputs. The specially engineered tissueTUBE is used to process samples and extract biomolecules from a diverse set of tissue samples ranging in mass from 15 mg up to 2 g. Both manual and automated versions of the cryoPREP Dry Pulverizers are available to suit your needs.
Proper citation: Covaris: CP02 Automated Dry Pulverizer (RRID:SCR_026012) Copy
https://www.sciencedirect.com/science/article/pii/S0169260710000209#app1
Software program for pharmacokinetic and pharmacodynamic data analysis in Microsoft Excel.
Proper citation: PKSolver (RRID:SCR_026009) Copy
https://www.mdialysis.com/product/70-brain-md-catheter/
Sterile single use 70 Microdialysis Catheter is flexible catheter designed for implantation in brain tissue. Intended to enable microdialysis of the extracellular fluid of brain tissue.
Proper citation: M Dialysis: 70 Brain Microdialysis Catheter (RRID:SCR_026025) Copy
Popular general-purpose scripting language that is especially suited to web development.
Proper citation: PHP (RRID:SCR_025974) Copy
https://patents.google.com/patent/US20220162649A1/en
This technology relies on newly described chemical modifications that allow site-specific and multiple-site conjugation of a wide assortment of molecules on both the termini and internal sites of Cas9, creating a platform for endowing Cas9 with diverse functions. Using this platform, Cas9 can be modified to more precisely incorporate exogenously supplied single-stranded oligonucleotide donor (ssODN) at the DNA break site. We demonstrate that the multiple-site conjugation of ssODN to Cas9 significantly increases the efficiency of precision genome editing, and such a platform is compatible with ssODNs of diverse lengths.
Proper citation: CRISPR-Cas9 conjugation platform for engineering designer beta cells (RRID:SCR_026072) Copy
Software automatic classification tool for PVS1 interpretation of null variants.
Proper citation: AutoPVS (RRID:SCR_026108) Copy
https://doi.org/10.5281/zenodo.5337441
Semantic store of detailed, formal knowledge about ANS connectivity between the central nervous system and end organs. As key component of NIH SPARC program, SCKAN enables integration, discovery, and querying of ANS connectivity across multiple scales.
Proper citation: SCKAN (RRID:SCR_026088) Copy
Open-source software for video capture and video processing for Microsoft Windows. Designed to process linear video streams, including filtering and recompression. It uses AVI container format to store captured video. Video capture/processing utility for 32-bit and 64-bit Windows platforms. Used for processing AVI files, although it can read (not write) MPEG-1 and also handle sets of BMP images.
Proper citation: VirtualDub (RRID:SCR_026123) Copy
Graph database supporting Blueprints and RDF/SPARQL APIs. Supports up to 50 Billion edges on single machine. It is in production use for Fortune 500 customers such as EMC, Autodesk, and many others. It supports key Precision Medicine applications and has wide-spread usage for life science applications. Used to support Cyber analytics in commercial and government applications.
Proper citation: Blazegraph (RRID:SCR_026087) Copy
https://github.com/BackofenLab/HVSeeker/tree/main
Software tool for distinguishing between bacterial and phage sequences. Consists of two separate models: one analyzing DNA sequences and the other focusing on proteins.
Proper citation: HVSeeker (RRID:SCR_026120) Copy
Manual high-performance microtome with mechanical precision specimen feed, designed above all for the manual sectioning of biological specimens embedded in paraffin.Can also be used for cutting harder materials. This product has been discontinued and replaced by HistoCore BIOCUT.
Proper citation: Leica: RM2235 Rotary Microtome (RRID:SCR_026059) Copy
National research resource within All of Us Research Program which asks about participant’s use of tobacco, alcohol, and recreational drugs.
Proper citation: All of Us Research Program Lifestyle Survey (RRID:SCR_026067) Copy
National research resource within All of Us Research Program which is the core survey and asks basic demographic questions, including questions about a participant’s work and home.
Proper citation: All of Us Research Program Basics Survey (RRID:SCR_026066) Copy
https://patents.google.com/patent/WO2019079714A1/en
Microfluidic cartridge for automatically hydrodynamically loading objects (e.g., cell clusters) into traps in parallel trapping channels with one object per trap. This improves loading of cell clusters compared to well-based systems.
Proper citation: Microfluidic trapping chip for culture and assay of cell clusters and objects (RRID:SCR_026069) Copy
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