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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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G Protein-Coupled Receptor BioAssays Ontology Resource Report Resource Website 1+ mentions |
G Protein-Coupled Receptor BioAssays Ontology (RRID:SCR_010324) | BAO-GPCR | controlled vocabulary, data or information resource, ontology | Ontology (http://www.bioassayontology.org/bao_gpcr) that describes pharmacology, biochemistry and physiology of these important and therapeutically promising class of academic and pharmaceutical research targets. Incorporation and comparison of various small molecule screening data sets, such as those deposited in PubChem, ChEMBL, KEGG, PDSP, and/or IUPHAR databases, requires a formalized electronic organization system. In order to bridge the gap between the overflow of HTS data and the bottleneck of integrated analysis tools, herein, we provide the first comprehensive GPCR ontology. The development and utility of GPCR ontology was based on previously developed BioAssay Ontology (BAO). The GPCR ontology contains information about biochemical, pharmacological, and functional properties of individual GPCRs as well as GPCR-selective ligands inclusive of their HTS screening results and other records. This provides the first all-inclusive GPCR ontology with all available data to model the relationship between the GPCR binding sites and their physiologic and pharmacologic role in physiology via small molecule chemical structures. We developed this system using emerging semantic technologies, by leveraging existing and descriptive domain level ontologies. | owl |
is listed by: BioPortal has parent organization: Bioassay Ontology |
nlx_157410 | SCR_010324 | 2026-09-12 12:57:17 | 5 | |||||||||
|
Galen Ontology Resource Report Resource Website |
Galen Ontology (RRID:SCR_010325) | GALEN | controlled vocabulary, data or information resource, ontology | A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic. | owl | is listed by: BioPortal | nlx_157411 | SCR_010325 | 2026-09-12 12:57:17 | 0 | |||||||||
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Gene Ontology Extension Resource Report Resource Website |
Gene Ontology Extension (RRID:SCR_010327) | GO-EXT | controlled vocabulary, data or information resource, ontology | An extension of the Gene Ontology. | obo |
is listed by: BioPortal has parent organization: Gene Ontology |
nlx_157414 | SCR_010327 | 2026-09-12 12:57:17 | 0 | |||||||||
|
Crop Ontology Resource Report Resource Website 10+ mentions |
Crop Ontology (RRID:SCR_010299) | CO | controlled vocabulary, data or information resource, ontology | Ontology that includes crop-specific trait ontologies for several economically important plants like rice, wheat, maize, potato, musa, chickpea and sorghum along with other important domains for crop research such as germplasm, passport, trait measurement scales, experimental design factors etc. | obo | is listed by: BioPortal | nlx_157378 | http://cropontology.org/ | SCR_010299 | 2026-09-12 12:57:16 | 12 | ||||||||
|
Amino Acid Ontology Resource Report Resource Website |
Amino Acid Ontology (RRID:SCR_010290) | AMINO-ACID | controlled vocabulary, data or information resource, ontology | An ontology of amino acids and their properties. Inferred version. | owl | is listed by: BioPortal | nlx_157315 | SCR_010290 | 2026-09-12 12:57:16 | 0 | |||||||||
|
Biochemical Substructure Ontology Resource Report Resource Website |
Biochemical Substructure Ontology (RRID:SCR_010185) | BICSO | controlled vocabulary, data or information resource, ontology | Biochemical Substructure Ontology | protege | is listed by: BioPortal | nlx_157330 | SCR_010185 | 2026-09-12 12:57:15 | 0 | |||||||||
|
KB Bio 101 Resource Report Resource Website |
KB Bio 101 (RRID:SCR_010268) | AURA | controlled vocabulary, data or information resource, ontology | Ontology of the AURA + Inquire project at SRI International, Menlo Park. | owl | is listed by: BioPortal | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | nlx_157455 | SCR_010268 | KB_Bio_101 | 2026-09-12 12:57:16 | 0 | |||||||
|
Current Procedural Terminology Resource Report Resource Website |
Current Procedural Terminology (RRID:SCR_010301) | CPT | controlled vocabulary, data or information resource, ontology | Ontology of current procedural terminology. | umls | is listed by: BioPortal | nlx_157380 | SCR_010301 | 2026-09-12 12:57:17 | 0 | |||||||||
|
Bilingual Ontology of Alzheimer Resource Report Resource Website |
Bilingual Ontology of Alzheimer (RRID:SCR_010149) | ONTOAD | controlled vocabulary, data or information resource, ontology | A bilingual (English-French) domain ontology for modeling knowledge about Alzheimer's Disease and Related Syndromes. | owl, alzheimer, ontology, bilingual | is listed by: BioPortal | Alzheimer's disease, Alzheimer's Related Syndrome | nlx_157325 | SCR_010149 | 2026-09-12 12:57:15 | 0 | ||||||||
|
Dataset processing Resource Report Resource Website |
Dataset processing (RRID:SCR_010303) | ONL-DP | controlled vocabulary, data or information resource, ontology | Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Datasets and the processing of datasets developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a detailed taxonomy of datasets in the area of neuroimaging (and especially MR imaging) as well as a taxonomy of medical image processing. | owl neuroimaging, mri | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157382 | SCR_010303 | 2026-09-12 12:57:17 | 0 | ||||||||
|
BRENDA Tissue and Enzyme Source Ontology Resource Report Resource Website 1+ mentions |
BRENDA Tissue and Enzyme Source Ontology (RRID:SCR_010031) | BTO | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. | obo |
is used by: TISSUES is listed by: BioPortal has parent organization: BRENDA |
nlx_157323 | SCR_010031 | 2026-09-12 12:57:15 | 1 | |||||||||
|
Artificial Intelligence Rheumatology Consultant System Ontology Resource Report Resource Website |
Artificial Intelligence Rheumatology Consultant System Ontology (RRID:SCR_010274) | AI-RHEUM | controlled vocabulary, data or information resource, ontology | Ontology used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers. | umls | is listed by: BioPortal | Rheumatologic disease | nlx_157320 | SCR_010274 | 2026-09-12 12:57:16 | 0 | ||||||||
|
Leukocyte Surface Marker Ontology Resource Report Resource Website |
Leukocyte Surface Marker Ontology (RRID:SCR_010275) | LSM | controlled vocabulary, data or information resource, ontology | An ontology of CD markers for lymphocyte classification in the cell ontology, and other categories of surface and secreted proteins useful for discriminating between lymphocyte subsets by flow cytometry, ELISPOT, ELISA and other assays typically used for phenotypic identification of individual lymphocytes or lymphocyte populations have been included. | obo | is listed by: BioPortal | nlx_157457 | SCR_010275 | 2026-09-12 12:57:16 | 0 | |||||||||
|
Fanconi Anemia Ontology Resource Report Resource Website |
Fanconi Anemia Ontology (RRID:SCR_010319) | IFAR | controlled vocabulary, data or information resource, ontology | An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate. | owl | is listed by: BioPortal | Fanconi Anemia | nlx_157403 | http://lab.rockefeller.edu/smogorzewska/ifar/ | SCR_010319 | 2026-09-12 12:57:17 | 0 | |||||||
|
Electrocardiography Ontology Resource Report Resource Website |
Electrocardiography Ontology (RRID:SCR_010313) | ECG | controlled vocabulary, data or information resource, ontology | Ontology for describing electrocardiograms, their capture method(s) and their waveforms. | owl |
is listed by: BioPortal has parent organization: CardioVascular Research Grid (CVRG) |
nlx_157394 | SCR_010313 | ECG Ontology | 2026-09-12 12:57:17 | 0 | ||||||||
|
Cellular microscopy phenotype ontology Resource Report Resource Website |
Cellular microscopy phenotype ontology (RRID:SCR_010282) | CMPO | controlled vocabulary, data or information resource, ontology | A species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is an application ontology developed in OWL that contains precomposed phenotypes descriptions that are defined using the Gene Ontology (GO) and the Phenotype Trait Ontology (PATO). | owl, phenotype | is listed by: BioPortal | nlx_157357 | https://github.com/EBISPOT/CMPO | SCR_010282 | 2026-09-12 12:57:16 | 0 | ||||||||
|
ABA Adult Mouse Brain Ontology Resource Report Resource Website |
ABA Adult Mouse Brain Ontology (RRID:SCR_010286) | ABA-AMB | controlled vocabulary, data or information resource, ontology | Allen Brain Atlas P56 Mouse Ontology | owl |
is listed by: BioPortal has parent organization: Allen Institute for Brain Science |
nlx_157311 | SCR_010286 | Allen Brain Atlas (ABA) Adult Mouse Brain Ontology, Allen Brain Atlas Adult Mouse Brain Ontology | 2026-09-12 12:57:16 | 0 | ||||||||
|
AEO Resource Report Resource Website |
AEO (RRID:SCR_010287) | AEO | controlled vocabulary, data or information resource, ontology | An ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology, to about 200 classes using the is_a relationship; it thus provides a detailed type classification for tissues. The new classes were chosen for their use in categorizing the major vertebrate and invertebrate anatomy ontologies at a granularity adequate for tissues of a single cell type. The ontology should be useful in increasing the amount of knowledge in anatomy ontologies, facilitating annotation and enabling interoperability across anatomy ontologies | obo |
is listed by: BioPortal has parent organization: OBO |
nlx_157312 | http://purl.bioontology.org/ontology/AEO | SCR_010287 | Anatomical Entity Ontology, Ontology of Anatomical Entities - AEO | 2026-09-12 12:57:16 | 0 | |||||||
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African Traditional Medicine Ontology Resource Report Resource Website |
African Traditional Medicine Ontology (RRID:SCR_010288) | ATMO | controlled vocabulary, data or information resource, ontology | Ontology that describes the actors'' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom''s roles and the disease consideration. | obo | is listed by: BioPortal | nlx_157313 | SCR_010288 | 2026-09-12 12:57:16 | 0 | |||||||||
|
Biomedical Research Integrated Domain Group Model Resource Report Resource Website |
Biomedical Research Integrated Domain Group Model (RRID:SCR_010265) | BRIDG | controlled vocabulary, data or information resource, ontology | An instance of a Domain Analysis Model (DAM) with the goal of producing a shared view of the dynamic and static semantics for the domain of protocol-driven research and its associated regulatory artifacts. This domain of interest is further defined as: Protocol-driven research and its associated regulatory artifacts: i.e. the data, organization, resources, rules, and processes involved in the formal assessment of the utility, impact, or other pharmacological, physiological, or psychological effects of a drug, procedure, process, or device on a human, animal, or other subject or substance plus all associated regulatory artifacts required for or derived from this effort, including data specifically associated with post-marketing adverse event reporting. The Biomedical Research Integrated Domain Group (BRIDG) Model is a collaborative effort engaging stakeholders from the Clinical Data Interchange Standards Consortium (CDISC), the HL7 Regulated Clinical Research Information Management Technical Committee (RCRIM TC), the National Cancer Institute (NCI) and its Cancer Biomedical Informatics Grid (caBIG??), and the US Food and Drug Administration (FDA). Source repository: https://ncisvn.nci.nih.gov/WebSVN/listing.php?repname=bridg-model&path=%2Ftrunk%2FModel+-+OWL%2F& | owl |
is listed by: BioPortal has parent organization: National Cancer Institute |
nlx_157336 | http://www.bridgmodel.org/ | SCR_010265 | BRIDG Model | 2026-09-12 12:57:16 | 0 |
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