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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Abcam Resource Report Resource Website 10000+ mentions |
Abcam (RRID:SCR_012931) | antibody supplier, commercial organization, material resource, reagent supplier | A commercial antibody supplier which supplies primary and secondary antibodies, biochemicals, proteins, peptides, lysates, immunoassays and other kits. | antibody supplier, rabmabs, epitomics, immunoassay, primary antibody, secondary antibody |
is affiliated with: MitoScience is parent organization of: Epitomics |
Available to the research community | nlx_152244 | SCR_012931 | SciCrunch Registry | 2026-09-26 02:15:09 | 124463 | |||||||||
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TargetScore Resource Report Resource Website 1+ mentions |
TargetScore (RRID:SCR_012933) | TargetScore | software resource | Software to infer the posterior distributions of microRNA targets by probabilistically modelling the likelihood microRNA-overexpression fold-changes and sequence-based scores. |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24135265 | Free | OMICS_00421 | SCR_012933 | SciCrunch Registry | TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information | 2026-09-26 02:15:09 | 3 | |||||||
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Traumatic Brain Injury Clinical Trials Network Resource Report Resource Website |
Traumatic Brain Injury Clinical Trials Network (RRID:SCR_013165) | TBI Clinical Trials Network | data or information resource, disease-related portal, knowledge environment, portal, research forum portal, topical portal | The National Center for Medical Rehabilitation Research (NCMRR) established a multi-center network of sites that are working together to design clinical intervention protocols and measures of outcome for TBI. Through rigorous patient evaluation, using common protocols and interventions designed for multiple points of care����??including the accident scene, emergency room, intensive care unit, rehabilitation and long-term follow-up����??the NCMRR TBI Clinical Trials Network can study the required numbers of patients to provide answers more rapidly than individual centers acting alone. This interdisciplinary research Network is designed to evaluate the relationship among acute care practice, rehabilitation strategies, and the long-term functional outcome of TBI patients����??that is, to identify which intervention variables result in improvements in long-term outcomes. Taking advantage of the network model structure has allowed TBI research to progress toward a number of clinical research goals. Specifically, the NCMRR wants to highlight two major achievements to date. First, the TBI Network created a profile of its typical patient to determine the number of patients with different clinical features who might be eligible for future studies and to help estimate recruitment times necessary. Second, Network researchers are developing clinical treatment guidelines and procedures for all points in the continuum of care, including TBI Clinical Trials Network Guidelines for surgical care, systems-based protocol for severe and moderate TBI patients, deep-vein thrombosis prophylaxis procedures, and rehabilitation guidelines for physical therapy, speech-language pathology, occupational therapy, and neuropsychology. | traumatic brain injury, clinical, research, clinical trial, outcome, intervention, one mind tbi | has parent organization: National Institute of Child Health and Human Development | Traumatic Brain Injury | NCMRR | nlx_143904 | http://www.nichd.nih.gov/research/supported/TBI.cfm | SCR_013165 | SciCrunch Registry | NCMRR TBI Clinical Trials Network, Traumatic Brain Injury (TBI) Clinical Trials Network | 2026-09-26 02:15:12 | 0 | |||||
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OntoQuest Resource Report Resource Website |
OntoQuest (RRID:SCR_013281) | OntoQuest | software resource | An ontology management module to perform ontology-based search over data sources. This management system permits a user to store, search and navigate any number of OWL-structured ontologies. Ontoquest may also be accessed through a variety of web services via the Neuroscience Information Framework. | ontology, interoperability, owl, middleware, web service, bio.tools, bio.tools |
is listed by: 3DVC is listed by: bio.tools is listed by: Debian is related to: NIFSTD is related to: NIF Web Services has parent organization: Neuroscience Information Framework |
PMID:18958629 | biotools:list_ontologies, biotools:ontoquest_ws, nlx_151737 | https://bio.tools/list_ontologies, https://bio.tools/ontoquest_ws | SCR_013281 | SciCrunch Registry | Ontoquest | 2026-09-26 02:15:13 | 0 | ||||||
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Gtk-based Analyze Image Viewer Resource Report Resource Website 1+ mentions |
Gtk-based Analyze Image Viewer (RRID:SCR_013282) | data processing software, data visualization software, software application, software resource | GpetView is light-weight image viewer based on Gtk+ library. The supported image format is ANALYZE(TM) format (Mayo Foundation ). GpetView can run on Unix-systems, such as Linux, Solaris, IRIX, Mac OS-X etc. From Version 2.0, GpetView can also run on Win32 system, if you have installed Glib and Gtk+(2.x). Glib andGtk+ can be found at http://www.gtk.org. For Windows users, you can find Gtk+ libraries at http://gladewin32.sourceforge.net/modules/news/ GpetView has the following features: * very light-weight * view images as transverse, coronal, or sagittal * change color-map (support Analyze lkup file) * zoom images * ROI (Region-Of-Interest) with shapes of circle, ellipse, rectangle, polygon and automatic edge detection * Image histogram and profile Sponsors: This resource is supported by Osaka University. Keywords: Image, Viewer, Software, Transverse, Coronal, Sagittal, Map, Histogram, | has parent organization: Osaka University; Osaka; Japan | nif-0000-00307 | SCR_013282 | SciCrunch Registry | GpetView | 2026-09-26 02:15:13 | 2 | ||||||||||
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HiTC Resource Report Resource Website 50+ mentions |
HiTC (RRID:SCR_013175) | HiTC | software resource | Software package to explore high-throughput ''C'' data such as 5C or Hi-C. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_00524 | SCR_013175 | SciCrunch Registry | 2026-09-26 02:15:12 | 87 | ||||||||||
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chimerascan Resource Report Resource Website 50+ mentions |
chimerascan (RRID:SCR_013298) | chimerascan | software resource | Software package that detects gene fusions in paired-end RNA sequencing (RNA-Seq) datasets. Used for detection of chimeric transcripts in high-throughput sequencing data. | Gene fusion detection, paired-end RNA sequencing data, RNA sequencing data, chimeric transcripts detection, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:chimerascan, OMICS_01343 | https://bio.tools/chimerascan | SCR_013298 | SciCrunch Registry | 2026-09-26 02:15:14 | 53 | |||||||
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RDXplorer Resource Report Resource Website 1+ mentions |
RDXplorer (RRID:SCR_013290) | RDXplorer | software resource | A computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
biotools:RDXplorer, OMICS_00349 | https://bio.tools/RDXplorer | SCR_013290 | SciCrunch Registry | 2026-09-26 02:15:13 | 7 | ||||||||
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wapRNA Resource Report Resource Website 1+ mentions |
wapRNA (RRID:SCR_013292) | wapRNA | software resource | A free web-based application for the processing of high-throughput RNA-Seq data from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). | is listed by: OMICtools | PMID:21896507 | OMICS_00370 | SCR_013292 | SciCrunch Registry | 2026-09-26 02:15:14 | 1 | |||||||||
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Genolevures Resource Report Resource Website 10+ mentions |
Genolevures (RRID:SCR_013173) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. It provides annotated sequence data and classifications for the genomes of eighteen species of hemiascomycete yeasts, including nine complete genomes. The Gnolevures web resources provides genetic element pages, orthologs defined by syntenic homology, protein families, a genome browser for interspecies comparison, and data sets for downloading. An advanced search facility permits a number of criterion-based and full text queries. Classification data, including protein families and orthologs, and the most up-to-date genome annotations, are for the most part not available in general-purpose sequence data bases such as EMBL/GenBank/DDBJ. | hemiascomycete yeast, protein family |
is listed by: LabWorm is related to: French National Center for Scientific Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21161, nif-0000-02862, SCR_013203 | SCR_013173 | SciCrunch Registry | Gnolevures | 2026-09-26 02:15:12 | 13 | ||||||||
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Diogenes Resource Report Resource Website 10+ mentions |
Diogenes (RRID:SCR_013293) | software resource | Diogenes is a pan-European Programme targeting the obesity problem from a dietary perspective: seeking new insights and new routes to prevention. An Integrated Project of the EU Sixth Framework Programme for Research and Technological Development (2005-2009). A new methodology has been developed for consistent assignment of GI values to foods across the five European databases used in the Diogenes intervention study. GI values have been assigned according to five decreasing levels of confidence: (1) Measured values for specific foods; (2) Published values from published sources; (3) Equivalent values where published values for similar foods existed; (4) Estimated values three values selected representing low/medium/high GI ranges; (5) Nominal values assigned as 70, where no other value could be assigned with sufficient confidence. Sponsor. A a r h u s K a r l s h a m n D e n m a r k A / S Products: Vegetable Oils (Maize and Rapeseed) click here for the link to the website of AarhusKarlshamn Denmark B a r i l l a Products: Pasta click here for the link to the website of Barilla B e a u v a i s Products: Canned fish products, jam, soups & convenience foods click here for the link to the website of Beauvais C a m p i n a I n s t i t u t e At the Campina Institute dairy products and science come together. The Campina brands include among others: Optimel/ Optiwel, Vifit, Milner, Valess Click here for the link to the website of Campina Institute C o c a - C o l a S e r v i c e s S . A . Products: beverages click here for the link to the website of Coca-Cola Services S.A. D a l o o n Products: Spring rolls and other convenience foods click here for the link to the website of Daloon D a n g S / A Products: egg products click here for the link to the website of Dang A/S D a n i s c o Products: Sugar (different types) click here for the link to the website of Danisco D a n i s h D a i r y B o a r d Products: Dairy products (milk, yoghurt, cheese) click here for the link to the website of the Danish Dairy Board D a n s k e S l a g t e r i e r Products: Pig Meat Products (various types) click here for the link to the website of Danske Slagterier D r . O e t k e r Products: Ready meals click here for the link to the website of Dr. Oetker E u r o g r a n A / S Products: Instant chocolate, cappuccino, soup and mashed poptatoes click here for the link to the website of Eurogran A/S F r i g o d a n Products: Frozen vegetables click here for the link to the website of Frigodan F r i s k o Products: Ice cream click here for the link to the website of Frisko G a m b a F o o d Products: Frozen fish (different types of European and Asian origin) G i l d e N o r g e B A Products: meat click here for the link to the website of Gilde Norge BA H a t t i n g Products: Bread products (different types) click here for the link to the website of Hatting H e i n z Products: ketchup and a broad range of products under HONIG, Konininklijke de Ruijter, VENZ, Carvan Cevitan, Roosvicee click here for the link to the website of Heinz H j e r t i n g L a k s Products: salmon products click here for the link to the website of Hjerting Laks K e l l o g g '' s D e n m a r k Products: different types of Breakfast Cereals Click here for the link to the website of Kellogg''s Denmark K e l l o g g '' s E u r o p e Products: Ready-To-Eat Cereals and Cereal Bars Click here for the link to the website of Kellogg''s K d b r a n c h e n s F l l e s r d Products: meat: beaf and veal click here for the link to the website of Kdbranchens Fllesrd K r a f t Products: chocolate, Philadelphia cream cheese, pasta, Estrella chips & nuts, mayonaise, salad dressings click here for the link to the website of Kraft L a n t m n n e n M i l l s A / S Products: various grains and flour L U , G e n e r a l B i s c u i t s N e d e r l a n d B . V . Products: biscuits click here for the link to the website of LU L y k k e b e r g A / S Products: Fish (marinated herring) click here for the link to the website of Lykkeberg A/S M a s t e r f o o d s Products: Rice and confectionery click here for the different websites of Masterfoods: Uncle Bens, Mars, Twix, Snickers, M&M''s, Masterfoods N u t r i t i o n e t S a n t / M o d i f a s t Products: Modifast (Low Calorie Diet) click here for the link to the website of Nutrition et Sant click here for the link to the website of Modifast P a r t n e r s h i p f o r D a n i s h P o t a t o e s Products: potatoes (different varieties) click here for the link to the website of the Partnership for Danish Potatoes P a s t a l i f e Products: pasta (with high protein content) click here for the link to the website of Pastalife R a h b e k Products: Frozen, ready-made fish dishes click here for the link to the website of Rahbek R i e b e r & S n D a n m a r k A / S Products: mustard, ketchup, mayonnaise, sanwich filling, spreads and other dressings click on the following links for the different websites of Rieber and Sn Danmark A/S: Rieberson, Bahncke, K-Salat R o y a l G r e e n l a n d A / S Products: cold-water prawns click here for the link to the website of Royal Greenlands A/S S c h u l s t a d Products: Rye bread and wheat bread, including high- and low GI varieties click here for the link to the website of Schulstad S n d e r j y d s k K l Products: Frozen kale, spinach and cabbage. click here for the link to the website of Snderjydsk Kl S u i k e r U n i e Products: different types of sugar click here for the link to the website of Suiker Unie T u l i p F o o d C o m p a n y Products: Meat products (cold cuts, cooked meat, bacon, meat balls, ready-meals, soups etc.) Click here for the link to the website of Tulip Food Company U n i l e v e r Products: a broad range of products under Becel, Bertolli, Calv, Knorr, Iglo, Mora, Conimex, Unox click here for the link to the website of Unilever W a s a b r d A / S Products: Crisp bread click on the following links for the different websites of Wasabrd A/S: Wasa Denmark or Wasa International | FASEB list | nif-0000-30454 | SCR_013293 | SciCrunch Registry | Diogenes | 2026-09-26 02:15:14 | 43 | ||||||||||
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3D Brain Resource Report Resource Website |
3D Brain (RRID:SCR_013138) | 3D Brain | data or information resource, mobile app, narrative resource, software application, software resource, training material | iPhone and iPad app that provides a good overview of the brain and its structures allowing you to rotate and zoom around 29 interactive structures with your touch screen. Discover how each brain region functions, what happens when it is injured, and how it is involved in mental illness. Each detailed structure comes with information on functions, disorders, brain damage, case studies, and links to modern research. Compatible with iPhone, iPod touch and iPad. Requires iOS 3.0 or later. | neuroanatomy, brain, gross neuroanatomy |
is related to: Genes to Cognition Online has parent organization: Cold Spring Harbor Laboratory |
The Dana Foundation ; Hewlett Foundation |
Free | nlx_152078 | SCR_013138 | SciCrunch Registry | 2026-09-26 02:15:12 | 0 | |||||||
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Japanese Research Center of Genetic Resources NARO Genebank project Resource Report Resource Website 50+ mentions |
Japanese Research Center of Genetic Resources NARO Genebank project (RRID:SCR_013259) | biomaterial supply resource, material resource, tissue bank | Research Center of Genetic Resources is central coordinating institute in Japan for conservation of plants, microorganisms, and animals related to agriculture. NARO Genebank coordinates this activity in collaboration with network of institutes throughout Japan. Conducts exploration, collection, characterization, preservation, and distribution service of microorganism genetic resources, animal genetic resources raised in Japan, and plant genetic resources. | Japan, conservation, plants, microorganisms, animals, agriculture, NARO, genebank | SCR_013288, nlx_80440, nlx_64563 | SCR_013259 | SciCrunch Registry | Japanese Research Center of Genetic Resources National Agriculture and Food Research Organization Genebank project, NARO Genebank | 2026-09-26 02:15:13 | 94 | ||||||||||
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Children and Adults with Attention Deficit/Hyperactivity Disorder Resource Report Resource Website 1+ mentions |
Children and Adults with Attention Deficit/Hyperactivity Disorder (RRID:SCR_013384) | CHADD | nonprofit organization | Non-profit organization serving individuals with attention deficit-hyperactivity disorder (AD/HD) and their families. CHADD has over 16,000 members in 200 local chapters throughout the U.S. Chapters offer support for individuals, parents, teachers, professionals, and others. CHADD''s primary objectives are: to provide a support network for parents and caregivers; to provide a forum for continuing education; to be a community resource and disseminate accurate, evidence-based information about AD/HD to parents, educators, adults, professionals, and the media; to promote ongoing research; and to be an advocate on behalf of the AD/HD community. In general, CHADD works to improve the lives of people affected by AD/HD through: Collaborative Leadership, Advocacy, Research Education and, Support CHADD has three current priority objectives: (1) to serve as a clearinghouse for evidence-based information on AD/HD, (2) to serve as a local face-to-face family support group for families and individuals affected by AD/HD, and (3) to serve as an advocate for appropriate public policies and public recognition in response to needs faced by families and individuals with AD/HD. CHADD is a membership organization, produces the bi-monthly Attention! magazine (for members), and sponsors an annual conference. The National Resource Center on AD/HD (NRC) is the CDC-funded national clearinghouse for evidence-based information about AD/HD. | education, family, adult human, advocacy, attention, attention deficit disorder, caregiver, child, deficit, disorder, hyperactivity, hyperactivity disorder, individual, media, medication, news, parent, professional, research, support, teacher, treatment, young human | Attention deficit-hyperactivity disorder | ISNI: 0000 0004 0546 7056, grid.433005.1, nif-0000-10195 | https://ror.org/01ds3sh29 | SCR_013384 | SciCrunch Registry | 2026-09-26 02:15:14 | 2 | ||||||||
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Neuroimaging in Python Resource Report Resource Website 10+ mentions |
Neuroimaging in Python (RRID:SCR_013141) | NIPY, | community building portal, data or information resource, portal, software application, software development environment, software development tool, software resource | Community site to make brain imaging research easier that aims to build software that is clearly written, clearly explained, a good fit for the underlying ideas, and a natural home for collaboration. | brain, imaging, neuroimaging, analysis, python, fmri, fmri analysis, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Python Programming Language has parent organization: SourceForge has parent organization: University of California at Berkeley; Berkeley; USA has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; is parent organization of: Dipy is parent organization of: NiLearn is parent organization of: NIPY is parent organization of: NiBabel is parent organization of: Nipype is parent organization of: Nitime |
NIMH 5R01MH081909-02; NIBIB 1R03EB008673-01 |
PMID:21897815 | Revised BSD license | nlx_149365 | http://www.nitrc.org/projects/nipy-community http://www.nitrc.org/projects/nipype | SCR_013141 | SciCrunch Registry | NIPY Community | 2026-09-26 02:15:12 | 27 | ||||
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MD Biosciences Resource Report Resource Website 1+ mentions |
MD Biosciences (RRID:SCR_013383) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152406 | SCR_013383 | SciCrunch Registry | MD Bioproducts | 2026-09-26 02:15:14 | 3 | |||||||||||
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PIA Resource Report Resource Website |
PIA (RRID:SCR_013267) | PIA | software resource | A prefix indexing and alignment software for next-generation sequencing (NGS) for whole human genome. | next-generation sequencing |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00676 | SCR_013267 | SciCrunch Registry | 2026-09-26 02:15:13 | 0 | |||||||||
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Cortical Box Method: Quantitative analysis for gene expressions in rodent cortex Resource Report Resource Website 1+ mentions |
Cortical Box Method: Quantitative analysis for gene expressions in rodent cortex (RRID:SCR_013387) | data analysis software, data processing software, software application, software resource | The Cortical box method is an analytical method that standardizes the serial coronal sections of rodent cortex for quantitative analysis (details are written in the manual document). There are several tools necessary for this analysis. Currently, a program CxStand which is a core program of Cortical Box method is available for download. It standardizes a set of serial sections of rat cortex into standard rectangulars. Cortical box method was developed by Dr. Junya Hirokawa in the Yamamori Lab to map c-fos immunoreactivity in the rat cortex. This method was now applied to analyze the in situ data. From the original image, the cortical region is taken out and transformed, then normalized. You do this to a set of coronal sections of a rat cortex. Then, the cortex becomes a box. You can now slice the cortical box at desired lamina positions for layer maps. For more information, please refer to, http://www.nibb.ac.jp/brish/Gallery/corticalboxE.html. Requirements Cortical Box Method software is written in Labview and requires Labview version 7.0 (or later) and Vision development version 7.0 (or later). Labview and Vision are products of National Instruments (http://www.ni.com/ ). I confirmed (*) the Cortical box software works in the latest versions of Labview (ver.8.6) and Vision development (ver. 8.6), which can be downloaded without charge in the National Instruments web site (http://www.ni.com/ ) and can be used as evaluation softwares for 30 days. I tested the programs on PCs running the Windows family of operating systems. *A VI called image to image does not exist in Labview 8.6, please replace it into image to image 2. Programs CxStand ver 1.01 - (English, 680KB, Latest Version (2008/09/25 Update)) Standardization of a part of cortex into a rectangular. CBanalysis - construct 3D cortical box and create specific layer maps. DensityMap - Creating denisty map of staining signals. Copyright (c) 2008 Junya Hirokawa. All rights reserved. This program is free software; you can redistribute it and/or modify it. | gene expressions, coronal sections, cortex, quantitative analysis, rodent, standardizes | has parent organization: National Institute for Basic Biology; Okazaki; Japan | nif-0000-11885 | SCR_013387 | SciCrunch Registry | Cortical Box Method | 2026-09-26 02:15:14 | 5 | |||||||||
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Baltimore Longitudinal Study of Aging (BLSA) Resource Report Resource Website |
Baltimore Longitudinal Study of Aging (BLSA) (RRID:SCR_013148) | BLSA | data or information resource, database, disease-related portal, portal, research forum portal, topical portal | America''s longest-running scientific study of human aging, begun in 1958. BLSA scientists are learning what happens as people age and how to sort out changes due to aging from those due to disease or other causes. More than 1,400 men and women are study volunteers. They range in age from their 20s to their 90s. This study is currently recruiting healthy seniors over 70. | late adult human, adult, healthy, clinical data, middle adult human, disease, clinical study | has parent organization: Intramural Research Program | Aging, Healthy | NIA | nlx_144413 | http://www.grc.nia.nih.gov/branches/blsa/blsa.htm | SCR_013148 | SciCrunch Registry | Baltimore Longitudinal Study of Aging | 2026-09-26 02:15:12 | 0 | |||||
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Wgsim Resource Report Resource Website 100+ mentions |
Wgsim (RRID:SCR_013269) | Wgsim | software resource | A small tool for simulating sequence reads from a reference genome. | is listed by: OMICtools | OMICS_00260 | SCR_013269 | SciCrunch Registry | 2026-09-26 02:15:13 | 171 |
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