Tools   Select Another Resource Report Type

https://github.com/sanworks/PulsePal

Software tool as part of Pulse Pal system which allows users to create and trigger software defined trains of voltage pulses with high temporal precision.

Proper citation: Pulse Pal (RRID:SCR_021611) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/spikegadgets/

Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way.

Proper citation: SpikeGadgets (RRID:SCR_021623) Copy   

•   Source: SciCrunch Registry

https://www.kentscientific.com/products/somnoflo/

Compact, standalone vaporizer that uses either ambient air with internal air pump or compressed gas. It delivers only anesthetic required by animal according to its weight with flows down to 0.05 LPM. Low flow isoflurane anesthesia machine.

Proper citation: Kent Scientific: SomnoFlow Low Flow Electronic Vaporizer (RRID:SCR_021629) Copy   

•   Source: SciCrunch Registry

https://github.com/strawlab/freemovr_engine

Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system.

Proper citation: FreemoVR (RRID:SCR_021601) Copy   

•   Source: SciCrunch Registry

https://github.com/FlySorterLLC

Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE.

Proper citation: Modular Automated Platform for Large Scale Experiments (RRID:SCR_021600) Copy   

•   Source: SciCrunch Registry

https://github.com/amchagas/poke_device_arduino

Software tool as script to test if IR led, IR photodiode, arduino and 3D printed nose poke device work properly. Part of Nose Poke Device system.

Proper citation: poke device arduino (RRID:SCR_021608) Copy   

•   Source: SciCrunch Registry

https://github.com/delcasso/hope

Softwre tool as part of Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project for brain implant.

Proper citation: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology (RRID:SCR_021606) Copy   

•   Source: SciCrunch Registry

https://www.nanostring.com/products/geomx-digital-spatial-profiler/geomx-dsp-overview/

Integrated commercial system comprising hardware, software and nCounter chemistry that enables simultaneous, highly multiplex spatial profiling of proteins or RNA in FFPE tissues. DSP platform quantifies abundance of protein or RNA by counting unique indexing oligonucleotides assigned to each target of interest. Used to rapidly and quantitatively assess biological implications of heterogeneity within tissue samples.

Proper citation: NanoString: GeoMx Digital Spatial Profiler (RRID:SCR_021660) Copy   

•   Source: SciCrunch Registry

https://meyerinst.com/library/NanoZoomer_RS_Brochure_Catalog.pdf

High speed, high resolution digital scanner with network features. User friendly full slide scanner designed to process up to 210 slides automatically.

Proper citation: Hamamatsu: NanoZoomer 2.0-HT (RRID:SCR_021658) Copy   

•   Source: SciCrunch Registry

https://pypi.org/project/ontquery/

Software tool as framework querying ontology terms within SciCrunch and SciCrunch SciGraph endpoints.

Proper citation: ontquery (RRID:SCR_021659) Copy   

•   Source: SciCrunch Registry

https://www.nexcelom.com/nexcelom-products/automated-cell-counters/cellometer-auto-t4-automated-cell-counter/

System includes automated cell counter for trypan blue viability for cell lines and bright field imaging and pattern recognition software to quickly and accurately identify and count individual cells. Cell count, concentration, diameter, and % viability are automatically calculated and reported.

Proper citation: McKinley: Cellometer Auto T4 (RRID:SCR_021656) Copy   

•   Source: SciCrunch Registry

https://pdf.medicalexpo.com/pdf/ge-healthcare-life-sciences/amersham-imager-600/80554-135352.html

Amersham Imager 600 is CCD camera system that produces digitial images of samples in gels or membranes in three different modes: chemiluminescence, colorimetric and fluorescent image capture. Provides imaging system to capture and analyze protein and DNA sample gels and membranes in high resolution.

Proper citation: GE: Amersham Imager 600 (RRID:SCR_021853) Copy   

•   Source: SciCrunch Registry

https://pypi.org/project/BorutaShap/

Software tool as wrapper feature selection method which combines both Boruta feature selection algorithm with shapley values.

Proper citation: BorutaShap (RRID:SCR_021696) Copy   

•   Source: SciCrunch Registry

https://lightgbm.readthedocs.io/en/latest/

Software tool as gradient boosting framework that uses tree based learning algorithms. Designed to be distributed and efficient with advantages:Faster training speed and higher efficiency;Lower memory usage;Better accuracy;Support of parallel, distributed, and GPU learning;Capable of handling large scale data.

Proper citation: LightGBM (RRID:SCR_021697) Copy   

•   Source: SciCrunch Registry

https://github.com/gfairchild/pyxDamerauLevenshtein

Software tool implements Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance.

Proper citation: pyxDamerauLevenshtein (RRID:SCR_021858) Copy   

•   Source: SciCrunch Registry

http://phenex.phenoscape.org/

Software application for annotating character matrix files with ontology terms. Character states can be annotated using Entity-Quality syntax, where entity, quality, and possibly related entities are drawn from requisite ontologies. In addition, taxa (the rows of a character matrix) can be annotated with identifiers from taxonomy ontology. Phenex saves ontology annotations alongside original free text character matrix data using new NeXML format standard for evolutionary data.

Proper citation: Phenex (RRID:SCR_021748) Copy   

•   Source: SciCrunch Registry

https://www.nanostring.com/products/ncounter-analysis-system/ncounter-systems-overview/

System includes hardware and software. Options include nCounter SPRINT,nCounter MAX or nCounter FLEX. Platform used for multiplex analysis of up to 800 RNA, DNA, or protein targets. System can be combined with GeoMx Digital Spatial Profiler (DSP) to enable high-plex, spatially-resolved RNA, and protein quantification.

Proper citation: NanoString: nCounter Analysis System (RRID:SCR_021712) Copy   

•   Source: SciCrunch Registry

https://yaml.org

YAML is a human friendly data serialization language for all programming languages. Unicode based data serialization language designed around common native data types of agile programming languages. Useful for programming needs ranging from configuration files to Internet messaging to object persistence to data auditing.

Proper citation: YAML (RRID:SCR_021710) Copy   

•   Source: SciCrunch Registry

https://www.trikinetics.com/

System from TriKinetics for monitoring Drosophila activity. Includes hardware and DAMSystem3 Software for data acquision and DAMFileScan Software for scanning data for errors. Applied to behavioral activity experiments, including sleep deprivation analyses and general studies of hypoactivity and hyperactivity.

Proper citation: TriKinetics: Drosophila Activity Monitoring System (RRID:SCR_021798) Copy   

•   Source: SciCrunch Registry

https://manualzz.com/doc/6543996/drosophila-activity-monitoring-system-user-s-guide

Software tool used in Drosophila Activity Monitor system to scann data for errors. Also allows user to extract data from monitor files and bin data in different lengths.

Proper citation: Trikinetics DAM FileScan (RRID:SCR_021817) Copy   

•   Source: SciCrunch Registry