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https://github.com/tanghaibao/jcvi/wiki/ALLMAPS

Software tool for computing scaffold ordering that maximizes colinearity to collection of maps, including genetic, physical or comparative maps into final chromosome build.Robust scaffold ordering based on multiple maps.

Proper citation: ALLMAPS (RRID:SCR_021171) Copy   

•   Source: SciCrunch Registry

https://biospherix.com/safety-hood/

Hood holds any animal lab chambers while continuously sweeping all experiment related off gases away.Used to capture and exhaust gases or vapors which escape from animal chamber and directs them to safe location.Helps to control animal odor in the lab. Available in standard and customized dimensions.

Proper citation: BioSpherix: Biological Safety Hood (RRID:SCR_021206) Copy   

•   Source: SciCrunch Registry

https://www.noldus.com/catwalk-xt

Gait analysis system for quantitative assessment of footfalls and locomotion in rats and mice. System includes corridor that directs free movement in straight line, hardened glass walkway that enables CatWalk XT Illuminated Footprints technology,high speed color camera for spatial and temporal resolution, CatWalk XT software for recording and automated analysis of locomotor ability of rodents.

Proper citation: Noldus: CatWalk XT (RRID:SCR_021262) Copy   

•   Source: SciCrunch Registry

https://www.leicabiosystems.com/digital-pathology/scan/aperio-at2/

Digital whole slide scanner.400 slide capacity brightfield scanner. High throughput with small footprint. 2x3 slide option available.Aperio AT2 runs on Microsoft Windows 10 operating system.

Proper citation: Leica: Aperio AT2 scanner (RRID:SCR_021256) Copy   

•   Source: SciCrunch Registry

https://neurodatawithoutborders.github.io/matnwb/

Software Matlab interface for reading and writing Neurodata Without Borders (NWB) 2.0 files.

Proper citation: MatNWB (RRID:SCR_021156) Copy   

•   Source: SciCrunch Registry

https://github.com/chen42/tailTimer

Device for automating tail immersion assay. Used for measuring acute thermal pain in rodents. Software recognizes several specific RFID keys as user interface commands, which allows TailTimer to be operated via RFID fobs.

Proper citation: TailTimer (RRID:SCR_021277) Copy   

•   Source: SciCrunch Registry

https://github.com/NeurodataWithoutBorders/nwb-jupyter-widgets

of widgets for visualization NWB data in Jupyter notebook. Widgets allow you to navigate through hierarchical structure of NWB file and visualize specific data elements. Designed to work with NWB 2.0 files and to be easy to extend.

Proper citation: NWBwidgets (RRID:SCR_021154) Copy   

•   Source: SciCrunch Registry

https://www.gnu.org/software/bash/

GNU Project shell. Sh-compatible shell that incorporates useful features from Korn shell (ksh) and the C shell (csh). Improvements offered by Bash include command-line editing, unlimited size command history,job control,shell functions and aliases,indexed arrays of unlimited size,integer arithmetic in any base from two to sixty four.

Proper citation: Bash (RRID:SCR_021268) Copy   

•   Source: SciCrunch Registry

https://www.microscope.healthcare.nikon.com/products/upright-microscopes/eclipse-e200

Educational microscope. Designed as simple system that reduces fatigue from use over long periods. With structure and anti mold design, offers high quality and accuracy that can be retained for years even in hot and humid environments.

Proper citation: Nikon: Eclipse E200 microscope (RRID:SCR_021243) Copy   

•   Source: SciCrunch Registry

https://www.microscope.healthcare.nikon.com/en_EU/products/inverted-microscopes/eclipse-ti-series

ECLIPSE Ti Series of inverted microscopes combined with Nikon NIS-Elements imaging acquisition and analysis software, enables to generate data faster, more easily, and more accurately than ever before.Product Discontinued. Replaced by ECLIPSE Ti2 Series.

Proper citation: Nikon: ECLIPSE Ti inverted microscope system (RRID:SCR_021242) Copy   

•   Source: SciCrunch Registry

https://www.zeiss.com/microscopy/int/products/imaging-systems/lattice-lightsheet-7.html?utm_campaign=lattice-lightsheet-21&utm_source=stream&utm_medium=video&utm_term=pl-organic

System for long term volumetric imaging of living cells. Makes light sheet fluorescence microscopy available for live cell imaging at subcellular resolution. Automated system for volumetric imaging of subcellular structures and dynamics over hours and days with protection from photo damage.

Proper citation: Zeiss: Lattice Lightsheet 7 (RRID:SCR_021237) Copy   

•   Source: SciCrunch Registry

https://diagnostics.roche.com/us/en/products/instruments/discovery-ultra-research.html

Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. With 30 individual slide drawers, DISCOVERY ULTRA system enables to run both manual and fully automated experiments simultaneously with nosynchronization errors. Provides ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH.

Proper citation: Roche: Ventana DISCOVERY Ultra (RRID:SCR_021254) Copy   

•   Source: SciCrunch Registry

https://github.com/murthylab/sleap

Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals.

Proper citation: Social LEAP (RRID:SCR_021382) Copy   

•   Source: SciCrunch Registry

https://www.iqvia.com/

IQVIA, formerly Quintiles and IMS Health, Inc., is an American multinational company serving the combined industries of health information technology and clinical research.

Proper citation: IQVIA (RRID:SCR_021377) Copy   

•   Source: SciCrunch Registry

https://github.com/slundberg/shap

Software tool as unified framework for interpreting predictions of machine learning models. Used to explain output of any machine learning model. Connects optimal credit allocation with local explanations using classic Shapley values from game theory and their related extensions.

Proper citation: SHapley Additive ExPlanations (RRID:SCR_021362) Copy   

•   Source: SciCrunch Registry

https://protaratx.com/

Clinical stage company identifying and advancing transformative therapies for people with rare and specialty diseases. Former name was ArTara Therapeutics.

Proper citation: Protara Therapeutics (RRID:SCR_021376) Copy   

•   Source: SciCrunch Registry

https://github.com/sanworks/PulsePal

Software tool as part of Pulse Pal system which allows users to create and trigger software defined trains of voltage pulses with high temporal precision.

Proper citation: Pulse Pal (RRID:SCR_021611) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/spikegadgets/

Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way.

Proper citation: SpikeGadgets (RRID:SCR_021623) Copy   

•   Source: SciCrunch Registry

https://www.kentscientific.com/products/somnoflo/

Compact, standalone vaporizer that uses either ambient air with internal air pump or compressed gas. It delivers only anesthetic required by animal according to its weight with flows down to 0.05 LPM. Low flow isoflurane anesthesia machine.

Proper citation: Kent Scientific: SomnoFlow Low Flow Electronic Vaporizer (RRID:SCR_021629) Copy   

•   Source: SciCrunch Registry

https://github.com/strawlab/freemovr_engine

Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system.

Proper citation: FreemoVR (RRID:SCR_021601) Copy   

•   Source: SciCrunch Registry