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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
MRI Watcher
 
Resource Report
Resource Website
MRI Watcher (RRID:SCR_000710) data processing software, data visualization software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. A visualization tool for MRI images which handles several formats (.gipl,.mha,.hdr). It uses integrated coupled cursors to show the differences between images. It can load an overlay image and make screenshots. magnetic resonance imaging, 3d spatial image, correlated imaging has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00332 SCR_000710 SciCrunch Registry MRI Watcher 2026-09-26 02:12:50 0
Australian Research Council
 
Resource Report
Resource Website
100+ mentions
Australian Research Council (RRID:SCR_000952) ARC nonprofit organization An Australian government agency that allocates research funding to academics and researchers at Australian universities. The mission of the council is to deliver policy and programs that advance Australian research, spur innovation and benefit the community. funding, allocation, australia, research, academic, policy, public health, community, grant is parent organization of: RAiD ISNI: 0000 0004 0611 9213, Wikidata: Q4824612, nlx_156882, grid.413452.5, Crossref funder ID: 501100000923 https://ror.org/05mmh0f86 SCR_000952 SciCrunch Registry ARC 2026-09-26 02:12:53 356
Americans for Medical Progress
 
Resource Report
Resource Website
Americans for Medical Progress (RRID:SCR_000711) AMP nonprofit organization A non-profit charity dedicated to providing education about animal research for the purpose of protecting medical and scientific progress. The organization seeks to provide accurate and incisive information to foster a balanced public debate on animal research issues. They work to do outreach by distributing timely and relevant news, information and analysis about animal rights extremism to the research community. animal, research, issue, extremism, education, progress, debate Crossref funder ID: 100005411, grid.468272.d, Wikidata: Q4745618, nif-0000-00456, ISNI: 0000 0004 4659 713X https://ror.org/05xxn0r26 SCR_000711 SciCrunch Registry 2026-09-26 02:12:50 0
Academia Sinica; Taipei; Taiwan
 
Resource Report
Resource Website
Academia Sinica; Taipei; Taiwan (RRID:SCR_000950) university The national academy of Taiwan that supports research activities in a wide variety of disciplines, ranging from mathematical and physical sciences, to life sciences, and to humanities and social sciences. The institution plays a particularly important role in the academic field of Chinese Studies. national, academy, research, math, physical science, life science, humanities, social science, chinese studies is parent organization of: HiPipe
is parent organization of: FastSNP
is parent organization of: Gene Ontology Browsing Utility (GOBU)
is parent organization of: IGDB.NSCLC
is parent organization of: CNVVdb - Copy Number Variations across Vertebrate genomes
is parent organization of: Encyclopedia of Hepatocellular Carcinoma Genes Online
is parent organization of: KnowPredsite
THIS RESOURCE IS NO LONGER IN SERVICE ISNI:0000 0001 2287 1366, Crossref funder ID:501100001869, grid.28665.3f, nlx_89460, Wikidata:Q337266 https://ror.org/05bxb3784 SCR_000950 SciCrunch Registry 2026-09-26 02:12:53 0
Oregon State University College of Pharmacy
 
Resource Report
Resource Website
Oregon State University College of Pharmacy (RRID:SCR_000715) university The college of pharmacy at Oregon State University that offers professional education in pharmacy. The foundational goals are to provide professional education, foster research to contribute to public health initiatives and promote safe and affordable medication access. pharmacy, pharmaceutical, professional, education, public health, access, medication, drugs nif-0000-02038 SCR_000715 SciCrunch Registry Oregon State 2026-09-26 02:12:51 0
Brown University; Rhode Island; USA
 
Resource Report
Resource Website
Brown University; Rhode Island; USA (RRID:SCR_000957) university A private, Ivy League research university in Rhode Island, USA. The university offers degrees at the undergraduate and graduate level in a wide variety of fields. private, university, research, undergraduate, graduate uses: ReadCube
is related to: Mnemiopsis Genome Project Portal
is parent organization of: HapCompass
is parent organization of: ASC
is parent organization of: Laboratory for Neural Computation and Cognition
is parent organization of: Basal Ganglia Model in Action
is parent organization of: Mutation Annotation and Genomic Interpretation
is parent organization of: Brown University Rhode Island Biobank Core Facility
is parent organization of: GASVPro
is parent organization of: Spliceman
is parent organization of: Brown University Alpert Medical School Department of Molecular Pharmacology Physiology and Biotechnology
is parent organization of: Brown University Department of Neuroscience
is parent organization of: Brown Alpert Medical School; Rhode Island; USA
is parent organization of: Rnnotator
is parent organization of: Brown University Genomics Core Facility
is parent organization of: Brown Proteomics Shared Resource Facility
is parent organization of: Brown University Labs and Facilities
is parent organization of: THetA
is parent organization of: North East Cyberinfrastructure Consortium
is parent organization of: GASV
is parent organization of: Human Neocortical Neurosolver
is parent organization of: Brown Alpert Medical School Women and Infants Hospital of Rhode Island Kilguss Research Institute Molecular Biology and Imaging Core Facility
is parent organization of: RepEnrich
is parent organization of: Brown University Clinical Laboratory Core Facility
is parent organization of: Brown University Health Center of Biomedical Research Excellence on Opioids and Overdose Admin Core Facility
is parent organization of: Brown University BUH-OPIOID-COBRE Community Engagement Core Facility
is parent organization of: Brown University BUH-COBRE Translational and Transformative Core Facility
is parent organization of: Brown University BUH-OPIOID COBRE Data and Research Methods Core Facility
is parent organization of: Carney Condo
ISNI:0000 0004 1936 9094, Crossref funder ID:100006418, grid.40263.33, Wikidata:Q49114, nlx_78147 https://ror.org/05gq02987 SCR_000957 SciCrunch Registry Brown 2026-09-28 09:31:14 0
Austrian Agency for Health and Food Safety
 
Resource Report
Resource Website
Austrian Agency for Health and Food Safety (RRID:SCR_000955) AGES nonprofit organization A company based in Austria that supports the management of federal agencies relating to public health, animal health, food safety, medical and drug safety, food security and consumer protection. They provide professional and scientific expertise. public health, animal health, food safety, medical and drug safety, food security, consumer protection, research, austria, grid.414107.7, ISNI: 0000 0001 2224 6253, nlx_157916 https://ror.org/055xb4311 http://www.ages.at/ages/en/ SCR_000955 SciCrunch Registry Austrian Agency for Health and Food Safety (AGES) 2026-09-26 02:12:53 0
University of Utah; Utah; USA
 
Resource Report
Resource Website
University of Utah; Utah; USA (RRID:SCR_001003) university Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs. public, university, graduate, post graduate, undergraduate, master's is related to: International AMD Genetics Consortium
is related to: Clinical and Translational Science Awards Consortium
is parent organization of: University of Utah School of Medicine; Utah; USA
is parent organization of: ShapeWorks
is parent organization of: Pathline
is parent organization of: Yandell Lab Portal
is parent organization of: University of Utah Labs and Facilities
is parent organization of: SLOPE
is parent organization of: University of Utah Genetic Science Learning Center - Learn Genetics
is parent organization of: Center for Integrative Biomedical Computing
is parent organization of: SCIRun
is parent organization of: Seg3D
is parent organization of: TumorSim
is parent organization of: SSU rRNA Modification Database
is parent organization of: MMAPPR
is parent organization of: MAKER
is parent organization of: MAKER Web Annotation Service
is parent organization of: Viking Viewer for Connectomics
is parent organization of: VisTrails
is parent organization of: Mouse Party
is parent organization of: Atlases of the Brain
is parent organization of: Schmidtea mediterranea Genome Database
is parent organization of: Medical Biochemistry Resource
is parent organization of: Georgie Project
is parent organization of: BioMesh3D
is parent organization of: ImageVis3D
is parent organization of: map3d
is parent organization of: MizBee
is parent organization of: GNomEx
is parent organization of: University of Utah Microarray and Genomic Analysis Core Facility
is parent organization of: University of Utah Flow Cytometry Core Facility
is parent organization of: BioPSE
is parent organization of: RNA Modification Database
is parent organization of: Nornir
is parent organization of: ABC (Atlas Based Classification)
is parent organization of: DTIProcess ToolKit
is parent organization of: SCORE
is parent organization of: Neoseg
is parent organization of: FluoRender
is parent organization of: Ir-tweak
is parent organization of: GEMINI
is parent organization of: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core
is parent organization of: peddy
is parent organization of: ITK-SNAP
is parent organization of: University of Utah Cell Imaging Core Facility
nlx_26775, Wikidata:Q168515, grid.223827.e, ISNI:0000 0001 2193 0096, Crossref funder ID:100007747 https://ror.org/03r0ha626 SCR_001003 SciCrunch Registry University of Utah 2026-09-26 02:12:53 0
Comprehensive Drug Self-administration and Discrimination Bibliographic Databases
 
Resource Report
Resource Website
Comprehensive Drug Self-administration and Discrimination Bibliographic Databases (RRID:SCR_000707) bibliography, data or information resource, database Database of bibliographic details of over 9,000 references published between 1951 and the present day, and includes abstracts, journal articles, book chapters and books replacing the two former separate websites for Ian Stolerman's drug discrimination database and Dick Meisch's drug self-administration database. Lists of standardized keywords are used to index the citations. Most of the keywords are generic drug names but they also include methodological terms, species studied and drug classes. This index makes it possible to selectively retrieve references according to the drugs used as the training stimuli, drugs used as test stimuli, drugs used as pretreatments, species, etc. by entering your own terms or by using our comprehensive lists of search terms. Drug Discrimination Drug Discrimination is widely recognized as one of the major methods for studying the behavioral and neuropharmacological effects of drugs and plays an important role in drug discovery and investigations of drug abuse. In Drug Discrimination studies, effects of drugs serve as discriminative stimuli that indicate how reinforcers (e.g. food pellets) can be obtained. For example, animals can be trained to press one of two levers to obtain food after receiving injections of a drug, and to press the other lever to obtain food after injections of the vehicle. After the discrimination has been learned, the animal starts pressing the appropriate lever according to whether it has received the training drug or vehicle; accuracy is very good in most experiments (90 or more correct). Discriminative stimulus effects of drugs are readily distinguished from the effects of food alone by collecting data in brief test sessions where responses are not differentially reinforced. Thus, trained subjects can be used to determine whether test substances are identified as like or unlike the drug used for training. Drug Self-administration Drug Self-administration methodology is central to the experimental analysis of drug abuse and dependence (addiction). It constitutes a key technique in numerous investigations of drug intake and its neurobiological basis and has even been described by some as the gold standard among methods in the area. Self-administration occurs when, after a behavioral act or chain of acts, a feedback loop results in the introduction of a drug or drugs into a human or infra-human subject. The drug is usually conceptualized as serving the role of a positive reinforcer within a framework of operant conditioning. For example, animals can be given the opportunity to press a lever to obtain an infusion of a drug through a chronically-indwelling venous catheter. If the available dose of the drug serves as a positive reinforcer then the rate of lever-pressing will increase and a sustained pattern of responding at a high rate may develop. Reinforcing effects of drugs are distinguishable from other actions such as increases in general activity by means of one or more control procedures. Trained subjects can be used to investigate the behavioral and neuropharmacological basis of drug-taking and drug-seeking behaviors and the reinstatement of these behaviors in subjects with a previous history of drug intake (relapse models). Other applications include evaluating novel compounds for liability to produce abuse and dependence and for their value in the treatment of drug dependence and addiction. The bibliography is updated about four times per year. drug, drug-seeking behavior, drug-taking behavior, abstract, behavior, behavioral neuropharmacology, discrimination, non-human vertebrate, publication, relapse, self-administration, substance-related disorder, book, journal article has parent organization: University of Texas Health Science Center at Houston; Texas; USA NIDA DA-04376 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00090 http://www.drugrefs.org/ SCR_000707 SciCrunch Registry Drug Self-administration and Discrimination Bibliographic Databases 2026-09-26 02:12:50 0
FlyBrain
 
Resource Report
Resource Website
1+ mentions
FlyBrain (RRID:SCR_000706) atlas, data or information resource, data processing software, narrative resource, software application, software resource, training material, training resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Interactive database of Drosophila melanogaster nervous system. Used by drosophila neuroscience community and by other researchers studying arthropod brain structure. drosophila melanogaster, ganglion, gene, 3-dimensional, abdominal, anatomy, arthropod, autofluorescence, chemical, development, developmental, golgi, histology, immunocytology, impregnation, map, model, morphology, nervous system, neuroanatomical, neuroanatomy, neuron, neuropil, periphery, phenotype, structure, thoracic, visualization has parent organization: National Institute for Basic Biology; Okazaki; Japan
has parent organization: University of Arizona; Arizona; USA
has parent organization: University of Freiburg; Baden-Wurttemberg; Germany
PMID:8592752
PMID:21280038
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00031 SCR_000706 SciCrunch Registry FlyBrain 2026-09-26 02:12:50 3
Aarhus University; Aarhus; Denmark
 
Resource Report
Resource Website
Aarhus University; Aarhus; Denmark (RRID:SCR_000948) AU university A public university in Denmark that offers degrees at the undergraduate and graduate level in fields such as engineering, nanotechnology, medicine and modern languages. university, undergraduate, graduate, public, nanotechnology, engineering, medicine, modern languages, archaeology is parent organization of: EMI
is parent organization of: FaBox
is parent organization of: FastGap
is parent organization of: Aarhus University Fluorescence Activated Cell Sorting Core Facility
is parent organization of: Aarhus University Bioimaging Core Facility
nlx_156945 SCR_000948 SciCrunch Registry Aarhus Universitet, Aarhus University, University of Aarhus 2026-09-26 02:12:53 0
HapCompass
 
Resource Report
Resource Website
1+ mentions
HapCompass (RRID:SCR_000942) algorithm Software that utilizes a fast cycle basis algorithm for the accurate haplotype assembly of sequence data. It is able to create pairwise SNP phasings. algorithm, haplotype, sequence, genome, dna, rna, snp is listed by: OMICtools
has parent organization: Brown University; Rhode Island; USA
NSF 1048831;
NSF 1321000
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00197 SCR_000942 SciCrunch Registry 2026-09-26 02:12:52 1
Macquarie University Labs and Facilities
 
Resource Report
Resource Website
Macquarie University Labs and Facilities (RRID:SCR_000944) data or information resource, portal, topical portal THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 23,2023. Set of facilities based out of Macquarie University in New South Wales. Some facilities provide services such as proteome analysis or resources of various academic departments like engineering, biological sciences, and geography. proteome, analysis, research, university, biological science, engineering, geography is listed by: ScienceExchange
is related to: MQ Australian Proteome Analysis Facility
is related to: MQ Animal Behaviour Laboratory
is related to: MQ Ramaciotti Centre for Gene Function Analysis
is related to: MQ BioFocus Research Centre
is related to: MQ ARC Centre of Excellence for Engineered Quantum Systems
is related to: Macquarie University MQ Research Centre in Quantum Science and Technology
is related to: MQ Research Centre for Astronomy Astrophysics and Astrophotnics
has parent organization: Macquarie University; Sydney; Australia
THIS RESOURCE IS NO LONGER IN SERVICE SciEx_9680 https://www.mq.edu.au/ SCR_000944 SciCrunch Registry Macquarie University Labs Facilities 2026-09-26 02:12:52 0
cbiNifti: Matlab/Octave Nifti library
 
Resource Report
Resource Website
1+ mentions
cbiNifti: Matlab/Octave Nifti library (RRID:SCR_000860) cbiNifti software library, software resource, software toolkit An I/O library for Matlab/Octave Matlab and Octave library for reading and writing Nifti-1 files. cbiNifti is intended to be a small, self-contained library that makes minimal assumptions about what Nifti files should look like and allow users easy access to the raw data. cbiNifti handles compressed file formats for reading and writing, using Unix pipes for compression and decompression. More information and code examples at: http://www.pc.rhul.ac.uk/staff/J.Larsson/software.html computed tomography, magnetic resonance, pet, spect, matlab, octave is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free, Available for download, Freely available nlx_155680 SCR_000860 SciCrunch Registry 2026-09-26 02:12:52 1
National Institute of Health Sciences; Tokyo; Japan
 
Resource Report
Resource Website
National Institute of Health Sciences; Tokyo; Japan (RRID:SCR_000981) NIHS government granting agency Japanese national institute that conducts testing, research, and studies toward the proper evaluation of the quality, safety, and efficacy of pharmaceutical products, foods, and numerous chemicals in the living environment. Its major responsibilities involve extensive testing and research to ensure the quality, efficacy, and safety of chemical substances (including pharmaceuticals and food) that are closely related to people's lives. nihs, national institute, health science, japan, research, pharmaceutical products, environment, testing, Drugs-Medical Devices, chemicals nlx_157927 SCR_000981 SciCrunch Registry National Institute of Health Sciences - Japan, National Institute of Health Sciences (Japan), National Institute of Health Sciences 2026-09-26 02:12:53 0
National Cheng Kung University; Tainan; Taiwan
 
Resource Report
Resource Website
1+ mentions
National Cheng Kung University; Tainan; Taiwan (RRID:SCR_000980) NCKU university National Cheng Kung University is a research-led comprehensive university in Tainan, Taiwan that has undergraduate, master's, and doctoral degree programs. This university has fields of: science, engineering, medicine, management, planning and design. ncku, national cheng kung university, cheng kung, taiwan university is parent organization of: Apo and Holo structures DataBase
is parent organization of: CoIN
is parent organization of: Tumor Associated Gene database
nlx_34096 SCR_000980 SciCrunch Registry National Cheng Kung University, Guoli Chenggong Daxue, National Cheng Kung University (NCKU), NCKU 2026-09-26 02:12:53 2
MeGX
 
Resource Report
Resource Website
1+ mentions
MeGX (RRID:SCR_000738) data access protocol, data or information resource, database, software resource, web service THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Set of databases and tools that handle genomic and metagenomic sequences in their environmental contexts.Includes geographic information system to systematically store and analyse marine genomic and metagenomic data in conjunction with contextual information; environmental genome browser with fast search functionalities; database with precomputed analyses for selected complete genomes; database and tool to classify metagenomic fragments based on oligonucleotide signatures. functioning of marine ecosystems, marine bacterial, archaeal, phage, metagenome, marine microbe, megdb, analysis is listed by: 3DVC
has parent organization: Max Planck Institute for Marine Microbiology; Bremen; Germany
PMID:16381894 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-03109, nif-0000-21260, SCR_008204, r3d100011324 https://doi.org/10.17616/R3B05S SCR_000738 SciCrunch Registry Marine Ecological GenomiX, megx: marine ecological genomics, Megx.net 2026-09-26 02:12:51 2
BrainNetworkConstructionAnalysisPlatform
 
Resource Report
Resource Website
BrainNetworkConstructionAnalysisPlatform (RRID:SCR_000854) BrainNetworkConstructionAnalysisPlatform data processing software, data visualization software, software application, software resource Construct and analyse brain network is a brain network visualization tool, which can help researchers to visualize construct and analyse resting state functional brain networks from different levels in a quick, easy and flexible way. Entrance parameter of construct and analyse brain network is export parameters of dparsf software.It would be greatly appreciated if you have any suggestions about the package or manual. magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free, Available for download, Freely available nlx_155590 SCR_000854 SciCrunch Registry 2026-09-26 02:12:52 0
Liverpool John Moores University; Liverpool; United Kingdom
 
Resource Report
Resource Website
Liverpool John Moores University; Liverpool; United Kingdom (RRID:SCR_000975) LJMU university Liverpool John Moores University provides undergraduate, masters, and doctorate programs. ljmu, liverpool university, liverpool, university, uk, undergraduate, graduate, doctorate, masters nlx_158057 SCR_000975 SciCrunch Registry Liverpool John Moores University, Liverpool John Moores University (LJMU) 2026-09-26 02:12:53 0
Johns Hopkins University School of Medicine; Baltimore, Maryland; USA
 
Resource Report
Resource Website
Johns Hopkins University School of Medicine; Baltimore, Maryland; USA (RRID:SCR_000973) JHM university Johns Hopkins University School of Medicine is a medical graduate institution that provides physician, clinical fellowship and residency programs. institution, university, baltimore, maryland, usa, medicine, medical school, med school, physician, clinical fellowship, fellowship, residency uses: Scizzle
has parent organization: Johns Hopkins University; Maryland; USA
is parent organization of: SAGE GENIE
is parent organization of: Johns Hopkins NIMH Research Center Novel Therapeutics of HIV-associated Cognitive Disorders
is parent organization of: Johns Hopkins University Pharmacology
is parent organization of: DermAtlas.
is parent organization of: DTI White Matter Atlas
is parent organization of: Johns Hopkins Laboratory of Brain Anatomical MRI
is parent organization of: OMIM
is parent organization of: Johns Hopkins University Neuroscience
is parent organization of: Johns Hopkins Alzheimer's Disease Research Center
is parent organization of: Precursors of Premature Disease and Death
is parent organization of: kmer-SVM
is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core
is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core
is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core
is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core
is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center
is parent organization of: PhenoDB
is parent organization of: Johns Hopkins Medical Institute Clinical and Translational Research Laboratory Core Facility
is parent organization of: Johns Hopkins University School of Medicine Mass Spectrometry and Proteomics Core Facility
is parent organization of: Johns Hopkins Reference Histology Core Facility
is parent organization of: Johns Hopkins University School of Medicine Center for Proteomics Discovery CPD Core Facility
, Wikidata: Q50363516, GRID: grid.469474.c, ISNI: 0000 0000 8617 4175, nlx_76328 https://ror.org/037zgn354 SCR_000973 SciCrunch Registry , Johns Hopkins Medicine, Johns Hopkins University School of Medicine (JHM), Johns Hopkins University School of Medicine 2026-09-26 02:12:53 0

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