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https://github.com/SainsburyWellcomeCentre/Pyper

Software tool for motion tracking.Provides real time or pre recorded motion tracking of specimen in open field. Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version v2 of Pyper allows to customise image processing to track different kind of objects.

Proper citation: Pyper (RRID:SCR_021511) Copy   

•   Source: SciCrunch Registry

https://github.com/cpapasavvas/LinCoM

Software MATLAB package for linearization of place fields in complex mazes.Graph theoretic approach for production of linear place fields in complex mazes. Used for producing linear place fields for hippocampal cells during behavior in complex mazes.Specifically designed to deal with mazes with one or more decision points (e.g., T-maze, W-maze, double T-maze, radial maze, plus maze, etc).

Proper citation: LinCoM (RRID:SCR_021519) Copy   

•   Source: SciCrunch Registry

https://github.com/denisecailab/ezTrack

Open source video analysis pipeline for investigation of animal behavior. Platform independent set of behavior analysis pipelines using interactive Python ( (iPython/Jupyter Notebook) that researchers with no prior programming experience can use.

Proper citation: ezTrack (RRID:SCR_021496) Copy   

•   Source: SciCrunch Registry

https://github.com/J-east/JevonsCameraViewer

Software tool as part of system designed to be easy to build and setup for real time eye tracking.Open source software provides accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

Proper citation: Low Cost Open Source Eye Tracking (RRID:SCR_021497) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/syringepumpcontroller/

Project related to dispensing precise volumes of fluid over precise timescales.System components include syringe holder and control board with syringe pump controller and programming library.Syringe pump controller was developed by American University scientists.

Proper citation: Precision Syringe Pump Controller project (RRID:SCR_021493) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pivr/

Project related to study of orientation behavior and neural circuit functions, through creation and analysis of small, freely moving animals in virtual realities. Provides virtual reality tool system for behavioral and neural circuit studies of small animals.Closed loop platform to study unrestrained sensorimotor behavior.

Proper citation: Pi Virtual Reality System project (RRID:SCR_021490) Copy   

•   Source: SciCrunch Registry

https://github.com/neurospin/pypreclin

Software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

Proper citation: Pypreclin (RRID:SCR_021526) Copy   

•   Source: SciCrunch Registry

https://github.com/oculomatic/oculomatic-release

Software tool for high speed eye tracking for Point Gray USB3.0 cameras.Oculomatic software tracks eye position within acquired image frame at frame rate dictated by image sensor.

Proper citation: Oculomatic (RRID:SCR_021525) Copy   

•   Source: SciCrunch Registry

https://github.com/chand-lab/openEyeTrack

Open source software tool used as part of multithreaded eye tracker.Video based eye tracker.

Proper citation: openEyeTrack (RRID:SCR_021401) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-tes/

Project is related to transcranial Electrical Stimulation.Included system contains aluminum box stimulator with banana connectors for both anode and cathode on front panel,power supply on rear, power switch and serial port, LCD screen and three buttons on top panel that are used to input settings for stimulator. Device for delivering non-invasive neuromodulation techniques such as transcranial direct current stimulation. If device is used for certain types of tDCS (otDCS and tPCs) or external triggering, computer control must be used. Microcontroller is used to regulate operating speed and pulse width modulation switching frequency administrated by device.

Proper citation: Open-tES project (RRID:SCR_021487) Copy   

•   Source: SciCrunch Registry

https://github.com/MatthewBCooke/Pathfinder/

Open source software for analyzing spatial navigation search strategies.

Proper citation: Pathfinder (RRID:SCR_021520) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/openmonkeystudio/

Project for tracking interactions among freely moving monkeys.System includes integrated hardware and software for pose tracking in freely moving rhesus macaques.

Proper citation: OpenMonkeyStudio project (RRID:SCR_021409) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/rat/

Project related to rodent tracking and task control.Provides closed loop system for machine vision rodent tracking and task control created by scientist from Washington University. System to track and report mouse activity while they are contained in simple arena. System uses OpenMV M7 microcontroller to acquire images of arena and process them in real-time to report mouse centroid data to text file. Wireless position tracker for automatically tracking mice in high contrast arenas.

Proper citation: Rodent Arena Tracker project (RRID:SCR_021408) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/nerd/

Portal provides open source neural recording device for wireless transmission of local field potential data in freely behaving animals. Used for electrophysiological recording of local field potentials in freely behaving animals.

Proper citation: NeRD (RRID:SCR_021582) Copy   

•   Source: SciCrunch Registry

https://github.com/ninscope

Sofware tool for use with NINscope.

Proper citation: NINscope software (RRID:SCR_021583) Copy   

•   Source: SciCrunch Registry

https://github.com/openmv

Software tool as part of OpenMV system.

Proper citation: OpenMV (RRID:SCR_021615) Copy   

•   Source: SciCrunch Registry

https://github.com/pyControl

Open source software Python tool for behavioural experiment control. Part of pyControl system.

Proper citation: pyControl (RRID:SCR_021612) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ninscope/

Portal provides miniscope for fluorescence imaging and optogenetic stimulation. Used for monitoring of neural signals during unrestrained behavior.

Proper citation: NINscope (RRID:SCR_021577) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3d-printed-headcap-microdrive/

Portal provides novel head cap and microdrive design for chronic multi electrode recordings in rats through use of 3D printing technology. Head cap and microdrive designs can be fabricated at little cost using consumer grade 3D printers.

Proper citation: 3D Printed Headcap and Microdrive (RRID:SCR_021595) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/multicam-headmount/

Portal provides system of two multi camera head mounts for mice in order to record physiological changes in certain behaviors. System used for video tracking of rodents behavior.

Proper citation: A Head Mounted Multi Camera System for Freely Moving Mice project (RRID:SCR_021591) Copy   

•   Source: SciCrunch Registry